Wall clock time and date at job start Mon Mar 30 2020 03:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30105 * 124.94475 * 2 1 4 4 C 1.35803 * 109.65641 * 179.97438 * 3 2 1 5 5 C 1.39697 * 133.51105 * 180.02562 * 4 3 2 6 6 C 1.38215 * 119.70986 * 179.97438 * 5 4 3 7 7 O 1.35804 * 119.80639 * 179.97438 * 6 5 4 8 8 C 1.34814 * 117.00113 * 5.55956 * 7 6 5 9 9 H 1.07999 * 120.00053 * 354.94141 * 8 7 6 10 10 C 1.38644 * 119.99741 * 174.66609 * 8 7 6 11 11 N 1.31570 * 119.99596 * 180.27528 * 10 8 7 12 12 Si 1.86790 * 120.00312 * 0.27640 * 10 8 7 13 13 H 1.48498 * 109.47394 * 90.00011 * 12 10 8 14 14 H 1.48503 * 109.47451 * 209.99982 * 12 10 8 15 15 H 1.48507 * 109.47081 * 329.99824 * 12 10 8 16 16 C 1.39376 * 120.38008 * 0.27132 * 6 5 4 17 17 C 1.37705 * 120.39418 * 359.46389 * 16 6 5 18 18 C 1.38881 * 119.92171 * 0.51534 * 17 16 6 19 19 N 1.36016 * 124.94184 * 179.97438 * 2 1 3 20 20 C 1.46493 * 126.34876 * 0.02562 * 19 2 1 21 21 H 1.09000 * 109.47301 * 90.02696 * 1 2 3 22 22 H 1.09002 * 109.47067 * 210.02813 * 1 2 3 23 23 H 1.08997 * 109.47063 * 330.02687 * 1 2 3 24 24 H 1.07994 * 120.13728 * 359.97438 * 5 4 3 25 25 H 0.97000 * 119.99880 * 179.97438 * 11 10 8 26 26 H 1.08002 * 119.80160 * 179.72779 * 16 6 5 27 27 H 1.08003 * 120.04264 * 180.25174 * 17 16 6 28 28 H 1.09000 * 109.47229 * 90.02840 * 20 19 2 29 29 H 1.09002 * 109.47207 * 210.02842 * 20 19 2 30 30 H 1.09003 * 109.47766 * 330.02979 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5623 0.7084 0.0006 5 6 4.7572 1.4321 0.0013 6 6 5.9650 0.7601 0.0023 7 8 7.1278 1.4617 0.0024 8 6 7.0342 2.8016 0.1180 9 1 6.0643 3.2767 0.1227 10 6 8.1827 3.5690 0.2364 11 7 8.0911 4.8762 0.3546 12 14 9.8601 2.7472 0.2282 13 1 10.3615 2.6594 -1.1668 14 1 10.8075 3.5475 1.0452 15 1 9.7451 1.3814 0.7998 16 6 5.9964 -0.6333 -0.0031 17 6 4.8246 -1.3566 0.0016 18 6 3.6028 -0.6962 0.0010 19 7 2.2861 -1.1150 0.0005 20 6 1.8162 -2.5025 0.0006 21 1 -0.3634 -0.0005 -1.0277 22 1 -0.3633 -0.8897 0.5143 23 1 -0.3633 0.8902 0.5134 24 1 4.7371 2.5118 0.0010 25 1 8.8947 5.4131 0.4379 26 1 6.9454 -1.1488 -0.0067 27 1 4.8556 -2.4362 0.0015 28 1 1.7005 -2.8470 -1.0270 29 1 2.5422 -3.1319 0.5153 30 1 0.8562 -2.5611 0.5136 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260465796.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:07 Heat of formation + Delta-G solvation = 49.415606 kcal Electronic energy + Delta-G solvation = -15476.775119 eV Core-core repulsion = 12852.942597 eV Total energy + Delta-G solvation = -2623.832523 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.59139 -38.50881 -35.49554 -33.84675 -32.28316 -30.87717 -29.31535 -27.27905 -26.60107 -24.75729 -21.74503 -21.14635 -19.69637 -17.95164 -17.35387 -16.43949 -15.71335 -15.65275 -14.23947 -14.15534 -13.76328 -13.66729 -13.34781 -13.08997 -12.95689 -12.49095 -12.36438 -12.22530 -12.19509 -11.72934 -11.03577 -10.97032 -10.33314 -10.21084 -9.76084 -9.65063 -9.17360 -8.73694 -7.57341 -7.04590 -6.32944 -3.99393 1.51866 2.30762 2.94191 3.23445 3.28659 3.30119 3.44354 4.29625 4.46305 4.54020 4.72504 4.86179 4.88218 5.06639 5.18034 5.25634 5.34808 5.45215 5.58720 5.70803 5.96128 6.06360 6.14136 6.38971 6.65205 6.95835 7.09230 7.24526 7.49184 7.60175 7.88702 8.10041 8.42454 9.02020 9.63655 10.74848 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.048756 B = 0.006315 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.145747 B = 4432.489801 C = 4983.374928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.264 3.736 3 N -0.501 5.501 4 C 0.096 3.904 5 C -0.188 4.188 6 C 0.147 3.853 7 O -0.218 6.218 8 C -0.386 4.386 9 H 0.108 0.892 10 C 0.062 3.938 11 N -0.880 5.880 12 Si 0.906 3.094 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.260 1.260 16 C -0.141 4.141 17 C -0.083 4.083 18 C -0.019 4.019 19 N -0.497 5.497 20 C 0.085 3.915 21 H 0.082 0.918 22 H 0.073 0.927 23 H 0.092 0.908 24 H 0.140 0.860 25 H 0.278 0.722 26 H 0.128 0.872 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.422 -14.495 -0.479 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.000 4.000 3 N -0.224 5.224 4 C -0.021 4.021 5 C -0.210 4.210 6 C 0.093 3.907 7 O -0.123 6.123 8 C -0.462 4.462 9 H 0.125 0.875 10 C -0.141 4.141 11 N -0.518 5.518 12 Si 0.731 3.269 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.184 1.184 16 C -0.161 4.161 17 C -0.103 4.103 18 C -0.124 4.124 19 N -0.191 5.191 20 C -0.058 4.058 21 H 0.100 0.900 22 H 0.091 0.909 23 H 0.110 0.890 24 H 0.158 0.842 25 H 0.089 0.911 26 H 0.146 0.854 27 H 0.133 0.867 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.335 -13.653 -0.468 17.751 hybrid contribution 0.921 -0.993 -0.004 1.355 sum -10.413 -14.647 -0.472 17.977 Atomic orbital electron populations 1.20267 0.85144 1.03961 1.03558 1.23439 0.95304 0.81147 1.00151 1.70352 1.01537 1.27142 1.23326 1.18694 0.91150 0.89879 1.02389 1.20207 0.88344 1.00879 1.11563 1.18637 0.85760 0.90626 0.95636 1.83578 1.26370 1.21229 1.81129 1.20802 0.97043 0.77257 1.51072 0.87486 1.24461 0.99101 0.94725 0.95779 1.69664 1.30486 1.03958 1.47737 0.86182 0.81955 0.80117 0.78620 1.19950 1.20911 1.18367 1.20079 0.97515 0.91266 1.07265 1.19405 0.88568 0.98056 1.04320 1.18628 0.84671 0.95240 1.13875 1.44860 1.04887 1.06528 1.62869 1.21796 1.00964 0.80358 1.02665 0.89960 0.90858 0.88971 0.84207 0.91146 0.85418 0.86682 0.91474 0.90263 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.17 36.01 0.37 -0.33 16 2 C 0.26 4.21 7.85 -154.84 -1.22 2.99 16 3 N -0.50 -10.37 11.27 -8.24 -0.09 -10.46 16 4 C 0.10 2.13 7.22 -84.70 -0.61 1.52 16 5 C -0.19 -4.57 9.21 -39.05 -0.36 -4.93 16 6 C 0.15 3.51 6.64 -39.17 -0.26 3.25 16 7 O -0.22 -5.85 8.58 -0.07 0.00 -5.85 16 8 C -0.39 -11.22 9.94 30.88 0.31 -10.91 16 9 H 0.11 3.24 5.42 -52.49 -0.28 2.96 16 10 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 11 N -0.88 -26.08 13.96 55.48 0.77 -25.31 16 12 Si 0.91 21.94 28.62 -169.99 -4.86 17.07 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 16 C -0.14 -2.79 9.97 -39.35 -0.39 -3.18 16 17 C -0.08 -1.43 10.03 -39.54 -0.40 -1.83 16 18 C -0.02 -0.36 6.87 -83.91 -0.58 -0.94 16 19 N -0.50 -7.53 3.21 -118.46 -0.38 -7.91 16 20 C 0.09 0.78 10.96 59.84 0.66 1.43 16 21 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.07 0.51 7.01 -51.93 -0.36 0.14 16 23 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.14 3.64 5.61 -52.49 -0.29 3.35 16 25 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 27 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.52 6.99 -51.93 -0.36 0.16 16 LS Contribution 263.35 15.07 3.97 3.97 Total: -1.00 -33.88 263.35 -6.15 -40.04 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -2.98 Total: -0.30 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -2.58 Total: -11.23 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.30 Total: -43.68 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: 0.00 Total: -5.85 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.86 Total: 17.07 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.88 -6.15 -40.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465796.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.451 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds