Wall clock time and date at job start Mon Mar 30 2020 03:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30105 * 124.94475 * 2 1 4 4 C 1.35803 * 109.65641 * 179.97438 * 3 2 1 5 5 C 1.39697 * 133.51105 * 180.02562 * 4 3 2 6 6 C 1.38215 * 119.70986 * 179.97438 * 5 4 3 7 7 O 1.35804 * 119.80639 * 179.97438 * 6 5 4 8 8 C 1.34814 * 117.00113 * 5.55956 * 7 6 5 9 9 H 1.07999 * 120.00053 * 354.94141 * 8 7 6 10 10 C 1.38644 * 119.99741 * 174.66609 * 8 7 6 11 11 N 1.31570 * 119.99596 * 180.27528 * 10 8 7 12 12 Si 1.86790 * 120.00312 * 0.27640 * 10 8 7 13 13 H 1.48498 * 109.47394 * 90.00011 * 12 10 8 14 14 H 1.48503 * 109.47451 * 209.99982 * 12 10 8 15 15 H 1.48507 * 109.47081 * 329.99824 * 12 10 8 16 16 C 1.39376 * 120.38008 * 0.27132 * 6 5 4 17 17 C 1.37705 * 120.39418 * 359.46389 * 16 6 5 18 18 C 1.38881 * 119.92171 * 0.51534 * 17 16 6 19 19 N 1.36016 * 124.94184 * 179.97438 * 2 1 3 20 20 C 1.46493 * 126.34876 * 0.02562 * 19 2 1 21 21 H 1.09000 * 109.47301 * 90.02696 * 1 2 3 22 22 H 1.09002 * 109.47067 * 210.02813 * 1 2 3 23 23 H 1.08997 * 109.47063 * 330.02687 * 1 2 3 24 24 H 1.07994 * 120.13728 * 359.97438 * 5 4 3 25 25 H 0.97000 * 119.99880 * 179.97438 * 11 10 8 26 26 H 1.08002 * 119.80160 * 179.72779 * 16 6 5 27 27 H 1.08003 * 120.04264 * 180.25174 * 17 16 6 28 28 H 1.09000 * 109.47229 * 90.02840 * 20 19 2 29 29 H 1.09002 * 109.47207 * 210.02842 * 20 19 2 30 30 H 1.09003 * 109.47766 * 330.02979 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5623 0.7084 0.0006 5 6 4.7572 1.4321 0.0013 6 6 5.9650 0.7601 0.0023 7 8 7.1278 1.4617 0.0024 8 6 7.0342 2.8016 0.1180 9 1 6.0643 3.2767 0.1227 10 6 8.1827 3.5690 0.2364 11 7 8.0911 4.8762 0.3546 12 14 9.8601 2.7472 0.2282 13 1 10.3615 2.6594 -1.1668 14 1 10.8075 3.5475 1.0452 15 1 9.7451 1.3814 0.7998 16 6 5.9964 -0.6333 -0.0031 17 6 4.8246 -1.3566 0.0016 18 6 3.6028 -0.6962 0.0010 19 7 2.2861 -1.1150 0.0005 20 6 1.8162 -2.5025 0.0006 21 1 -0.3634 -0.0005 -1.0277 22 1 -0.3633 -0.8897 0.5143 23 1 -0.3633 0.8902 0.5134 24 1 4.7371 2.5118 0.0010 25 1 8.8947 5.4131 0.4379 26 1 6.9454 -1.1488 -0.0067 27 1 4.8556 -2.4362 0.0015 28 1 1.7005 -2.8470 -1.0270 29 1 2.5422 -3.1319 0.5153 30 1 0.8562 -2.5611 0.5136 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260465796.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:06 Heat of formation + Delta-G solvation = 25.968904 kcal Electronic energy + Delta-G solvation = -15477.791845 eV Core-core repulsion = 12852.942597 eV Total energy + Delta-G solvation = -2624.849248 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.00177 -40.33936 -37.12117 -35.11317 -34.41182 -32.03517 -30.88294 -28.75544 -27.78138 -26.58700 -23.32692 -22.75626 -20.99463 -19.89162 -19.07109 -17.87167 -17.30830 -16.89514 -16.07609 -15.76587 -15.60051 -15.06183 -14.66253 -14.32037 -14.12286 -14.00197 -13.68689 -13.59157 -13.29664 -13.04406 -12.79801 -12.69571 -12.05643 -11.82531 -11.58202 -11.17626 -10.80758 -10.77233 -9.10141 -8.72679 -8.48249 -6.22211 0.02713 0.67113 1.33298 1.39679 1.55117 1.78890 1.86142 2.30519 2.75905 2.99415 3.13376 3.33654 3.64303 3.96671 4.13055 4.34803 4.44731 4.47510 4.52690 4.68514 4.71491 4.78661 4.86131 5.04855 5.12080 5.36192 5.45266 5.56778 5.73333 5.82356 6.12073 6.37599 6.84629 7.02031 7.56120 8.64005 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.048756 B = 0.006315 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.145747 B = 4432.489801 C = 4983.374928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.280 3.720 3 N -0.562 5.562 4 C 0.062 3.938 5 C -0.219 4.219 6 C 0.120 3.880 7 O -0.236 6.236 8 C -0.401 4.401 9 H 0.069 0.931 10 C 0.007 3.993 11 N -0.927 5.927 12 Si 0.980 3.020 13 H -0.263 1.263 14 H -0.268 1.268 15 H -0.255 1.255 16 C -0.148 4.148 17 C -0.053 4.053 18 C -0.016 4.016 19 N -0.488 5.488 20 C 0.071 3.929 21 H 0.104 0.896 22 H 0.115 0.885 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.285 0.715 26 H 0.157 0.843 27 H 0.173 0.827 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.735 -19.231 -0.508 23.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.014 3.986 3 N -0.286 5.286 4 C -0.056 4.056 5 C -0.241 4.241 6 C 0.070 3.930 7 O -0.143 6.143 8 C -0.478 4.478 9 H 0.086 0.914 10 C -0.191 4.191 11 N -0.568 5.568 12 Si 0.801 3.199 13 H -0.188 1.188 14 H -0.192 1.192 15 H -0.179 1.179 16 C -0.168 4.168 17 C -0.073 4.073 18 C -0.124 4.124 19 N -0.180 5.180 20 C -0.069 4.069 21 H 0.123 0.877 22 H 0.133 0.867 23 H 0.110 0.890 24 H 0.114 0.886 25 H 0.095 0.905 26 H 0.174 0.826 27 H 0.190 0.810 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.720 -18.457 -0.500 22.421 hybrid contribution 0.888 0.291 -0.008 0.934 sum -11.833 -18.166 -0.508 21.686 Atomic orbital electron populations 1.20588 0.80551 1.06027 1.05568 1.24586 0.97500 0.80314 0.96162 1.70315 1.01403 1.30266 1.26634 1.18847 0.91267 0.92000 1.03469 1.20072 0.90537 0.99150 1.14381 1.19214 0.84704 0.92477 0.96627 1.83506 1.27742 1.19681 1.83381 1.20656 0.96090 0.78819 1.52199 0.91351 1.25411 1.03274 0.95290 0.95144 1.69766 1.31992 1.05512 1.49525 0.85092 0.76469 0.79065 0.79271 1.18823 1.19238 1.17930 1.20430 0.99981 0.89049 1.07366 1.19942 0.86697 1.00503 1.00146 1.18879 0.87121 0.93841 1.12529 1.45268 1.03029 1.08919 1.60803 1.22361 1.03034 0.76592 1.04913 0.87749 0.86656 0.89039 0.88603 0.90521 0.82584 0.80953 0.89345 0.88621 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.17 71.24 0.72 -0.35 16 2 C 0.28 8.22 7.85 137.93 1.08 9.30 16 3 N -0.56 -23.79 11.27 -179.98 -2.03 -25.82 16 4 C 0.06 2.86 7.22 39.44 0.28 3.14 16 5 C -0.22 -11.62 9.21 22.62 0.21 -11.42 16 6 C 0.12 6.06 6.64 22.54 0.15 6.21 16 7 O -0.24 -13.38 8.58 -23.17 -0.20 -13.58 16 8 C -0.40 -25.27 9.94 67.92 0.67 -24.60 16 9 H 0.07 4.69 5.42 -2.91 -0.02 4.68 16 10 C 0.01 0.40 5.49 84.83 0.47 0.87 16 11 N -0.93 -58.16 13.96 21.61 0.30 -57.86 16 12 Si 0.98 46.48 28.62 68.60 1.96 48.44 16 13 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 15 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 16 C -0.15 -5.65 9.97 22.42 0.22 -5.43 16 17 C -0.05 -1.64 10.03 22.30 0.22 -1.41 16 18 C -0.02 -0.59 6.87 38.85 0.27 -0.32 16 19 N -0.49 -12.82 3.21 -528.69 -1.70 -14.52 16 20 C 0.07 0.84 10.96 127.77 1.40 2.24 16 21 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.12 0.86 7.01 -2.39 -0.02 0.84 16 23 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 24 H 0.10 5.77 5.61 -2.91 -0.02 5.75 16 25 H 0.29 16.27 8.31 -92.71 -0.77 15.50 16 26 H 0.16 4.99 8.06 -2.91 -0.02 4.96 16 27 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 28 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.12 0.63 6.99 -2.39 -0.02 0.61 16 Total: -1.00 -83.63 263.35 5.21 -78.42 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.16 Total: 6.67 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 5.71 Total: -21.76 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -3.42 Total: -98.19 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.20 Total: -13.58 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.96 Total: 48.44 kcal Total: -83.63 5.21 -78.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465796.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.390 kcal (2) G-P(sol) polarization free energy of solvation -83.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds