Wall clock time and date at job start Mon Mar 30 2020 03:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46878 * 2 1 4 4 N 1.40034 * 125.95714 * 89.97693 * 3 2 1 5 5 C 1.30916 * 109.56715 * 180.02562 * 4 3 2 6 6 O 1.35904 * 125.71798 * 180.02562 * 5 4 3 7 7 C 1.40934 * 108.57357 * 0.26314 * 5 4 3 8 8 C 1.37204 * 125.95062 * 270.01696 * 3 2 1 9 9 C 1.39267 * 133.67663 * 359.97159 * 8 3 2 10 10 C 1.38213 * 120.99174 * 179.97438 * 9 8 3 11 11 C 1.37789 * 121.53632 * 0.02562 * 10 9 8 12 12 C 1.40742 * 120.13761 * 359.97149 * 11 10 9 13 13 C 1.40573 * 120.69547 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00277 * 155.52322 * 13 12 11 15 15 C 1.40048 * 120.00194 * 335.52334 * 13 12 11 16 16 N 1.30791 * 120.00115 * 342.09905 * 15 13 12 17 17 Si 1.86803 * 120.00000 * 162.09287 * 15 13 12 18 18 H 1.48496 * 109.46961 * 90.00442 * 17 15 13 19 19 H 1.48499 * 109.47086 * 210.00042 * 17 15 13 20 20 H 1.48490 * 109.47270 * 330.00320 * 17 15 13 21 21 H 1.09002 * 109.47031 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46905 * 299.99507 * 1 2 3 23 23 H 1.08997 * 109.47401 * 60.00358 * 1 2 3 24 24 H 1.09006 * 109.46978 * 240.00203 * 2 1 3 25 25 H 1.08999 * 109.47592 * 120.00149 * 2 1 3 26 26 H 0.96698 * 114.00214 * 90.01931 * 6 5 4 27 27 H 1.08008 * 119.50530 * 359.96790 * 9 8 3 28 28 H 1.07996 * 119.23566 * 179.97438 * 10 9 8 29 29 H 1.08001 * 119.93028 * 180.02562 * 11 10 9 30 30 H 0.96999 * 120.00037 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2919 2.1566 1.1335 5 6 2.7101 3.3409 0.7641 6 8 3.0676 4.3521 1.5988 7 6 2.7224 3.3935 -0.6442 8 6 2.2864 2.1408 -1.1107 9 6 2.2029 1.9044 -2.4806 10 6 2.5478 2.8827 -3.3940 11 6 2.9862 4.1246 -2.9889 12 6 3.0918 4.4240 -1.6177 13 6 3.5372 5.6873 -1.1913 14 1 3.2571 6.0579 -0.2164 15 6 4.3443 6.4653 -2.0308 16 7 4.9698 5.9092 -3.0359 17 14 4.5274 8.2973 -1.7151 18 1 5.6781 8.5303 -0.8058 19 1 4.7631 9.0002 -3.0017 20 1 3.2867 8.8177 -1.0867 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 4.0040 4.3507 1.8399 27 1 1.8637 0.9420 -2.8346 28 1 2.4726 2.6686 -4.4498 29 1 3.2485 4.8700 -3.7250 30 1 5.5291 6.4480 -3.6171 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260692609.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:35 Heat of formation + Delta-G solvation = 37.151147 kcal Electronic energy + Delta-G solvation = -15876.365238 eV Core-core repulsion = 13252.000889 eV Total energy + Delta-G solvation = -2624.364349 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.03956 -36.49056 -35.93188 -33.60076 -33.10351 -29.91925 -28.56673 -27.56256 -25.22902 -22.94018 -21.51304 -20.54705 -19.72851 -17.73644 -16.35583 -15.89170 -15.48050 -14.96333 -14.67100 -13.90228 -13.58924 -13.31558 -12.95313 -12.74945 -12.04347 -11.84419 -11.59049 -11.48841 -11.26712 -11.04353 -10.85756 -10.61952 -10.16202 -10.05494 -9.67292 -9.36773 -9.08701 -8.46681 -7.34747 -7.01148 -6.76875 -4.48261 2.22267 2.86225 2.97258 3.03678 3.16370 3.27118 3.58305 3.77009 4.46383 4.88551 5.21587 5.41551 5.54822 5.60402 5.79960 5.96865 6.05475 6.36470 6.44351 6.50363 6.65495 6.83093 6.85146 7.11092 7.34321 7.54704 7.74235 7.91338 8.09988 8.27392 8.47433 8.49961 8.65305 8.71876 8.90729 9.88129 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.035098 B = 0.008534 C = 0.007140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.583353 B = 3280.034698 C = 3920.375059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.152 3.848 3 N -0.411 5.411 4 N -0.338 5.338 5 C 0.298 3.702 6 O -0.463 6.463 7 C -0.280 4.280 8 C 0.178 3.822 9 C -0.303 4.303 10 C -0.031 4.031 11 C -0.235 4.235 12 C 0.179 3.821 13 C -0.421 4.421 14 H 0.094 0.906 15 C 0.073 3.927 16 N -0.762 5.762 17 Si 0.915 3.085 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.256 1.256 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.389 0.611 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 -3.596 1.306 4.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.030 3.970 3 N -0.204 5.204 4 N -0.167 5.167 5 C 0.088 3.912 6 O -0.266 6.266 7 C -0.289 4.289 8 C 0.065 3.935 9 C -0.327 4.327 10 C -0.052 4.052 11 C -0.255 4.255 12 C 0.173 3.827 13 C -0.449 4.449 14 H 0.112 0.888 15 C -0.150 4.150 16 N -0.385 5.385 17 Si 0.738 3.262 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.180 1.180 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.244 0.756 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.137 0.863 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.207 -4.200 2.127 5.199 hybrid contribution 0.822 1.055 -0.582 1.458 sum -1.385 -3.145 1.545 3.767 Atomic orbital electron populations 1.22221 0.95933 1.01698 1.03001 1.21206 0.94048 0.79032 1.02736 1.47694 1.60524 1.10803 1.01339 1.76609 1.26685 1.04208 1.09163 1.19502 0.97694 0.86478 0.87527 1.84770 1.31129 1.44280 1.66392 1.19914 1.21128 0.96030 0.91873 1.18528 0.95948 0.89937 0.89086 1.18989 1.24224 1.00815 0.88680 1.20353 0.94923 0.93361 0.96514 1.20969 1.11906 0.97261 0.95412 1.18035 0.85024 0.89598 0.90033 1.19816 1.23367 0.99325 1.02374 0.88780 1.26160 0.93563 1.01582 0.93651 1.69849 1.18166 1.38303 1.12136 0.86188 0.80167 0.80839 0.79025 1.19083 1.19812 1.17950 0.91648 0.92180 0.92078 0.89979 0.90216 0.75561 0.89495 0.88999 0.86286 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 10.24 37.16 0.38 -2.06 16 2 C 0.15 2.48 7.14 -4.04 -0.03 2.45 16 3 N -0.41 -9.00 3.67 -58.73 -0.22 -9.21 16 4 N -0.34 -7.93 12.49 30.65 0.38 -7.54 16 5 C 0.30 7.21 8.40 -16.92 -0.14 7.07 16 6 O -0.46 -9.86 12.61 -19.44 -0.25 -10.11 16 7 C -0.28 -7.26 6.21 -104.66 -0.65 -7.91 16 8 C 0.18 4.33 6.88 -84.19 -0.58 3.75 16 9 C -0.30 -6.96 9.98 -39.21 -0.39 -7.35 16 10 C -0.03 -0.71 9.94 -39.75 -0.40 -1.11 16 11 C -0.23 -6.00 8.70 -38.80 -0.34 -6.33 16 12 C 0.18 4.74 5.73 -104.75 -0.60 4.14 16 13 C -0.42 -10.70 8.86 -38.02 -0.34 -11.04 16 14 H 0.09 2.35 7.04 -52.49 -0.37 1.98 16 15 C 0.07 1.71 5.15 -17.32 -0.09 1.62 16 16 N -0.76 -18.36 10.98 55.55 0.61 -17.75 16 17 Si 0.91 17.47 29.60 -169.99 -5.03 12.44 16 18 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 19 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.39 6.38 9.06 45.56 0.41 6.79 16 27 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 28 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.12 3.07 6.18 -52.49 -0.32 2.74 16 30 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 LS Contribution 265.29 15.07 4.00 4.00 Total: -1.00 -29.70 265.29 -6.05 -35.75 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -2.37 Total: 9.18 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -3.17 Total: -16.76 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.78 Total: -34.50 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.25 Total: -10.11 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.70 -6.05 -35.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260692609.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.900 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds