Wall clock time and date at job start Mon Mar 30 2020 03:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46878 * 2 1 4 4 N 1.40034 * 125.95714 * 89.97693 * 3 2 1 5 5 C 1.30916 * 109.56715 * 180.02562 * 4 3 2 6 6 O 1.35904 * 125.71798 * 180.02562 * 5 4 3 7 7 C 1.40934 * 108.57357 * 0.26314 * 5 4 3 8 8 C 1.37204 * 125.95062 * 270.01696 * 3 2 1 9 9 C 1.39267 * 133.67663 * 359.97159 * 8 3 2 10 10 C 1.38213 * 120.99174 * 179.97438 * 9 8 3 11 11 C 1.37789 * 121.53632 * 0.02562 * 10 9 8 12 12 C 1.40742 * 120.13761 * 359.97149 * 11 10 9 13 13 C 1.40573 * 120.69547 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00277 * 155.52322 * 13 12 11 15 15 C 1.40048 * 120.00194 * 335.52334 * 13 12 11 16 16 N 1.30791 * 120.00115 * 342.09905 * 15 13 12 17 17 Si 1.86803 * 120.00000 * 162.09287 * 15 13 12 18 18 H 1.48496 * 109.46961 * 90.00442 * 17 15 13 19 19 H 1.48499 * 109.47086 * 210.00042 * 17 15 13 20 20 H 1.48490 * 109.47270 * 330.00320 * 17 15 13 21 21 H 1.09002 * 109.47031 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46905 * 299.99507 * 1 2 3 23 23 H 1.08997 * 109.47401 * 60.00358 * 1 2 3 24 24 H 1.09006 * 109.46978 * 240.00203 * 2 1 3 25 25 H 1.08999 * 109.47592 * 120.00149 * 2 1 3 26 26 H 0.96698 * 114.00214 * 90.01931 * 6 5 4 27 27 H 1.08008 * 119.50530 * 359.96790 * 9 8 3 28 28 H 1.07996 * 119.23566 * 179.97438 * 10 9 8 29 29 H 1.08001 * 119.93028 * 180.02562 * 11 10 9 30 30 H 0.96999 * 120.00037 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2919 2.1566 1.1335 5 6 2.7101 3.3409 0.7641 6 8 3.0676 4.3521 1.5988 7 6 2.7224 3.3935 -0.6442 8 6 2.2864 2.1408 -1.1107 9 6 2.2029 1.9044 -2.4806 10 6 2.5478 2.8827 -3.3940 11 6 2.9862 4.1246 -2.9889 12 6 3.0918 4.4240 -1.6177 13 6 3.5372 5.6873 -1.1913 14 1 3.2571 6.0579 -0.2164 15 6 4.3443 6.4653 -2.0308 16 7 4.9698 5.9092 -3.0359 17 14 4.5274 8.2973 -1.7151 18 1 5.6781 8.5303 -0.8058 19 1 4.7631 9.0002 -3.0017 20 1 3.2867 8.8177 -1.0867 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 4.0040 4.3507 1.8399 27 1 1.8637 0.9420 -2.8346 28 1 2.4726 2.6686 -4.4498 29 1 3.2485 4.8700 -3.7250 30 1 5.5291 6.4480 -3.6171 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260692609.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:35 Heat of formation + Delta-G solvation = 15.932728 kcal Electronic energy + Delta-G solvation = -15877.285338 eV Core-core repulsion = 13252.000889 eV Total energy + Delta-G solvation = -2625.284449 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.81486 -38.19907 -37.71416 -35.36853 -34.58677 -31.69673 -30.36348 -29.19230 -27.07230 -24.37324 -23.33489 -22.36283 -21.40821 -19.49513 -18.14388 -17.61956 -17.23268 -16.57376 -16.33696 -15.51800 -15.16957 -14.93936 -14.54538 -14.46510 -13.53710 -13.40930 -13.17576 -13.01568 -12.86319 -12.73963 -12.25439 -12.10177 -11.93150 -11.81422 -11.46966 -11.12360 -10.89626 -10.24862 -9.20194 -8.78777 -8.57275 -6.36567 0.41051 1.17517 1.40586 1.47801 1.55036 1.64627 1.80181 2.17884 2.66747 3.21375 3.66952 3.91759 4.19771 4.23464 4.42338 4.53126 4.67742 4.72710 4.84104 5.00785 5.06506 5.07485 5.23355 5.31699 5.51232 5.76949 5.90564 6.08556 6.22285 6.48777 6.68157 6.75244 6.85870 6.88892 7.06909 8.15165 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.035098 B = 0.008534 C = 0.007140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.583353 B = 3280.034698 C = 3920.375059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 N -0.405 5.405 4 N -0.342 5.342 5 C 0.285 3.715 6 O -0.466 6.466 7 C -0.314 4.314 8 C 0.163 3.837 9 C -0.301 4.301 10 C -0.032 4.032 11 C -0.263 4.263 12 C 0.150 3.850 13 C -0.449 4.449 14 H 0.088 0.912 15 C 0.039 3.961 16 N -0.789 5.789 17 Si 0.987 3.013 18 H -0.256 1.256 19 H -0.261 1.261 20 H -0.261 1.261 21 H 0.107 0.893 22 H 0.044 0.956 23 H 0.046 0.954 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.408 0.592 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 -4.288 1.217 4.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 N -0.198 5.198 4 N -0.171 5.171 5 C 0.075 3.925 6 O -0.271 6.271 7 C -0.324 4.324 8 C 0.048 3.952 9 C -0.326 4.326 10 C -0.052 4.052 11 C -0.284 4.284 12 C 0.145 3.855 13 C -0.476 4.476 14 H 0.106 0.894 15 C -0.182 4.182 16 N -0.411 5.411 17 Si 0.807 3.193 18 H -0.180 1.180 19 H -0.185 1.185 20 H -0.185 1.185 21 H 0.125 0.875 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.121 0.879 25 H 0.117 0.883 26 H 0.266 0.734 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.126 0.874 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.389 -4.933 2.049 5.851 hybrid contribution 0.861 1.126 -0.523 1.511 sum -1.528 -3.806 1.526 4.376 Atomic orbital electron populations 1.22154 0.94253 1.03967 1.01522 1.21753 0.95431 0.76410 1.04722 1.48179 1.59519 1.12049 1.00096 1.76536 1.26347 1.04086 1.10161 1.19619 0.98347 0.87104 0.87454 1.84709 1.32883 1.43765 1.65791 1.20319 1.22209 0.97033 0.92861 1.18823 0.96064 0.90076 0.90209 1.19320 1.23235 1.01905 0.88094 1.20685 0.93693 0.92563 0.98284 1.20986 1.14036 0.98337 0.95025 1.18400 0.85854 0.90469 0.90809 1.19974 1.24717 0.99993 1.02916 0.89393 1.26952 0.92479 1.05711 0.93011 1.69865 1.18334 1.40212 1.12722 0.85120 0.79947 0.74903 0.79377 1.18039 1.18485 1.18498 0.87466 0.93688 0.93458 0.87895 0.88348 0.73404 0.86448 0.86016 0.87353 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 10.24 71.98 0.74 -3.44 16 2 C 0.14 4.09 7.14 86.38 0.62 4.70 16 3 N -0.41 -17.26 3.67 -339.71 -1.25 -18.51 16 4 N -0.34 -15.90 12.49 -170.35 -2.13 -18.02 16 5 C 0.28 13.95 8.40 85.49 0.72 14.66 16 6 O -0.47 -20.12 12.61 -92.47 -1.17 -21.28 16 7 C -0.31 -16.60 6.21 -19.89 -0.12 -16.72 16 8 C 0.16 7.85 6.88 39.13 0.27 8.12 16 9 C -0.30 -13.44 9.98 22.51 0.22 -13.21 16 10 C -0.03 -1.45 9.94 22.16 0.22 -1.23 16 11 C -0.26 -13.71 8.70 22.78 0.20 -13.51 16 12 C 0.15 8.19 5.73 -19.94 -0.11 8.08 16 13 C -0.45 -23.45 8.86 23.28 0.21 -23.24 16 14 H 0.09 4.53 7.04 -2.91 -0.02 4.51 16 15 C 0.04 1.83 5.15 85.29 0.44 2.27 16 16 N -0.79 -38.39 10.98 21.85 0.24 -38.15 16 17 Si 0.99 35.67 29.60 68.60 2.03 37.70 16 18 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 19 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 20 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 21 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 25 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.41 13.52 9.06 -74.06 -0.67 12.85 16 27 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 28 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 29 H 0.11 5.75 6.18 -2.91 -0.02 5.73 16 30 H 0.30 12.80 8.30 -92.71 -0.77 12.03 16 Total: -1.00 -64.56 265.29 1.62 -62.95 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.50 Total: 28.85 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 3.39 Total: -33.52 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -3.14 Total: -74.69 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -1.17 Total: -21.28 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Total: -64.56 1.62 -62.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260692609.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.880 kcal (2) G-P(sol) polarization free energy of solvation -64.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds