Wall clock time and date at job start Mon Mar 30 2020 03:40:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35508 * 116.99981 * 2 1
4 4 C 1.35514 * 119.77539 * 5.42639 * 3 2 1
5 5 C 1.40535 * 120.53698 * 180.02562 * 4 3 2
6 6 C 1.35986 * 119.81076 * 359.97438 * 5 4 3
7 7 C 1.40986 * 119.28125 * 359.97438 * 6 5 4
8 8 C 1.37985 * 133.66561 * 179.97438 * 7 6 5
9 9 N 1.33477 * 107.61568 * 180.02562 * 8 7 6
10 10 C 1.30843 * 109.91621 * 359.97438 * 9 8 7
11 11 C 1.50705 * 125.38690 * 179.97438 * 10 9 8
12 12 C 1.50699 * 109.47212 * 95.02889 * 11 10 9
13 13 H 1.08001 * 120.00013 * 0.02562 * 12 11 10
14 14 C 1.37877 * 120.00033 * 180.02562 * 12 11 10
15 15 N 1.31519 * 119.99893 * 0.02562 * 14 12 11
16 16 Si 1.86790 * 119.99918 * 180.02562 * 14 12 11
17 17 H 1.48500 * 109.47772 * 90.00068 * 16 14 12
18 18 H 1.48501 * 109.47116 * 209.99786 * 16 14 12
19 19 H 1.48497 * 109.47247 * 329.99743 * 16 14 12
20 20 N 1.35817 * 109.22655 * 359.76895 * 10 9 8
21 21 H 1.09004 * 109.47555 * 175.08632 * 1 2 3
22 22 H 1.08995 * 109.47402 * 295.09119 * 1 2 3
23 23 H 1.09006 * 109.47292 * 55.09261 * 1 2 3
24 24 H 1.08008 * 119.73518 * 0.02562 * 4 3 2
25 25 H 1.08001 * 120.09897 * 180.02562 * 5 4 3
26 26 H 1.08006 * 120.35917 * 180.02562 * 6 5 4
27 27 H 1.07992 * 126.19292 * 0.06294 * 8 7 6
28 28 H 1.09002 * 109.46903 * 215.03645 * 11 10 9
29 29 H 1.09005 * 109.46852 * 335.02792 * 11 10 9
30 30 H 0.96997 * 119.99729 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0442 1.2074 0.0000
4 6 1.3064 2.3386 0.1112
5 6 1.9277 3.5991 0.1125
6 6 3.2803 3.6863 0.0017
7 6 4.0403 2.5043 -0.1125
8 6 5.3904 2.2482 -0.2379
9 7 5.5456 0.9243 -0.3073
10 6 4.3801 0.3343 -0.2328
11 6 4.1512 -1.1546 -0.2769
12 6 4.0727 -1.6926 1.1285
13 1 4.1777 -1.0233 1.9696
14 6 3.8670 -3.0393 1.3407
15 7 3.7397 -3.8544 0.3164
16 14 3.7690 -3.7061 3.0828
17 1 2.3592 -3.6709 3.5479
18 1 4.2627 -5.1065 3.1053
19 1 4.6073 -2.8712 3.9802
20 7 3.4096 1.2759 -0.1049
21 1 -0.3634 -1.0239 -0.0880
22 1 -0.3634 0.4358 0.9306
23 1 -0.3634 0.5881 -0.8428
24 1 0.2320 2.2710 0.1997
25 1 1.3329 4.4961 0.2019
26 1 3.7670 4.6504 0.0021
27 1 6.1788 2.9854 -0.2730
28 1 3.2172 -1.3632 -0.7987
29 1 4.9765 -1.6336 -0.8039
30 1 3.5945 -4.8018 0.4657
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260699846.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:40:22
Heat of formation + Delta-G solvation = 51.663635 kcal
Electronic energy + Delta-G solvation = -16052.253174 eV
Core-core repulsion = 13428.518133 eV
Total energy + Delta-G solvation = -2623.735041 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 232.095 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-42.15762 -39.07362 -36.16163 -33.31354 -32.53180 -30.32882 -29.10508 -27.45934
-26.24500 -23.32250 -22.78892 -21.69472 -20.30727 -17.52417 -16.91927 -16.50718
-15.90418 -15.83574 -15.00088 -14.58423 -14.48955 -14.21383 -13.49854 -12.56054
-12.35035 -12.17934 -11.78499 -11.67312 -11.49987 -11.04834 -10.88767 -10.70067
-10.59502 -9.91460 -9.79951 -9.48655 -9.44380 -8.52342 -8.42193 -6.63369
-6.02016 -4.06102 1.35432 1.78044 2.51269 3.30133 3.36440 3.41880
3.77287 3.89324 3.91806 4.45935 4.91604 5.10111 5.15015 5.24908
5.31508 5.35123 5.39086 5.48423 5.63581 5.86619 6.08933 6.28256
6.32653 6.56424 6.74763 7.15718 7.42957 7.54116 7.57434 7.81008
7.90005 8.26421 8.74094 8.93411 9.55706 11.06387
Molecular weight = 232.10amu
Principal moments of inertia in cm(-1)
A = 0.026544 B = 0.009482 C = 0.007907
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1054.598822 B = 2952.236078 C = 3540.182335
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.285 6.285
3 C 0.333 3.667
4 C -0.275 4.275
5 C -0.096 4.096
6 C -0.117 4.117
7 C -0.008 4.008
8 C -0.029 4.029
9 N -0.466 5.466
10 C 0.247 3.753
11 C 0.097 3.903
12 C -0.502 4.502
13 H 0.052 0.948
14 C 0.063 3.937
15 N -0.893 5.893
16 Si 0.896 3.104
17 H -0.281 1.281
18 H -0.284 1.284
19 H -0.274 1.274
20 N -0.379 5.379
21 H 0.109 0.891
22 H 0.058 0.942
23 H 0.057 0.943
24 H 0.141 0.859
25 H 0.127 0.873
26 H 0.137 0.863
27 H 0.174 0.826
28 H 0.045 0.955
29 H 0.053 0.947
30 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.665 11.919 -1.179 14.220
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.194 6.194
3 C 0.184 3.816
4 C -0.297 4.297
5 C -0.117 4.117
6 C -0.137 4.137
7 C -0.114 4.114
8 C -0.180 4.180
9 N -0.180 5.180
10 C -0.010 4.010
11 C 0.058 3.942
12 C -0.542 4.542
13 H 0.071 0.929
14 C -0.139 4.139
15 N -0.532 5.532
16 Si 0.724 3.276
17 H -0.207 1.207
18 H -0.210 1.210
19 H -0.199 1.199
20 N -0.058 5.058
21 H 0.127 0.873
22 H 0.077 0.923
23 H 0.076 0.924
24 H 0.159 0.841
25 H 0.145 0.855
26 H 0.155 0.845
27 H 0.191 0.809
28 H 0.063 0.937
29 H 0.071 0.929
30 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -6.864 10.984 -1.309 13.019
hybrid contribution -1.066 0.187 1.129 1.564
sum -7.930 11.171 -0.180 13.701
Atomic orbital electron populations
1.23172 0.76652 1.04714 1.01277 1.86197 1.21906 1.24304 1.86974
1.18334 0.81810 0.86400 0.95046 1.20370 1.00038 0.90874 1.18398
1.20543 0.94173 0.96466 1.00483 1.20202 0.93275 0.95586 1.04636
1.19430 0.93813 0.84374 1.13746 1.22486 0.92083 0.93258 1.10221
1.70137 1.23238 1.05947 1.18677 1.25036 0.80212 0.95051 1.00685
1.17952 0.99067 0.78185 0.98974 1.20838 1.49610 0.92835 0.90880
0.92934 1.24894 0.95168 0.96671 0.97146 1.69945 1.49407 1.04030
1.29791 0.86518 0.78190 0.78231 0.84656 1.20718 1.21015 1.19858
1.42860 1.03669 1.09320 1.49984 0.87313 0.92297 0.92408 0.84094
0.85488 0.84541 0.80901 0.93708 0.92880 0.92800
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.48 9.80 101.05 0.99 1.47 16
2 O -0.28 -5.57 8.77 -18.22 -0.16 -5.73 16
3 C 0.33 6.46 7.64 -16.16 -0.12 6.33 16
4 C -0.27 -4.18 8.98 -39.69 -0.36 -4.53 16
5 C -0.10 -1.32 10.06 -39.52 -0.40 -1.72 16
6 C -0.12 -1.77 10.11 -39.35 -0.40 -2.17 16
7 C -0.01 -0.16 6.80 -84.10 -0.57 -0.73 16
8 C -0.03 -0.58 12.01 -16.93 -0.20 -0.78 16
9 N -0.47 -11.24 11.19 -9.93 -0.11 -11.35 16
10 C 0.25 6.16 7.18 -154.42 -1.11 5.05 16
11 C 0.10 2.65 4.99 -29.03 -0.14 2.50 16
12 C -0.50 -14.58 9.09 -34.44 -0.31 -14.89 16
13 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16
14 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16
15 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16
16 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16
17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
18 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16
19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16
20 N -0.38 -8.35 2.97 -58.14 -0.17 -8.52 16
21 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16
22 H 0.06 0.64 7.67 -51.93 -0.40 0.25 16
23 H 0.06 0.60 7.59 -51.93 -0.39 0.20 16
24 H 0.14 1.66 6.16 -52.48 -0.32 1.33 16
25 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16
26 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16
27 H 0.17 2.70 8.06 -52.49 -0.42 2.28 16
28 H 0.04 1.25 7.01 -51.93 -0.36 0.89 16
29 H 0.05 1.54 8.14 -51.93 -0.42 1.11 16
30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16
LS Contribution 264.13 15.07 3.98 3.98
Total: -1.00 -33.45 264.13 -6.61 -40.06
By element:
Atomic # 1 Polarization: 1.13 SS G_CDS: -3.13 Total: -2.01 kcal
Atomic # 6 Polarization: -5.05 SS G_CDS: -2.72 Total: -7.77 kcal
Atomic # 7 Polarization: -45.88 SS G_CDS: 0.45 Total: -45.43 kcal
Atomic # 8 Polarization: -5.57 SS G_CDS: -0.16 Total: -5.73 kcal
Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal
Total LS contribution 3.98 Total: 3.98 kcal
Total: -33.45 -6.61 -40.06 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260699846.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.722 kcal
(2) G-P(sol) polarization free energy of solvation -33.451 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.271 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.664 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds