Wall clock time and date at job start Mon Mar 30 2020 03:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35508 * 116.99981 * 2 1 4 4 C 1.35514 * 119.77539 * 5.42639 * 3 2 1 5 5 C 1.40535 * 120.53698 * 180.02562 * 4 3 2 6 6 C 1.35986 * 119.81076 * 359.97438 * 5 4 3 7 7 C 1.40986 * 119.28125 * 359.97438 * 6 5 4 8 8 C 1.37985 * 133.66561 * 179.97438 * 7 6 5 9 9 N 1.33477 * 107.61568 * 180.02562 * 8 7 6 10 10 C 1.30843 * 109.91621 * 359.97438 * 9 8 7 11 11 C 1.50705 * 125.38690 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47212 * 95.02889 * 11 10 9 13 13 H 1.08001 * 120.00013 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00033 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99893 * 0.02562 * 14 12 11 16 16 Si 1.86790 * 119.99918 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47772 * 90.00068 * 16 14 12 18 18 H 1.48501 * 109.47116 * 209.99786 * 16 14 12 19 19 H 1.48497 * 109.47247 * 329.99743 * 16 14 12 20 20 N 1.35817 * 109.22655 * 359.76895 * 10 9 8 21 21 H 1.09004 * 109.47555 * 175.08632 * 1 2 3 22 22 H 1.08995 * 109.47402 * 295.09119 * 1 2 3 23 23 H 1.09006 * 109.47292 * 55.09261 * 1 2 3 24 24 H 1.08008 * 119.73518 * 0.02562 * 4 3 2 25 25 H 1.08001 * 120.09897 * 180.02562 * 5 4 3 26 26 H 1.08006 * 120.35917 * 180.02562 * 6 5 4 27 27 H 1.07992 * 126.19292 * 0.06294 * 8 7 6 28 28 H 1.09002 * 109.46903 * 215.03645 * 11 10 9 29 29 H 1.09005 * 109.46852 * 335.02792 * 11 10 9 30 30 H 0.96997 * 119.99729 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3064 2.3386 0.1112 5 6 1.9277 3.5991 0.1125 6 6 3.2803 3.6863 0.0017 7 6 4.0403 2.5043 -0.1125 8 6 5.3904 2.2482 -0.2379 9 7 5.5456 0.9243 -0.3073 10 6 4.3801 0.3343 -0.2328 11 6 4.1512 -1.1546 -0.2769 12 6 4.0727 -1.6926 1.1285 13 1 4.1777 -1.0233 1.9696 14 6 3.8670 -3.0393 1.3407 15 7 3.7397 -3.8544 0.3164 16 14 3.7690 -3.7061 3.0828 17 1 2.3592 -3.6709 3.5479 18 1 4.2627 -5.1065 3.1053 19 1 4.6073 -2.8712 3.9802 20 7 3.4096 1.2759 -0.1049 21 1 -0.3634 -1.0239 -0.0880 22 1 -0.3634 0.4358 0.9306 23 1 -0.3634 0.5881 -0.8428 24 1 0.2320 2.2710 0.1997 25 1 1.3329 4.4961 0.2019 26 1 3.7670 4.6504 0.0021 27 1 6.1788 2.9854 -0.2730 28 1 3.2172 -1.3632 -0.7987 29 1 4.9765 -1.6336 -0.8039 30 1 3.5945 -4.8018 0.4657 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260699846.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:22 Heat of formation + Delta-G solvation = 51.663635 kcal Electronic energy + Delta-G solvation = -16052.253174 eV Core-core repulsion = 13428.518133 eV Total energy + Delta-G solvation = -2623.735041 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.15762 -39.07362 -36.16163 -33.31354 -32.53180 -30.32882 -29.10508 -27.45934 -26.24500 -23.32250 -22.78892 -21.69472 -20.30727 -17.52417 -16.91927 -16.50718 -15.90418 -15.83574 -15.00088 -14.58423 -14.48955 -14.21383 -13.49854 -12.56054 -12.35035 -12.17934 -11.78499 -11.67312 -11.49987 -11.04834 -10.88767 -10.70067 -10.59502 -9.91460 -9.79951 -9.48655 -9.44380 -8.52342 -8.42193 -6.63369 -6.02016 -4.06102 1.35432 1.78044 2.51269 3.30133 3.36440 3.41880 3.77287 3.89324 3.91806 4.45935 4.91604 5.10111 5.15015 5.24908 5.31508 5.35123 5.39086 5.48423 5.63581 5.86619 6.08933 6.28256 6.32653 6.56424 6.74763 7.15718 7.42957 7.54116 7.57434 7.81008 7.90005 8.26421 8.74094 8.93411 9.55706 11.06387 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.026544 B = 0.009482 C = 0.007907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.598822 B = 2952.236078 C = 3540.182335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.285 6.285 3 C 0.333 3.667 4 C -0.275 4.275 5 C -0.096 4.096 6 C -0.117 4.117 7 C -0.008 4.008 8 C -0.029 4.029 9 N -0.466 5.466 10 C 0.247 3.753 11 C 0.097 3.903 12 C -0.502 4.502 13 H 0.052 0.948 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.284 1.284 19 H -0.274 1.274 20 N -0.379 5.379 21 H 0.109 0.891 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.141 0.859 25 H 0.127 0.873 26 H 0.137 0.863 27 H 0.174 0.826 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 11.919 -1.179 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.194 6.194 3 C 0.184 3.816 4 C -0.297 4.297 5 C -0.117 4.117 6 C -0.137 4.137 7 C -0.114 4.114 8 C -0.180 4.180 9 N -0.180 5.180 10 C -0.010 4.010 11 C 0.058 3.942 12 C -0.542 4.542 13 H 0.071 0.929 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.210 1.210 19 H -0.199 1.199 20 N -0.058 5.058 21 H 0.127 0.873 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.159 0.841 25 H 0.145 0.855 26 H 0.155 0.845 27 H 0.191 0.809 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.864 10.984 -1.309 13.019 hybrid contribution -1.066 0.187 1.129 1.564 sum -7.930 11.171 -0.180 13.701 Atomic orbital electron populations 1.23172 0.76652 1.04714 1.01277 1.86197 1.21906 1.24304 1.86974 1.18334 0.81810 0.86400 0.95046 1.20370 1.00038 0.90874 1.18398 1.20543 0.94173 0.96466 1.00483 1.20202 0.93275 0.95586 1.04636 1.19430 0.93813 0.84374 1.13746 1.22486 0.92083 0.93258 1.10221 1.70137 1.23238 1.05947 1.18677 1.25036 0.80212 0.95051 1.00685 1.17952 0.99067 0.78185 0.98974 1.20838 1.49610 0.92835 0.90880 0.92934 1.24894 0.95168 0.96671 0.97146 1.69945 1.49407 1.04030 1.29791 0.86518 0.78190 0.78231 0.84656 1.20718 1.21015 1.19858 1.42860 1.03669 1.09320 1.49984 0.87313 0.92297 0.92408 0.84094 0.85488 0.84541 0.80901 0.93708 0.92880 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 9.80 101.05 0.99 1.47 16 2 O -0.28 -5.57 8.77 -18.22 -0.16 -5.73 16 3 C 0.33 6.46 7.64 -16.16 -0.12 6.33 16 4 C -0.27 -4.18 8.98 -39.69 -0.36 -4.53 16 5 C -0.10 -1.32 10.06 -39.52 -0.40 -1.72 16 6 C -0.12 -1.77 10.11 -39.35 -0.40 -2.17 16 7 C -0.01 -0.16 6.80 -84.10 -0.57 -0.73 16 8 C -0.03 -0.58 12.01 -16.93 -0.20 -0.78 16 9 N -0.47 -11.24 11.19 -9.93 -0.11 -11.35 16 10 C 0.25 6.16 7.18 -154.42 -1.11 5.05 16 11 C 0.10 2.65 4.99 -29.03 -0.14 2.50 16 12 C -0.50 -14.58 9.09 -34.44 -0.31 -14.89 16 13 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 16 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 N -0.38 -8.35 2.97 -58.14 -0.17 -8.52 16 21 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 22 H 0.06 0.64 7.67 -51.93 -0.40 0.25 16 23 H 0.06 0.60 7.59 -51.93 -0.39 0.20 16 24 H 0.14 1.66 6.16 -52.48 -0.32 1.33 16 25 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 26 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 27 H 0.17 2.70 8.06 -52.49 -0.42 2.28 16 28 H 0.04 1.25 7.01 -51.93 -0.36 0.89 16 29 H 0.05 1.54 8.14 -51.93 -0.42 1.11 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 264.13 15.07 3.98 3.98 Total: -1.00 -33.45 264.13 -6.61 -40.06 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -3.13 Total: -2.01 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.72 Total: -7.77 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.45 Total: -45.43 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.16 Total: -5.73 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.45 -6.61 -40.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260699846.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.722 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds