Wall clock time and date at job start Mon Mar 30 2020 03:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35508 * 116.99981 * 2 1 4 4 C 1.35514 * 119.77539 * 5.42639 * 3 2 1 5 5 C 1.40535 * 120.53698 * 180.02562 * 4 3 2 6 6 C 1.35986 * 119.81076 * 359.97438 * 5 4 3 7 7 C 1.40986 * 119.28125 * 359.97438 * 6 5 4 8 8 C 1.37985 * 133.66561 * 179.97438 * 7 6 5 9 9 N 1.33477 * 107.61568 * 180.02562 * 8 7 6 10 10 C 1.30843 * 109.91621 * 359.97438 * 9 8 7 11 11 C 1.50705 * 125.38690 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47212 * 95.02889 * 11 10 9 13 13 H 1.08001 * 120.00013 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00033 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99893 * 0.02562 * 14 12 11 16 16 Si 1.86790 * 119.99918 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47772 * 90.00068 * 16 14 12 18 18 H 1.48501 * 109.47116 * 209.99786 * 16 14 12 19 19 H 1.48497 * 109.47247 * 329.99743 * 16 14 12 20 20 N 1.35817 * 109.22655 * 359.76895 * 10 9 8 21 21 H 1.09004 * 109.47555 * 175.08632 * 1 2 3 22 22 H 1.08995 * 109.47402 * 295.09119 * 1 2 3 23 23 H 1.09006 * 109.47292 * 55.09261 * 1 2 3 24 24 H 1.08008 * 119.73518 * 0.02562 * 4 3 2 25 25 H 1.08001 * 120.09897 * 180.02562 * 5 4 3 26 26 H 1.08006 * 120.35917 * 180.02562 * 6 5 4 27 27 H 1.07992 * 126.19292 * 0.06294 * 8 7 6 28 28 H 1.09002 * 109.46903 * 215.03645 * 11 10 9 29 29 H 1.09005 * 109.46852 * 335.02792 * 11 10 9 30 30 H 0.96997 * 119.99729 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3064 2.3386 0.1112 5 6 1.9277 3.5991 0.1125 6 6 3.2803 3.6863 0.0017 7 6 4.0403 2.5043 -0.1125 8 6 5.3904 2.2482 -0.2379 9 7 5.5456 0.9243 -0.3073 10 6 4.3801 0.3343 -0.2328 11 6 4.1512 -1.1546 -0.2769 12 6 4.0727 -1.6926 1.1285 13 1 4.1777 -1.0233 1.9696 14 6 3.8670 -3.0393 1.3407 15 7 3.7397 -3.8544 0.3164 16 14 3.7690 -3.7061 3.0828 17 1 2.3592 -3.6709 3.5479 18 1 4.2627 -5.1065 3.1053 19 1 4.6073 -2.8712 3.9802 20 7 3.4096 1.2759 -0.1049 21 1 -0.3634 -1.0239 -0.0880 22 1 -0.3634 0.4358 0.9306 23 1 -0.3634 0.5881 -0.8428 24 1 0.2320 2.2710 0.1997 25 1 1.3329 4.4961 0.2019 26 1 3.7670 4.6504 0.0021 27 1 6.1788 2.9854 -0.2730 28 1 3.2172 -1.3632 -0.7987 29 1 4.9765 -1.6336 -0.8039 30 1 3.5945 -4.8018 0.4657 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260699846.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:22 Heat of formation + Delta-G solvation = 29.270443 kcal Electronic energy + Delta-G solvation = -16053.224215 eV Core-core repulsion = 13428.518133 eV Total energy + Delta-G solvation = -2624.706082 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.66813 -40.38915 -37.52393 -35.40098 -34.05366 -32.06983 -30.71954 -28.54191 -27.91913 -25.29256 -24.17046 -23.16232 -21.86039 -18.93814 -18.65507 -18.26045 -17.38039 -17.21695 -16.58207 -16.15778 -15.90478 -15.57211 -14.87542 -14.45101 -14.18702 -13.60566 -13.43307 -13.06211 -12.88803 -12.69327 -12.67074 -12.20627 -12.06095 -11.98778 -11.54289 -11.25060 -11.14043 -10.63548 -9.98197 -8.32405 -7.95924 -6.35199 0.06142 0.36222 1.21054 1.34461 1.37450 1.48667 2.11974 2.40582 2.54996 2.58997 3.07958 3.72332 3.77982 3.92033 4.02346 4.22551 4.32258 4.35247 4.45591 4.68102 4.71881 4.87557 5.12603 5.17969 5.27903 5.37516 5.57784 5.64811 5.82743 6.03162 6.24864 6.33171 6.67966 7.11388 7.30823 8.87165 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.026544 B = 0.009482 C = 0.007907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.598822 B = 2952.236078 C = 3540.182335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.332 6.332 3 C 0.277 3.723 4 C -0.240 4.240 5 C -0.080 4.080 6 C -0.122 4.122 7 C 0.000 4.000 8 C -0.056 4.056 9 N -0.493 5.493 10 C 0.184 3.816 11 C 0.117 3.883 12 C -0.518 4.518 13 H 0.036 0.964 14 C 0.014 3.986 15 N -0.923 5.923 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.275 1.275 20 N -0.382 5.382 21 H 0.109 0.891 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.182 0.818 25 H 0.182 0.818 26 H 0.181 0.819 27 H 0.210 0.790 28 H 0.024 0.976 29 H 0.016 0.984 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 14.885 0.061 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.243 6.243 3 C 0.130 3.870 4 C -0.262 4.262 5 C -0.101 4.101 6 C -0.142 4.142 7 C -0.106 4.106 8 C -0.207 4.207 9 N -0.208 5.208 10 C -0.072 4.072 11 C 0.079 3.921 12 C -0.557 4.557 13 H 0.054 0.946 14 C -0.184 4.184 15 N -0.562 5.562 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.200 1.200 20 N -0.061 5.061 21 H 0.127 0.873 22 H 0.099 0.901 23 H 0.103 0.897 24 H 0.199 0.801 25 H 0.200 0.800 26 H 0.198 0.802 27 H 0.227 0.773 28 H 0.042 0.958 29 H 0.034 0.966 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.056 13.941 -0.077 16.624 hybrid contribution -0.559 -0.520 0.706 1.040 sum -9.615 13.421 0.629 16.521 Atomic orbital electron populations 1.23509 0.73855 1.05787 1.03539 1.86127 1.24956 1.25469 1.87712 1.18964 0.81159 0.87834 0.99038 1.21094 1.01806 0.89984 1.13316 1.21244 0.94096 0.97577 0.97143 1.20805 0.93939 0.95424 1.03985 1.20234 0.93996 0.84992 1.11426 1.23118 0.93839 0.92228 1.11532 1.69950 1.23756 1.08370 1.18737 1.24129 0.81797 0.94436 1.06824 1.17387 0.96351 0.80825 0.97564 1.20957 1.50294 0.93261 0.91169 0.94581 1.25775 0.94336 0.96664 1.01665 1.70058 1.49632 1.04485 1.32049 0.85449 0.78834 0.77676 0.79075 1.19071 1.19785 1.20014 1.42953 1.04821 1.09418 1.48869 0.87258 0.90091 0.89662 0.80068 0.80035 0.80185 0.77285 0.95754 0.96625 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.80 113.37 1.11 1.77 16 2 O -0.33 -13.26 8.77 -88.10 -0.77 -14.04 16 3 C 0.28 10.59 7.64 83.24 0.64 11.22 16 4 C -0.24 -6.29 8.98 22.20 0.20 -6.09 16 5 C -0.08 -1.72 10.06 22.31 0.22 -1.50 16 6 C -0.12 -3.12 10.11 22.42 0.23 -2.89 16 7 C 0.00 0.00 6.80 38.77 0.26 0.26 16 8 C -0.06 -2.23 12.01 84.38 1.01 -1.21 16 9 N -0.49 -25.08 11.19 -185.35 -2.07 -27.15 16 10 C 0.18 9.77 7.18 137.78 0.99 10.76 16 11 C 0.12 6.98 4.99 29.10 0.15 7.13 16 12 C -0.52 -31.84 9.09 25.60 0.23 -31.61 16 13 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 14 C 0.01 0.86 5.46 84.65 0.46 1.32 16 15 N -0.92 -56.52 13.29 21.45 0.28 -56.24 16 16 Si 0.97 45.90 29.54 68.60 2.03 47.93 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 N -0.38 -17.16 2.97 -448.23 -1.33 -18.49 16 21 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 22 H 0.08 1.55 7.67 -2.39 -0.02 1.54 16 23 H 0.08 1.54 7.59 -2.38 -0.02 1.52 16 24 H 0.18 3.18 6.16 -2.91 -0.02 3.16 16 25 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 26 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 27 H 0.21 6.27 8.06 -2.91 -0.02 6.25 16 28 H 0.02 1.49 7.01 -2.39 -0.02 1.48 16 29 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -79.61 264.13 4.78 -74.82 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.15 Total: 4.00 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 5.50 Total: -10.83 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -3.12 Total: -101.88 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.77 Total: -14.04 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -79.61 4.78 -74.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260699846.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.092 kcal (2) G-P(sol) polarization free energy of solvation -79.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds