Wall clock time and date at job start Mon Mar 30 2020 03:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35765 * 117.00219 * 2 1 4 4 C 1.36262 * 120.27961 * 359.97438 * 3 2 1 5 5 C 1.39535 * 121.64847 * 179.97438 * 4 3 2 6 6 C 1.35683 * 121.88516 * 359.97438 * 5 4 3 7 7 C 1.41211 * 119.70497 * 0.02562 * 6 5 4 8 8 N 1.32050 * 134.65821 * 179.97438 * 7 6 5 9 9 N 1.39959 * 108.93869 * 180.02562 * 8 7 6 10 10 C 1.46506 * 125.03244 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46928 * 305.02546 * 10 9 8 12 12 H 1.08003 * 119.99963 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99865 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00518 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99987 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46948 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47174 * 120.00320 * 15 13 11 18 18 H 1.48497 * 109.47378 * 240.00235 * 15 13 11 19 19 C 1.33970 * 109.94215 * 0.26298 * 9 8 7 20 20 C 1.38131 * 107.91558 * 359.58105 * 19 9 8 21 21 H 1.09003 * 109.47707 * 299.99931 * 1 2 3 22 22 H 1.09005 * 109.47345 * 60.00019 * 1 2 3 23 23 H 1.09005 * 109.47295 * 180.02562 * 1 2 3 24 24 H 1.07996 * 119.17332 * 0.02562 * 4 3 2 25 25 H 1.08007 * 119.05239 * 180.02562 * 5 4 3 26 26 H 1.08001 * 120.14877 * 179.97438 * 6 5 4 27 27 H 1.09004 * 109.47073 * 65.02374 * 10 9 8 28 28 H 1.09000 * 109.47212 * 185.02457 * 10 9 8 29 29 H 0.96992 * 120.00316 * 179.97438 * 14 13 11 30 30 H 1.07998 * 126.04814 * 179.73132 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.3088 2.3561 -0.0005 5 6 1.9125 3.6141 0.0000 6 6 3.2612 3.7619 0.0016 7 6 4.0904 2.6188 0.0022 8 7 5.3957 2.4190 0.0032 9 7 5.6444 1.0417 0.0027 10 6 6.9744 0.4273 0.0041 11 6 7.7739 0.9576 -1.1581 12 1 7.3353 1.6803 -1.8303 13 6 9.0655 0.5209 -1.3627 14 7 9.5998 -0.3588 -0.5440 15 14 10.0563 1.1777 -2.8038 16 1 9.2332 2.1484 -3.5689 17 1 11.2769 1.8552 -2.2975 18 1 10.4466 0.0520 -3.6902 19 6 4.4863 0.3683 -0.0043 20 6 3.4583 1.2908 0.0009 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.2309 2.2893 -0.0005 25 1 1.2881 4.4954 0.0000 26 1 3.6987 4.7493 0.0015 27 1 7.4851 0.6684 0.9365 28 1 6.8751 -0.6544 -0.0866 29 1 10.5083 -0.6662 -0.6882 30 1 4.3759 -0.7060 -0.0104 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261113951.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:35 Heat of formation + Delta-G solvation = 52.511090 kcal Electronic energy + Delta-G solvation = -15336.722675 eV Core-core repulsion = 12713.024383 eV Total energy + Delta-G solvation = -2623.698292 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.72662 -38.95719 -36.03533 -33.46111 -31.37528 -30.75804 -28.01926 -27.89080 -26.74415 -23.97875 -21.54680 -21.37822 -20.08036 -17.21823 -16.96909 -16.43656 -15.97098 -15.61794 -15.07729 -14.67269 -14.35149 -14.14363 -12.96474 -12.63273 -12.50274 -12.47122 -12.02066 -11.59054 -11.37581 -11.08560 -10.95884 -10.81055 -10.62360 -10.33420 -9.88305 -9.61439 -9.20495 -8.71656 -7.90102 -6.94525 -6.33156 -4.38803 1.29596 2.28353 3.06408 3.19542 3.21988 3.27395 3.35424 3.55553 4.26083 4.30847 4.81436 5.04334 5.06084 5.17584 5.25287 5.33134 5.45824 5.63077 5.85102 5.93037 5.99922 6.26361 6.60736 6.70781 6.87171 6.89404 6.98499 7.32856 7.56815 7.65117 7.73741 7.79071 8.44126 8.69585 9.27643 10.76166 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.039858 B = 0.005959 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.322933 B = 4697.805341 C = 5076.952439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.210 3.790 4 C -0.283 4.283 5 C -0.057 4.057 6 C -0.134 4.134 7 C 0.108 3.892 8 N -0.294 5.294 9 N -0.272 5.272 10 C 0.243 3.757 11 C -0.532 4.532 12 H 0.072 0.928 13 C 0.064 3.936 14 N -0.893 5.893 15 Si 0.911 3.089 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.281 1.281 19 C 0.090 3.910 20 C -0.238 4.238 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.095 0.905 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.121 0.879 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.268 0.732 30 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.373 1.085 1.345 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.162 3.838 4 C -0.304 4.304 5 C -0.079 4.079 6 C -0.156 4.156 7 C -0.046 4.046 8 N -0.121 5.121 9 N -0.043 5.043 10 C 0.126 3.874 11 C -0.570 4.570 12 H 0.090 0.910 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.738 3.262 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.071 4.071 20 C -0.249 4.249 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.113 0.887 24 H 0.135 0.865 25 H 0.135 0.865 26 H 0.139 0.861 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -13.712 1.285 1.391 13.842 hybrid contribution -0.395 -0.106 -0.709 0.818 sum -14.107 1.179 0.682 14.172 Atomic orbital electron populations 1.22996 0.78862 1.03374 1.01340 1.86013 1.21026 1.27971 1.88086 1.18016 0.89294 0.83878 0.92570 1.20231 0.98954 0.92112 1.19102 1.20115 0.93846 0.96208 0.97754 1.19679 0.91997 0.95489 1.08393 1.20888 0.90840 0.93167 0.99711 1.77849 1.13102 0.92628 1.28508 1.49558 1.08213 1.03945 1.42625 1.20061 0.73516 0.93532 1.00255 1.21225 0.98319 1.26374 1.11063 0.90951 1.24940 0.97179 0.94666 0.97132 1.69917 1.15684 1.30448 1.37096 0.86219 0.79692 0.78863 0.81474 1.19418 1.20552 1.20662 1.22631 0.85543 0.98583 1.00311 1.18873 0.90682 0.93776 1.21594 0.92753 0.92724 0.88678 0.86490 0.86469 0.86078 0.92646 0.92067 0.92198 0.80325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.73 10.51 -19.01 -0.20 -4.93 16 3 C 0.21 3.55 6.71 -39.04 -0.26 3.29 16 4 C -0.28 -4.19 8.97 -39.81 -0.36 -4.55 16 5 C -0.06 -0.84 9.88 -40.01 -0.40 -1.23 16 6 C -0.13 -2.34 10.08 -39.37 -0.40 -2.74 16 7 C 0.11 2.28 7.49 -83.06 -0.62 1.66 16 8 N -0.29 -7.04 12.34 33.25 0.41 -6.63 16 9 N -0.27 -6.30 3.62 -62.03 -0.22 -6.52 16 10 C 0.24 6.06 6.20 -5.19 -0.03 6.03 16 11 C -0.53 -14.63 9.20 -34.44 -0.32 -14.95 16 12 H 0.07 2.08 7.81 -52.48 -0.41 1.67 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 15 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C 0.09 1.79 11.44 -16.66 -0.19 1.60 16 20 C -0.24 -4.72 6.28 -105.10 -0.66 -5.38 16 21 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 22 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.12 1.37 6.17 -52.49 -0.32 1.05 16 25 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 26 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 27 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 28 H 0.06 1.47 8.04 -51.93 -0.42 1.05 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.18 2.92 8.06 -52.49 -0.42 2.50 16 LS Contribution 268.24 15.07 4.04 4.04 Total: -1.00 -30.73 268.24 -5.79 -36.52 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -3.19 Total: -1.16 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.34 Total: -13.35 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.92 Total: -37.30 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.20 Total: -4.93 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.73 -5.79 -36.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261113951.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.029 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds