Wall clock time and date at job start Mon Mar 30 2020 03:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35765 * 117.00219 * 2 1 4 4 C 1.36262 * 120.27961 * 359.97438 * 3 2 1 5 5 C 1.39535 * 121.64847 * 179.97438 * 4 3 2 6 6 C 1.35683 * 121.88516 * 359.97438 * 5 4 3 7 7 C 1.41211 * 119.70497 * 0.02562 * 6 5 4 8 8 N 1.32050 * 134.65821 * 179.97438 * 7 6 5 9 9 N 1.39959 * 108.93869 * 180.02562 * 8 7 6 10 10 C 1.46506 * 125.03244 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46928 * 305.02546 * 10 9 8 12 12 H 1.08003 * 119.99963 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99865 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00518 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99987 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46948 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47174 * 120.00320 * 15 13 11 18 18 H 1.48497 * 109.47378 * 240.00235 * 15 13 11 19 19 C 1.33970 * 109.94215 * 0.26298 * 9 8 7 20 20 C 1.38131 * 107.91558 * 359.58105 * 19 9 8 21 21 H 1.09003 * 109.47707 * 299.99931 * 1 2 3 22 22 H 1.09005 * 109.47345 * 60.00019 * 1 2 3 23 23 H 1.09005 * 109.47295 * 180.02562 * 1 2 3 24 24 H 1.07996 * 119.17332 * 0.02562 * 4 3 2 25 25 H 1.08007 * 119.05239 * 180.02562 * 5 4 3 26 26 H 1.08001 * 120.14877 * 179.97438 * 6 5 4 27 27 H 1.09004 * 109.47073 * 65.02374 * 10 9 8 28 28 H 1.09000 * 109.47212 * 185.02457 * 10 9 8 29 29 H 0.96992 * 120.00316 * 179.97438 * 14 13 11 30 30 H 1.07998 * 126.04814 * 179.73132 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.3088 2.3561 -0.0005 5 6 1.9125 3.6141 0.0000 6 6 3.2612 3.7619 0.0016 7 6 4.0904 2.6188 0.0022 8 7 5.3957 2.4190 0.0032 9 7 5.6444 1.0417 0.0027 10 6 6.9744 0.4273 0.0041 11 6 7.7739 0.9576 -1.1581 12 1 7.3353 1.6803 -1.8303 13 6 9.0655 0.5209 -1.3627 14 7 9.5998 -0.3588 -0.5440 15 14 10.0563 1.1777 -2.8038 16 1 9.2332 2.1484 -3.5689 17 1 11.2769 1.8552 -2.2975 18 1 10.4466 0.0520 -3.6902 19 6 4.4863 0.3683 -0.0043 20 6 3.4583 1.2908 0.0009 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.2309 2.2893 -0.0005 25 1 1.2881 4.4954 0.0000 26 1 3.6987 4.7493 0.0015 27 1 7.4851 0.6684 0.9365 28 1 6.8751 -0.6544 -0.0866 29 1 10.5083 -0.6662 -0.6882 30 1 4.3759 -0.7060 -0.0104 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261113951.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:34 Heat of formation + Delta-G solvation = 32.872048 kcal Electronic energy + Delta-G solvation = -15337.574288 eV Core-core repulsion = 12713.024383 eV Total energy + Delta-G solvation = -2624.549905 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.20899 -40.15839 -37.37167 -35.42543 -33.07792 -32.18177 -29.47397 -29.33220 -27.93133 -25.75125 -23.13232 -22.78201 -21.47762 -18.92985 -18.36460 -18.12975 -17.36439 -16.68945 -16.66156 -16.01935 -15.91708 -15.72832 -14.41386 -14.23984 -14.01826 -13.96429 -13.32623 -13.07572 -12.80318 -12.63524 -12.58405 -12.36677 -12.03647 -11.93973 -11.60202 -11.30951 -10.77923 -10.65706 -9.44681 -8.40606 -8.32077 -6.54448 -0.09375 0.93475 1.35041 1.36346 1.48043 1.58152 1.68264 2.31317 2.42717 2.92416 2.95887 3.38726 3.84910 4.15103 4.27202 4.39569 4.49830 4.50656 4.59025 4.64043 4.74094 4.83364 4.86501 5.15213 5.36233 5.50204 5.58458 5.68956 5.71156 5.97554 6.03190 6.53899 6.54832 6.88825 7.15820 8.68622 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.039858 B = 0.005959 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.322933 B = 4697.805341 C = 5076.952439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.203 3.797 4 C -0.275 4.275 5 C -0.030 4.030 6 C -0.170 4.170 7 C 0.095 3.905 8 N -0.352 5.352 9 N -0.298 5.298 10 C 0.258 3.742 11 C -0.551 4.551 12 H 0.051 0.949 13 C 0.022 3.978 14 N -0.918 5.918 15 Si 0.974 3.026 16 H -0.276 1.276 17 H -0.272 1.272 18 H -0.266 1.266 19 C 0.090 3.910 20 C -0.256 4.256 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.119 0.881 24 H 0.158 0.842 25 H 0.163 0.837 26 H 0.130 0.870 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.275 0.725 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.015 1.336 0.764 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.154 3.846 4 C -0.295 4.295 5 C -0.052 4.052 6 C -0.191 4.191 7 C -0.058 4.058 8 N -0.180 5.180 9 N -0.070 5.070 10 C 0.140 3.860 11 C -0.589 4.589 12 H 0.069 0.931 13 C -0.179 4.179 14 N -0.556 5.556 15 Si 0.798 3.202 16 H -0.201 1.201 17 H -0.197 1.197 18 H -0.191 1.191 19 C -0.069 4.069 20 C -0.266 4.266 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.137 0.863 24 H 0.175 0.825 25 H 0.181 0.819 26 H 0.148 0.852 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -16.384 1.525 0.819 16.476 hybrid contribution 0.138 -0.190 -0.489 0.542 sum -16.247 1.335 0.330 16.305 Atomic orbital electron populations 1.23400 0.75939 1.05598 1.02692 1.85992 1.23938 1.27018 1.87706 1.18073 0.88302 0.85539 0.92654 1.20748 1.00942 0.91183 1.16663 1.20670 0.92999 0.98016 0.93497 1.19992 0.93053 0.94929 1.11164 1.21489 0.90400 0.95138 0.98814 1.77713 1.15282 0.93281 1.31750 1.49254 1.08134 1.04160 1.45429 1.19632 0.74581 0.93596 0.98235 1.21338 0.99340 1.26462 1.11797 0.93059 1.25725 0.97875 0.94716 0.99570 1.69983 1.16262 1.31045 1.38328 0.85264 0.78082 0.78454 0.78415 1.20114 1.19671 1.19114 1.23190 0.84769 0.99993 0.98932 1.19226 0.92425 0.93083 1.21891 0.91200 0.91337 0.86310 0.82457 0.81939 0.85179 0.95066 0.91625 0.91604 0.77565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -9.00 10.51 -90.92 -0.96 -9.95 16 3 C 0.20 6.39 6.71 22.62 0.15 6.54 16 4 C -0.28 -7.00 8.97 22.12 0.20 -6.80 16 5 C -0.03 -0.77 9.88 21.99 0.22 -0.55 16 6 C -0.17 -5.77 10.08 22.41 0.23 -5.55 16 7 C 0.09 4.10 7.49 42.16 0.32 4.41 16 8 N -0.35 -17.81 12.34 -48.71 -0.60 -18.41 16 9 N -0.30 -14.52 3.62 -350.17 -1.27 -15.78 16 10 C 0.26 13.55 6.20 85.63 0.53 14.08 16 11 C -0.55 -31.66 9.20 25.60 0.24 -31.42 16 12 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 13 C 0.02 1.23 5.46 84.65 0.46 1.69 16 14 N -0.92 -51.97 13.29 21.45 0.28 -51.68 16 15 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 C 0.09 3.69 11.44 84.34 0.96 4.65 16 20 C -0.26 -10.10 6.28 -20.17 -0.13 -10.22 16 21 H 0.07 0.87 7.65 -2.39 -0.02 0.85 16 22 H 0.07 0.88 7.65 -2.38 -0.02 0.86 16 23 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.16 2.73 6.17 -2.91 -0.02 2.71 16 25 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 26 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 27 H 0.03 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.07 3.31 8.04 -2.39 -0.02 3.29 16 29 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.21 6.80 8.06 -2.91 -0.02 6.77 16 Total: -1.00 -69.32 268.24 4.92 -64.40 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.14 Total: 7.16 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 4.29 Total: -21.79 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -1.58 Total: -85.88 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.96 Total: -9.95 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.32 4.92 -64.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261113951.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.268 kcal (2) G-P(sol) polarization free energy of solvation -69.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds