Wall clock time and date at job start Mon Mar 30 2020 02:58:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86800 * 120.00017 * 2 1
4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1
5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1
6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1
7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1
9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1
10 10 H 1.09001 * 110.85550 * 56.20405 * 9 7 2
11 11 C 1.54625 * 110.96618 * 292.37954 * 9 7 2
12 12 C 1.51280 * 104.19499 * 217.08025 * 11 9 7
13 13 O 1.21278 * 124.94380 * 196.28901 * 12 11 9
14 14 N 1.34416 * 110.11699 * 16.25254 * 12 11 9
15 15 C 1.39401 * 124.35372 * 180.38611 * 14 12 11
16 16 C 1.39040 * 119.69844 * 184.75663 * 15 14 12
17 17 C 1.38368 * 119.10253 * 179.73421 * 16 15 14
18 18 C 1.38835 * 118.49051 * 0.52283 * 17 16 15
19 19 C 1.38081 * 119.31355 * 359.73566 * 18 17 16
20 20 N 1.31930 * 120.84694 * 359.97438 * 19 18 17
21 21 C 1.46768 * 111.30049 * 0.41010 * 14 12 11
22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3
23 23 H 1.09000 * 110.48874 * 335.75777 * 11 9 7
24 24 H 1.09008 * 110.48883 * 98.40272 * 11 9 7
25 25 H 1.08003 * 120.45116 * 359.96928 * 16 15 14
26 26 H 1.07994 * 120.75297 * 180.23945 * 17 16 15
27 27 H 1.08000 * 120.34284 * 179.75297 * 18 17 16
28 28 H 1.07994 * 119.57434 * 180.02562 * 19 18 17
29 29 H 1.09004 * 110.24901 * 223.98596 * 21 14 12
30 30 H 1.08995 * 110.25175 * 101.98053 * 21 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 1.2842 2.7465 -0.0006
5 1 3.1029 1.6965 1.2125
6 1 3.1029 1.6964 -1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2511 -2.4992 0.0005
10 1 0.5667 -2.5522 -0.8462
11 6 0.4979 -2.7032 1.3354
12 6 0.6171 -4.1869 1.6057
13 8 -0.0634 -4.8059 2.3960
14 7 1.5865 -4.7195 0.8418
15 6 1.9413 -6.0676 0.8477
16 6 3.0255 -6.4979 0.0911
17 6 3.3702 -7.8378 0.1103
18 6 2.6086 -8.7065 0.8803
19 6 1.5414 -8.2109 1.6029
20 7 1.2399 -6.9270 1.5697
21 6 2.2240 -3.6991 0.0012
22 1 -0.4850 -0.8401 -0.0004
23 1 0.9724 -2.1309 2.1326
24 1 -0.5488 -2.4175 1.2304
25 1 3.5933 -5.7951 -0.5007
26 1 4.2097 -8.2003 -0.4642
27 1 2.8485 -9.7590 0.9139
28 1 0.9464 -8.8828 2.2035
29 1 2.3586 -4.0760 -1.0127
30 1 3.1840 -3.4061 0.4261
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261248954.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:44
Heat of formation + Delta-G solvation = 3.793000 kcal
Electronic energy + Delta-G solvation = -15714.082345 eV
Core-core repulsion = 13088.271478 eV
Total energy + Delta-G solvation = -2625.810867 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 232.095 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-40.68697 -39.00780 -36.06655 -33.99578 -32.37264 -31.46891 -28.97167 -27.22563
-24.78257 -23.52465 -22.92786 -20.56090 -19.58651 -17.50738 -16.97842 -16.31833
-15.76237 -15.54804 -14.71492 -14.25254 -13.88134 -13.75681 -13.33396 -13.09958
-12.99373 -12.43706 -12.01882 -11.80160 -11.58046 -10.89898 -10.50026 -10.21582
-10.13884 -9.96451 -9.72487 -9.65606 -9.04687 -8.68539 -8.49411 -7.86455
-6.54258 -4.30783 1.21722 1.40326 3.06736 3.17393 3.36370 3.37248
3.56158 4.07782 4.38951 4.58340 4.84593 5.10249 5.15404 5.16265
5.26336 5.30646 5.59410 5.76635 5.79236 6.03780 6.10188 6.16777
6.26217 6.41566 6.58529 6.83766 7.06426 7.18355 7.36108 7.88560
8.19629 8.24555 8.64008 8.69046 9.42399 10.84074
Molecular weight = 232.10amu
Principal moments of inertia in cm(-1)
A = 0.049127 B = 0.006378 C = 0.005800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 569.819661 B = 4389.082627 C = 4826.639388
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.901 5.901
2 C 0.025 3.975
3 Si 1.070 2.930
4 H -0.281 1.281
5 H -0.286 1.286
6 H -0.286 1.286
7 C -0.601 4.601
8 H 0.058 0.942
9 C 0.032 3.968
10 H 0.043 0.957
11 C -0.147 4.147
12 C 0.513 3.487
13 O -0.500 6.500
14 N -0.558 5.558
15 C 0.383 3.617
16 C -0.212 4.212
17 C -0.047 4.047
18 C -0.222 4.222
19 C 0.134 3.866
20 N -0.497 5.497
21 C 0.111 3.889
22 H 0.272 0.728
23 H 0.103 0.897
24 H 0.090 0.910
25 H 0.137 0.863
26 H 0.134 0.866
27 H 0.131 0.869
28 H 0.155 0.845
29 H 0.070 0.930
30 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.967 -11.708 -1.199 13.677
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.181 4.181
3 Si 0.898 3.102
4 H -0.207 1.207
5 H -0.213 1.213
6 H -0.213 1.213
7 C -0.639 4.639
8 H 0.076 0.924
9 C 0.013 3.987
10 H 0.061 0.939
11 C -0.187 4.187
12 C 0.303 3.697
13 O -0.372 6.372
14 N -0.284 5.284
15 C 0.153 3.847
16 C -0.236 4.236
17 C -0.074 4.074
18 C -0.244 4.244
19 C -0.024 4.024
20 N -0.212 5.212
21 C -0.010 4.010
22 H 0.083 0.917
23 H 0.121 0.879
24 H 0.109 0.891
25 H 0.154 0.846
26 H 0.152 0.848
27 H 0.149 0.851
28 H 0.172 0.828
29 H 0.088 0.912
30 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 5.638 -10.002 -0.271 11.485
hybrid contribution 0.995 -2.090 -0.529 2.374
sum 6.632 -12.092 -0.800 13.815
Atomic orbital electron populations
1.70823 1.06899 1.31048 1.44761 1.25866 0.96426 1.02747 0.93025
0.83509 0.74921 0.75128 0.76670 1.20669 1.21274 1.21275 1.21772
0.94228 0.90300 1.57557 0.92366 1.19839 0.93329 0.92933 0.92613
0.93902 1.22787 1.03659 0.89330 1.02949 1.21909 0.77838 0.91299
0.78647 1.90667 1.44232 1.68208 1.34050 1.46339 1.35984 1.04657
1.41390 1.18477 0.90024 0.84969 0.91244 1.21562 0.99764 0.97483
1.04767 1.21328 0.97860 0.92346 0.95827 1.21941 0.99271 1.00959
1.02180 1.22571 0.94144 0.90508 0.95205 1.67420 1.29788 1.03294
1.20699 1.22567 0.98178 0.87219 0.93051 0.91666 0.87898 0.89139
0.84554 0.84797 0.85085 0.82773 0.91158 0.90457
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.10 13.51 55.43 0.75 -24.35 16
2 C 0.03 0.66 5.37 -17.82 -0.10 0.57 16
3 Si 1.07 23.14 29.90 -169.99 -5.08 18.06 16
4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
5 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16
6 H -0.29 -5.90 7.11 56.52 0.40 -5.50 16
7 C -0.60 -14.96 8.39 -34.44 -0.29 -15.25 16
8 H 0.06 1.41 7.60 -52.48 -0.40 1.01 16
9 C 0.03 0.72 2.61 -90.14 -0.23 0.49 16
10 H 0.04 1.02 7.89 -51.93 -0.41 0.61 16
11 C -0.15 -3.31 5.62 -26.74 -0.15 -3.46 16
12 C 0.51 11.63 7.97 -10.86 -0.09 11.55 16
13 O -0.50 -12.53 16.51 5.56 0.09 -12.44 16
14 N -0.56 -11.28 3.12 -114.19 -0.36 -11.63 16
15 C 0.38 7.12 7.44 -154.71 -1.15 5.97 16
16 C -0.21 -3.10 9.43 -39.24 -0.37 -3.47 16
17 C -0.05 -0.56 10.17 -39.31 -0.40 -0.96 16
18 C -0.22 -2.57 10.11 -39.42 -0.40 -2.97 16
19 C 0.13 1.93 11.18 -17.57 -0.20 1.74 16
20 N -0.50 -9.54 8.74 -12.37 -0.11 -9.65 16
21 C 0.11 2.10 5.81 -3.12 -0.02 2.09 16
22 H 0.27 7.49 5.84 -40.82 -0.24 7.25 16
23 H 0.10 2.39 7.89 -51.93 -0.41 1.98 16
24 H 0.09 2.09 7.18 -51.92 -0.37 1.71 16
25 H 0.14 1.75 6.97 -52.48 -0.37 1.39 16
26 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16
27 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16
28 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16
29 H 0.07 1.17 7.63 -51.93 -0.40 0.78 16
30 H 0.08 1.41 7.74 -51.93 -0.40 1.01 16
LS Contribution 260.10 15.07 3.92 3.92
Total: -1.00 -31.02 260.10 -7.24 -38.25
By element:
Atomic # 1 Polarization: 4.61 SS G_CDS: -3.06 Total: 1.56 kcal
Atomic # 6 Polarization: -0.32 SS G_CDS: -3.39 Total: -3.71 kcal
Atomic # 7 Polarization: -45.91 SS G_CDS: 0.28 Total: -45.63 kcal
Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal
Atomic # 14 Polarization: 23.14 SS G_CDS: -5.08 Total: 18.06 kcal
Total LS contribution 3.92 Total: 3.92 kcal
Total: -31.02 -7.24 -38.25 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261248954.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.046 kcal
(2) G-P(sol) polarization free energy of solvation -31.016 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.029 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.793 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds