Wall clock time and date at job start Mon Mar 30 2020 02:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.85550 * 56.20405 * 9 7 2 11 11 C 1.54625 * 110.96618 * 292.37954 * 9 7 2 12 12 C 1.51280 * 104.19499 * 217.08025 * 11 9 7 13 13 O 1.21278 * 124.94380 * 196.28901 * 12 11 9 14 14 N 1.34416 * 110.11699 * 16.25254 * 12 11 9 15 15 C 1.39401 * 124.35372 * 180.38611 * 14 12 11 16 16 C 1.39040 * 119.69844 * 184.75663 * 15 14 12 17 17 C 1.38368 * 119.10253 * 179.73421 * 16 15 14 18 18 C 1.38835 * 118.49051 * 0.52283 * 17 16 15 19 19 C 1.38081 * 119.31355 * 359.73566 * 18 17 16 20 20 N 1.31930 * 120.84694 * 359.97438 * 19 18 17 21 21 C 1.46768 * 111.30049 * 0.41010 * 14 12 11 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.09000 * 110.48874 * 335.75777 * 11 9 7 24 24 H 1.09008 * 110.48883 * 98.40272 * 11 9 7 25 25 H 1.08003 * 120.45116 * 359.96928 * 16 15 14 26 26 H 1.07994 * 120.75297 * 180.23945 * 17 16 15 27 27 H 1.08000 * 120.34284 * 179.75297 * 18 17 16 28 28 H 1.07994 * 119.57434 * 180.02562 * 19 18 17 29 29 H 1.09004 * 110.24901 * 223.98596 * 21 14 12 30 30 H 1.08995 * 110.25175 * 101.98053 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5667 -2.5522 -0.8462 11 6 0.4979 -2.7032 1.3354 12 6 0.6171 -4.1869 1.6057 13 8 -0.0634 -4.8059 2.3960 14 7 1.5865 -4.7195 0.8418 15 6 1.9413 -6.0676 0.8477 16 6 3.0255 -6.4979 0.0911 17 6 3.3702 -7.8378 0.1103 18 6 2.6086 -8.7065 0.8803 19 6 1.5414 -8.2109 1.6029 20 7 1.2399 -6.9270 1.5697 21 6 2.2240 -3.6991 0.0012 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9724 -2.1309 2.1326 24 1 -0.5488 -2.4175 1.2304 25 1 3.5933 -5.7951 -0.5007 26 1 4.2097 -8.2003 -0.4642 27 1 2.8485 -9.7590 0.9139 28 1 0.9464 -8.8828 2.2035 29 1 2.3586 -4.0760 -1.0127 30 1 3.1840 -3.4061 0.4261 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261248954.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:44 Heat of formation + Delta-G solvation = 3.793000 kcal Electronic energy + Delta-G solvation = -15714.082345 eV Core-core repulsion = 13088.271478 eV Total energy + Delta-G solvation = -2625.810867 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.68697 -39.00780 -36.06655 -33.99578 -32.37264 -31.46891 -28.97167 -27.22563 -24.78257 -23.52465 -22.92786 -20.56090 -19.58651 -17.50738 -16.97842 -16.31833 -15.76237 -15.54804 -14.71492 -14.25254 -13.88134 -13.75681 -13.33396 -13.09958 -12.99373 -12.43706 -12.01882 -11.80160 -11.58046 -10.89898 -10.50026 -10.21582 -10.13884 -9.96451 -9.72487 -9.65606 -9.04687 -8.68539 -8.49411 -7.86455 -6.54258 -4.30783 1.21722 1.40326 3.06736 3.17393 3.36370 3.37248 3.56158 4.07782 4.38951 4.58340 4.84593 5.10249 5.15404 5.16265 5.26336 5.30646 5.59410 5.76635 5.79236 6.03780 6.10188 6.16777 6.26217 6.41566 6.58529 6.83766 7.06426 7.18355 7.36108 7.88560 8.19629 8.24555 8.64008 8.69046 9.42399 10.84074 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.049127 B = 0.006378 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.819661 B = 4389.082627 C = 4826.639388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.025 3.975 3 Si 1.070 2.930 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.601 4.601 8 H 0.058 0.942 9 C 0.032 3.968 10 H 0.043 0.957 11 C -0.147 4.147 12 C 0.513 3.487 13 O -0.500 6.500 14 N -0.558 5.558 15 C 0.383 3.617 16 C -0.212 4.212 17 C -0.047 4.047 18 C -0.222 4.222 19 C 0.134 3.866 20 N -0.497 5.497 21 C 0.111 3.889 22 H 0.272 0.728 23 H 0.103 0.897 24 H 0.090 0.910 25 H 0.137 0.863 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.155 0.845 29 H 0.070 0.930 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -11.708 -1.199 13.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.181 4.181 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.639 4.639 8 H 0.076 0.924 9 C 0.013 3.987 10 H 0.061 0.939 11 C -0.187 4.187 12 C 0.303 3.697 13 O -0.372 6.372 14 N -0.284 5.284 15 C 0.153 3.847 16 C -0.236 4.236 17 C -0.074 4.074 18 C -0.244 4.244 19 C -0.024 4.024 20 N -0.212 5.212 21 C -0.010 4.010 22 H 0.083 0.917 23 H 0.121 0.879 24 H 0.109 0.891 25 H 0.154 0.846 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.172 0.828 29 H 0.088 0.912 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.638 -10.002 -0.271 11.485 hybrid contribution 0.995 -2.090 -0.529 2.374 sum 6.632 -12.092 -0.800 13.815 Atomic orbital electron populations 1.70823 1.06899 1.31048 1.44761 1.25866 0.96426 1.02747 0.93025 0.83509 0.74921 0.75128 0.76670 1.20669 1.21274 1.21275 1.21772 0.94228 0.90300 1.57557 0.92366 1.19839 0.93329 0.92933 0.92613 0.93902 1.22787 1.03659 0.89330 1.02949 1.21909 0.77838 0.91299 0.78647 1.90667 1.44232 1.68208 1.34050 1.46339 1.35984 1.04657 1.41390 1.18477 0.90024 0.84969 0.91244 1.21562 0.99764 0.97483 1.04767 1.21328 0.97860 0.92346 0.95827 1.21941 0.99271 1.00959 1.02180 1.22571 0.94144 0.90508 0.95205 1.67420 1.29788 1.03294 1.20699 1.22567 0.98178 0.87219 0.93051 0.91666 0.87898 0.89139 0.84554 0.84797 0.85085 0.82773 0.91158 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 13.51 55.43 0.75 -24.35 16 2 C 0.03 0.66 5.37 -17.82 -0.10 0.57 16 3 Si 1.07 23.14 29.90 -169.99 -5.08 18.06 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.29 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.60 -14.96 8.39 -34.44 -0.29 -15.25 16 8 H 0.06 1.41 7.60 -52.48 -0.40 1.01 16 9 C 0.03 0.72 2.61 -90.14 -0.23 0.49 16 10 H 0.04 1.02 7.89 -51.93 -0.41 0.61 16 11 C -0.15 -3.31 5.62 -26.74 -0.15 -3.46 16 12 C 0.51 11.63 7.97 -10.86 -0.09 11.55 16 13 O -0.50 -12.53 16.51 5.56 0.09 -12.44 16 14 N -0.56 -11.28 3.12 -114.19 -0.36 -11.63 16 15 C 0.38 7.12 7.44 -154.71 -1.15 5.97 16 16 C -0.21 -3.10 9.43 -39.24 -0.37 -3.47 16 17 C -0.05 -0.56 10.17 -39.31 -0.40 -0.96 16 18 C -0.22 -2.57 10.11 -39.42 -0.40 -2.97 16 19 C 0.13 1.93 11.18 -17.57 -0.20 1.74 16 20 N -0.50 -9.54 8.74 -12.37 -0.11 -9.65 16 21 C 0.11 2.10 5.81 -3.12 -0.02 2.09 16 22 H 0.27 7.49 5.84 -40.82 -0.24 7.25 16 23 H 0.10 2.39 7.89 -51.93 -0.41 1.98 16 24 H 0.09 2.09 7.18 -51.92 -0.37 1.71 16 25 H 0.14 1.75 6.97 -52.48 -0.37 1.39 16 26 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.07 1.17 7.63 -51.93 -0.40 0.78 16 30 H 0.08 1.41 7.74 -51.93 -0.40 1.01 16 LS Contribution 260.10 15.07 3.92 3.92 Total: -1.00 -31.02 260.10 -7.24 -38.25 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -3.06 Total: 1.56 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -3.39 Total: -3.71 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.28 Total: -45.63 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.08 Total: 18.06 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.02 -7.24 -38.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248954.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.046 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds