Wall clock time and date at job start Mon Mar 30 2020 02:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.85550 * 56.20405 * 9 7 2 11 11 C 1.54625 * 110.96618 * 292.37954 * 9 7 2 12 12 C 1.51280 * 104.19499 * 217.08025 * 11 9 7 13 13 O 1.21278 * 124.94380 * 196.28901 * 12 11 9 14 14 N 1.34416 * 110.11699 * 16.25254 * 12 11 9 15 15 C 1.39401 * 124.35372 * 180.38611 * 14 12 11 16 16 C 1.39040 * 119.69844 * 184.75663 * 15 14 12 17 17 C 1.38368 * 119.10253 * 179.73421 * 16 15 14 18 18 C 1.38835 * 118.49051 * 0.52283 * 17 16 15 19 19 C 1.38081 * 119.31355 * 359.73566 * 18 17 16 20 20 N 1.31930 * 120.84694 * 359.97438 * 19 18 17 21 21 C 1.46768 * 111.30049 * 0.41010 * 14 12 11 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.09000 * 110.48874 * 335.75777 * 11 9 7 24 24 H 1.09008 * 110.48883 * 98.40272 * 11 9 7 25 25 H 1.08003 * 120.45116 * 359.96928 * 16 15 14 26 26 H 1.07994 * 120.75297 * 180.23945 * 17 16 15 27 27 H 1.08000 * 120.34284 * 179.75297 * 18 17 16 28 28 H 1.07994 * 119.57434 * 180.02562 * 19 18 17 29 29 H 1.09004 * 110.24901 * 223.98596 * 21 14 12 30 30 H 1.08995 * 110.25175 * 101.98053 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5667 -2.5522 -0.8462 11 6 0.4979 -2.7032 1.3354 12 6 0.6171 -4.1869 1.6057 13 8 -0.0634 -4.8059 2.3960 14 7 1.5865 -4.7195 0.8418 15 6 1.9413 -6.0676 0.8477 16 6 3.0255 -6.4979 0.0911 17 6 3.3702 -7.8378 0.1103 18 6 2.6086 -8.7065 0.8803 19 6 1.5414 -8.2109 1.6029 20 7 1.2399 -6.9270 1.5697 21 6 2.2240 -3.6991 0.0012 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9724 -2.1309 2.1326 24 1 -0.5488 -2.4175 1.2304 25 1 3.5933 -5.7951 -0.5007 26 1 4.2097 -8.2003 -0.4642 27 1 2.8485 -9.7590 0.9139 28 1 0.9464 -8.8828 2.2035 29 1 2.3586 -4.0760 -1.0127 30 1 3.1840 -3.4061 0.4261 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261248954.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:44 Heat of formation + Delta-G solvation = -15.095060 kcal Electronic energy + Delta-G solvation = -15714.901393 eV Core-core repulsion = 13088.271478 eV Total energy + Delta-G solvation = -2626.629915 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.12957 -40.38332 -37.83409 -35.71093 -33.54666 -33.02108 -30.39309 -28.94691 -26.55594 -24.74136 -24.28165 -22.25642 -21.04380 -19.20355 -18.61506 -17.73299 -17.16149 -16.76913 -16.09513 -15.76476 -15.58005 -15.24077 -14.92145 -14.79161 -14.02499 -13.95261 -13.70445 -13.56906 -12.83793 -12.61343 -12.27202 -11.92607 -11.82222 -11.40602 -11.29227 -10.84175 -10.64333 -10.52347 -10.20289 -9.18465 -8.59729 -6.36299 0.05513 0.35950 1.50463 1.61781 1.65925 1.69117 1.86929 2.61312 2.90859 3.19100 3.28976 3.62903 3.85949 3.95039 4.09990 4.14853 4.22876 4.30034 4.44785 4.59795 4.64403 4.77798 4.99345 5.04041 5.23961 5.29959 5.43121 5.71433 5.85766 5.99104 6.19395 6.58605 6.92070 7.15396 7.45210 8.79330 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.049127 B = 0.006378 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.819661 B = 4389.082627 C = 4826.639388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.024 4.024 3 Si 1.115 2.885 4 H -0.292 1.292 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.601 4.601 8 H 0.068 0.932 9 C 0.026 3.974 10 H 0.025 0.975 11 C -0.137 4.137 12 C 0.510 3.490 13 O -0.537 6.537 14 N -0.558 5.558 15 C 0.336 3.664 16 C -0.207 4.207 17 C -0.040 4.040 18 C -0.194 4.194 19 C 0.111 3.889 20 N -0.548 5.548 21 C 0.124 3.876 22 H 0.261 0.739 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.154 0.846 26 H 0.181 0.819 27 H 0.176 0.824 28 H 0.175 0.825 29 H 0.097 0.903 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.873 -13.657 -2.242 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.224 4.224 3 Si 0.937 3.063 4 H -0.218 1.218 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.639 4.639 8 H 0.086 0.914 9 C 0.007 3.993 10 H 0.043 0.957 11 C -0.178 4.178 12 C 0.300 3.700 13 O -0.412 6.412 14 N -0.283 5.283 15 C 0.108 3.892 16 C -0.230 4.230 17 C -0.066 4.066 18 C -0.215 4.215 19 C -0.046 4.046 20 N -0.263 5.263 21 C 0.003 3.997 22 H 0.071 0.929 23 H 0.109 0.891 24 H 0.092 0.908 25 H 0.172 0.828 26 H 0.198 0.802 27 H 0.193 0.807 28 H 0.192 0.808 29 H 0.115 0.885 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.594 -12.011 -1.340 14.829 hybrid contribution 0.146 -1.700 -0.222 1.721 sum 8.740 -13.711 -1.561 16.335 Atomic orbital electron populations 1.70927 1.08097 1.30482 1.47504 1.27189 0.96408 1.06356 0.92417 0.82937 0.74064 0.71294 0.78009 1.21833 1.19710 1.19102 1.22120 0.94831 0.91046 1.55918 0.91413 1.19771 0.93822 0.94145 0.91606 0.95732 1.22576 1.02589 0.89935 1.02717 1.21760 0.78394 0.91031 0.78792 1.90626 1.45958 1.68732 1.35886 1.46194 1.35240 1.06067 1.40802 1.18771 0.92387 0.83968 0.94041 1.21847 0.98201 0.99350 1.03604 1.21913 0.98551 0.90886 0.95254 1.22449 0.96798 1.03080 0.99171 1.23088 0.95820 0.89284 0.96431 1.67261 1.31580 1.05427 1.22055 1.22440 0.97071 0.85648 0.94533 0.92883 0.89069 0.90795 0.82821 0.80188 0.80653 0.80848 0.88458 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.56 13.51 21.45 0.29 -53.27 16 2 C -0.02 -1.26 5.37 84.65 0.45 -0.81 16 3 Si 1.11 46.20 29.90 68.60 2.05 48.25 16 4 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.60 -29.90 8.39 25.60 0.21 -29.69 16 8 H 0.07 3.18 7.60 -2.91 -0.02 3.16 16 9 C 0.03 1.18 2.61 -10.48 -0.03 1.15 16 10 H 0.02 1.21 7.89 -2.39 -0.02 1.20 16 11 C -0.14 -6.52 5.62 30.59 0.17 -6.34 16 12 C 0.51 24.10 7.97 87.90 0.70 24.80 16 13 O -0.54 -28.26 16.51 -3.02 -0.05 -28.31 16 14 N -0.56 -22.61 3.12 -633.77 -1.98 -24.59 16 15 C 0.34 12.21 7.44 132.92 0.99 13.20 16 16 C -0.21 -5.38 9.43 22.49 0.21 -5.17 16 17 C -0.04 -0.74 10.17 22.44 0.23 -0.51 16 18 C -0.19 -3.59 10.11 22.38 0.23 -3.36 16 19 C 0.11 2.96 11.18 84.64 0.95 3.91 16 20 N -0.55 -20.88 8.74 -193.04 -1.69 -22.57 16 21 C 0.12 4.58 5.81 86.83 0.50 5.08 16 22 H 0.26 15.07 5.84 -92.71 -0.54 14.53 16 23 H 0.09 4.46 7.89 -2.39 -0.02 4.44 16 24 H 0.07 3.68 7.18 -2.38 -0.02 3.66 16 25 H 0.15 3.35 6.97 -2.91 -0.02 3.33 16 26 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 27 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 28 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.10 3.05 7.63 -2.39 -0.02 3.03 16 30 H 0.09 3.07 7.74 -2.39 -0.02 3.05 16 Total: -1.00 -70.51 260.10 4.62 -65.89 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.38 Total: 12.34 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 4.62 Total: 2.27 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -3.38 Total: -100.43 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.05 Total: -28.31 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.05 Total: 48.25 kcal Total: -70.51 4.62 -65.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248954.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.792 kcal (2) G-P(sol) polarization free energy of solvation -70.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds