Wall clock time and date at job start Mon Mar 30 2020 02:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00072 * 2 1 4 4 H 1.48501 * 109.46830 * 274.91558 * 3 2 1 5 5 H 1.48502 * 109.47095 * 34.91038 * 3 2 1 6 6 H 1.48498 * 109.47461 * 154.91664 * 3 2 1 7 7 C 1.37876 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00216 * 186.77948 * 7 2 1 9 9 C 1.50702 * 119.99660 * 6.77802 * 7 2 1 10 10 H 1.08999 * 110.28926 * 306.95041 * 9 7 2 11 11 N 1.46772 * 110.24367 * 68.92481 * 9 7 2 12 12 C 1.34417 * 111.29955 * 136.01417 * 11 9 7 13 13 O 1.21283 * 124.94177 * 179.55792 * 12 11 9 14 14 C 1.51282 * 110.11799 * 359.59349 * 12 11 9 15 15 C 1.54484 * 110.24674 * 184.97208 * 9 7 2 16 16 H 1.09001 * 110.96707 * 333.70613 * 15 9 7 17 17 C 1.50690 * 110.96728 * 97.46820 * 15 9 7 18 18 C 1.38684 * 120.41632 * 233.55347 * 17 15 9 19 19 C 1.38627 * 118.41518 * 179.78317 * 18 17 15 20 20 C 1.38227 * 119.16625 * 0.51621 * 19 18 17 21 21 N 1.31853 * 120.76195 * 359.72178 * 20 19 18 22 22 C 1.31885 * 121.72667 * 0.02562 * 21 20 19 23 23 H 0.96998 * 120.00137 * 359.97438 * 1 2 3 24 24 H 0.96999 * 124.34935 * 316.03568 * 11 9 7 25 25 H 1.08996 * 110.48925 * 225.06811 * 14 12 11 26 26 H 1.09004 * 110.48804 * 102.41844 * 14 12 11 27 27 H 1.07996 * 120.78551 * 0.02562 * 18 17 15 28 28 H 1.08004 * 120.41149 * 180.22213 * 19 18 17 29 29 H 1.07992 * 119.61791 * 179.74993 * 20 19 18 30 30 H 1.07999 * 119.61793 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3927 2.1064 -1.3950 5 1 1.5023 2.6205 0.8013 6 1 3.5948 1.4125 0.5935 7 6 2.0046 -1.1940 -0.0005 8 1 3.0789 -1.1973 0.1099 9 6 1.2590 -2.4945 -0.1552 10 1 0.4581 -2.5609 0.5812 11 7 0.7117 -2.6079 -1.5123 12 6 0.9107 -3.8373 -2.0179 13 8 0.5516 -4.2029 -3.1171 14 6 1.6471 -4.6990 -1.0160 15 6 2.2278 -3.6878 -0.0004 16 1 3.2443 -3.4027 -0.2715 17 6 2.1807 -4.2424 1.3999 18 6 3.3460 -4.3848 2.1383 19 6 3.2542 -4.8951 3.4239 20 6 2.0145 -5.2527 3.9198 21 7 0.9278 -5.1080 3.1872 22 6 0.9768 -4.6214 1.9624 23 1 -0.4850 0.8400 0.0004 24 1 0.2642 -1.8880 -1.9839 25 1 2.4492 -5.2519 -1.5049 26 1 0.9574 -5.3830 -0.5213 27 1 4.3017 -4.1011 1.7229 28 1 4.1409 -5.0162 4.0287 29 1 1.9351 -5.6548 4.9189 30 1 0.0653 -4.5179 1.3923 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261269018.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:24 Heat of formation + Delta-G solvation = -13.367698 kcal Electronic energy + Delta-G solvation = -15862.207655 eV Core-core repulsion = 13235.652644 eV Total energy + Delta-G solvation = -2626.555011 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.21214 -38.88403 -35.84680 -33.01638 -32.31288 -31.53362 -28.99268 -27.67821 -24.41654 -23.37706 -22.44635 -19.99821 -19.50503 -17.19138 -16.94041 -16.06586 -15.78206 -14.94424 -14.69634 -14.44601 -13.75564 -13.62203 -12.93192 -12.74678 -12.66887 -12.53295 -12.26427 -12.05553 -11.17736 -11.11566 -10.79139 -10.64916 -10.19941 -9.85779 -9.40071 -9.16583 -9.08684 -8.78601 -8.45729 -7.77778 -6.36128 -4.47450 1.42344 1.60217 3.13799 3.23007 3.24426 3.50035 4.10947 4.18337 4.52879 4.70267 4.98055 5.06200 5.16912 5.27340 5.34838 5.42785 5.51905 5.72738 5.84800 5.99413 6.12076 6.29968 6.37028 6.40475 6.71394 7.01080 7.23824 7.58282 7.74158 8.00723 8.26698 8.28685 8.65363 9.23242 9.32348 10.70094 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.010324 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.376776 B = 2711.386348 C = 3665.879490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.074 3.926 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.258 3.742 10 H 0.056 0.944 11 N -0.693 5.693 12 C 0.501 3.499 13 O -0.581 6.581 14 C -0.148 4.148 15 C -0.058 4.058 16 H 0.093 0.907 17 C -0.093 4.093 18 C -0.072 4.072 19 C -0.175 4.175 20 C 0.080 3.920 21 N -0.485 5.485 22 C 0.105 3.895 23 H 0.268 0.732 24 H 0.407 0.593 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.149 0.851 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.824 -6.684 5.701 10.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.132 4.132 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.157 3.843 10 H 0.073 0.927 11 N -0.344 5.344 12 C 0.286 3.714 13 O -0.464 6.464 14 C -0.188 4.188 15 C -0.078 4.078 16 H 0.111 0.889 17 C -0.095 4.095 18 C -0.098 4.098 19 C -0.194 4.194 20 C -0.077 4.077 21 N -0.194 5.194 22 C -0.052 4.052 23 H 0.078 0.922 24 H 0.245 0.755 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.150 0.850 28 H 0.147 0.853 29 H 0.166 0.834 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.717 -7.066 5.607 10.179 hybrid contribution 1.131 1.658 -0.414 2.049 sum 5.847 -5.408 5.194 9.509 Atomic orbital electron populations 1.69934 1.06045 1.27730 1.47805 1.25104 0.94931 0.99793 0.93392 0.86487 0.80021 0.82752 0.78295 1.20363 1.20968 1.19559 1.21264 0.94029 0.90032 1.51823 0.91528 1.19480 0.91736 0.92077 0.81055 0.92667 1.47227 1.56156 1.11824 1.19157 1.20829 0.79742 0.84211 0.86637 1.90635 1.56334 1.77336 1.22058 1.22434 1.00941 0.98284 0.97156 1.21242 1.01966 0.95470 0.89121 0.88917 1.20684 0.94067 0.97675 0.97071 1.21483 0.98551 0.95947 0.93817 1.22045 0.99215 1.01568 0.96619 1.22630 0.88253 0.97485 0.99326 1.67666 1.32069 1.13229 1.06395 1.22635 0.97530 0.93908 0.91132 0.92179 0.75460 0.89261 0.88894 0.85012 0.85313 0.83412 0.82919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.97 13.27 55.43 0.74 -22.23 16 2 C 0.07 1.84 5.44 -17.82 -0.10 1.75 16 3 Si 0.90 19.65 29.54 -169.99 -5.02 14.63 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.53 -12.95 8.71 -34.44 -0.30 -13.25 16 8 H 0.07 1.59 7.58 -52.49 -0.40 1.19 16 9 C 0.26 5.66 2.70 -68.15 -0.18 5.48 16 10 H 0.06 1.33 6.69 -51.93 -0.35 0.98 16 11 N -0.69 -15.50 5.85 -53.87 -0.32 -15.82 16 12 C 0.50 10.76 8.43 -10.86 -0.09 10.67 16 13 O -0.58 -14.21 18.03 5.56 0.10 -14.11 16 14 C -0.15 -2.55 6.34 -26.74 -0.17 -2.72 16 15 C -0.06 -1.04 2.88 -90.14 -0.26 -1.30 16 16 H 0.09 1.61 7.62 -51.93 -0.40 1.22 16 17 C -0.09 -1.53 4.97 -104.48 -0.52 -2.05 16 18 C -0.07 -1.03 9.83 -39.27 -0.39 -1.41 16 19 C -0.17 -2.21 10.11 -39.44 -0.40 -2.61 16 20 C 0.08 1.10 11.18 -17.55 -0.20 0.90 16 21 N -0.49 -8.06 10.36 -13.25 -0.14 -8.20 16 22 C 0.10 1.79 9.23 -17.55 -0.16 1.62 16 23 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 24 H 0.41 9.60 8.96 -40.82 -0.37 9.24 16 25 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.09 1.47 7.09 -51.93 -0.37 1.11 16 27 H 0.13 1.61 8.04 -52.49 -0.42 1.19 16 28 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 29 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.15 2.59 7.36 -52.49 -0.39 2.20 16 LS Contribution 264.10 15.07 3.98 3.98 Total: -1.00 -28.79 264.10 -6.51 -35.30 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -3.09 Total: 9.37 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.76 Total: -2.92 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.28 Total: -46.25 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.10 Total: -14.11 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.79 -6.51 -35.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269018.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.928 kcal (2) G-P(sol) polarization free energy of solvation -28.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds