Wall clock time and date at job start Mon Mar 30 2020 02:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00072 * 2 1 4 4 H 1.48501 * 109.46830 * 274.91558 * 3 2 1 5 5 H 1.48502 * 109.47095 * 34.91038 * 3 2 1 6 6 H 1.48498 * 109.47461 * 154.91664 * 3 2 1 7 7 C 1.37876 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00216 * 186.77948 * 7 2 1 9 9 C 1.50702 * 119.99660 * 6.77802 * 7 2 1 10 10 H 1.08999 * 110.28926 * 306.95041 * 9 7 2 11 11 N 1.46772 * 110.24367 * 68.92481 * 9 7 2 12 12 C 1.34417 * 111.29955 * 136.01417 * 11 9 7 13 13 O 1.21283 * 124.94177 * 179.55792 * 12 11 9 14 14 C 1.51282 * 110.11799 * 359.59349 * 12 11 9 15 15 C 1.54484 * 110.24674 * 184.97208 * 9 7 2 16 16 H 1.09001 * 110.96707 * 333.70613 * 15 9 7 17 17 C 1.50690 * 110.96728 * 97.46820 * 15 9 7 18 18 C 1.38684 * 120.41632 * 233.55347 * 17 15 9 19 19 C 1.38627 * 118.41518 * 179.78317 * 18 17 15 20 20 C 1.38227 * 119.16625 * 0.51621 * 19 18 17 21 21 N 1.31853 * 120.76195 * 359.72178 * 20 19 18 22 22 C 1.31885 * 121.72667 * 0.02562 * 21 20 19 23 23 H 0.96998 * 120.00137 * 359.97438 * 1 2 3 24 24 H 0.96999 * 124.34935 * 316.03568 * 11 9 7 25 25 H 1.08996 * 110.48925 * 225.06811 * 14 12 11 26 26 H 1.09004 * 110.48804 * 102.41844 * 14 12 11 27 27 H 1.07996 * 120.78551 * 0.02562 * 18 17 15 28 28 H 1.08004 * 120.41149 * 180.22213 * 19 18 17 29 29 H 1.07992 * 119.61791 * 179.74993 * 20 19 18 30 30 H 1.07999 * 119.61793 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3927 2.1064 -1.3950 5 1 1.5023 2.6205 0.8013 6 1 3.5948 1.4125 0.5935 7 6 2.0046 -1.1940 -0.0005 8 1 3.0789 -1.1973 0.1099 9 6 1.2590 -2.4945 -0.1552 10 1 0.4581 -2.5609 0.5812 11 7 0.7117 -2.6079 -1.5123 12 6 0.9107 -3.8373 -2.0179 13 8 0.5516 -4.2029 -3.1171 14 6 1.6471 -4.6990 -1.0160 15 6 2.2278 -3.6878 -0.0004 16 1 3.2443 -3.4027 -0.2715 17 6 2.1807 -4.2424 1.3999 18 6 3.3460 -4.3848 2.1383 19 6 3.2542 -4.8951 3.4239 20 6 2.0145 -5.2527 3.9198 21 7 0.9278 -5.1080 3.1872 22 6 0.9768 -4.6214 1.9624 23 1 -0.4850 0.8400 0.0004 24 1 0.2642 -1.8880 -1.9839 25 1 2.4492 -5.2519 -1.5049 26 1 0.9574 -5.3830 -0.5213 27 1 4.3017 -4.1011 1.7229 28 1 4.1409 -5.0162 4.0287 29 1 1.9351 -5.6548 4.9189 30 1 0.0653 -4.5179 1.3923 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261269018.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:24 Heat of formation + Delta-G solvation = -33.073746 kcal Electronic energy + Delta-G solvation = -15863.062174 eV Core-core repulsion = 13235.652644 eV Total energy + Delta-G solvation = -2627.409529 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.57199 -40.37155 -37.56340 -34.70741 -33.84265 -32.74114 -30.37004 -29.44592 -25.98235 -24.58886 -23.85504 -21.42960 -21.17974 -18.99075 -18.18786 -17.48958 -17.30573 -16.52901 -16.41106 -15.73023 -15.31037 -14.90904 -14.51596 -14.28730 -14.02568 -13.86314 -13.80740 -13.64224 -12.88164 -12.50158 -12.36164 -12.21822 -11.95464 -11.49618 -10.93712 -10.68453 -10.51442 -10.27293 -9.70287 -9.60392 -8.26386 -6.42719 0.29025 0.48643 1.39819 1.44143 1.52179 1.78515 2.36413 2.73246 2.97427 3.22203 3.54612 3.76651 3.90020 3.97732 4.13640 4.22103 4.29971 4.42955 4.58011 4.75638 4.89796 4.93938 5.03590 5.29896 5.43797 5.55341 5.66872 5.91495 5.91856 6.21519 6.46060 6.81045 7.14309 7.31038 7.52398 8.79421 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.010324 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.376776 B = 2711.386348 C = 3665.879490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.028 3.972 3 Si 0.955 3.045 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.256 3.744 10 H 0.028 0.972 11 N -0.700 5.700 12 C 0.495 3.505 13 O -0.614 6.614 14 C -0.134 4.134 15 C -0.042 4.042 16 H 0.102 0.898 17 C -0.110 4.110 18 C -0.074 4.074 19 C -0.162 4.162 20 C 0.075 3.925 21 N -0.512 5.512 22 C 0.085 3.915 23 H 0.267 0.733 24 H 0.395 0.605 25 H 0.117 0.883 26 H 0.107 0.893 27 H 0.156 0.844 28 H 0.170 0.830 29 H 0.181 0.819 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.234 -7.425 7.096 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.780 3.220 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.090 0.910 9 C 0.154 3.846 10 H 0.046 0.954 11 N -0.348 5.348 12 C 0.282 3.718 13 O -0.499 6.499 14 C -0.173 4.173 15 C -0.062 4.062 16 H 0.120 0.880 17 C -0.112 4.112 18 C -0.100 4.100 19 C -0.181 4.181 20 C -0.081 4.081 21 N -0.221 5.221 22 C -0.071 4.071 23 H 0.076 0.924 24 H 0.232 0.768 25 H 0.135 0.865 26 H 0.125 0.875 27 H 0.173 0.827 28 H 0.188 0.812 29 H 0.198 0.802 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.145 -7.818 7.016 12.704 hybrid contribution 0.376 1.856 -0.772 2.045 sum 7.521 -5.962 6.244 11.450 Atomic orbital electron populations 1.70043 1.07334 1.28154 1.49306 1.25810 0.95530 1.02749 0.93380 0.85589 0.79200 0.79248 0.77934 1.20558 1.21310 1.18489 1.21612 0.94393 0.90993 1.50870 0.91013 1.19409 0.91741 0.93411 0.80002 0.95381 1.47291 1.56147 1.12080 1.19312 1.21500 0.79283 0.84248 0.86752 1.90608 1.57728 1.77847 1.23720 1.22413 1.01413 0.97702 0.95822 1.21063 1.01019 0.93612 0.90504 0.87976 1.20566 0.94917 0.99106 0.96592 1.21835 0.98575 0.95261 0.94310 1.22472 1.00220 0.99344 0.96108 1.23286 0.88062 0.96510 1.00278 1.67649 1.33877 1.14150 1.06449 1.22495 0.97469 0.95340 0.91783 0.92428 0.76837 0.86501 0.87497 0.82666 0.81218 0.80207 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.71 13.27 21.45 0.28 -48.43 16 2 C 0.03 1.39 5.44 84.66 0.46 1.86 16 3 Si 0.95 40.18 29.54 68.60 2.03 42.21 16 4 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.54 -26.15 8.71 25.60 0.22 -25.92 16 8 H 0.07 3.33 7.58 -2.91 -0.02 3.31 16 9 C 0.26 11.35 2.70 44.70 0.12 11.47 16 10 H 0.03 1.41 6.69 -2.39 -0.02 1.39 16 11 N -0.70 -32.02 5.85 -442.95 -2.59 -34.61 16 12 C 0.49 21.34 8.43 87.90 0.74 22.09 16 13 O -0.61 -30.28 18.03 -3.04 -0.05 -30.34 16 14 C -0.13 -4.43 6.34 30.59 0.19 -4.24 16 15 C -0.04 -1.46 2.88 -10.48 -0.03 -1.49 16 16 H 0.10 3.31 7.62 -2.39 -0.02 3.29 16 17 C -0.11 -3.44 4.97 -19.77 -0.10 -3.54 16 18 C -0.07 -1.86 9.83 22.47 0.22 -1.64 16 19 C -0.16 -3.42 10.11 22.36 0.23 -3.19 16 20 C 0.08 1.84 11.18 84.69 0.95 2.79 16 21 N -0.51 -16.43 10.36 -195.85 -2.03 -18.46 16 22 C 0.09 2.88 9.23 84.67 0.78 3.66 16 23 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 24 H 0.40 19.39 8.96 -92.71 -0.83 18.56 16 25 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 26 H 0.11 3.28 7.09 -2.39 -0.02 3.27 16 27 H 0.16 3.11 8.04 -2.91 -0.02 3.09 16 28 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 29 H 0.18 3.07 8.06 -2.91 -0.02 3.04 16 30 H 0.14 4.86 7.36 -2.91 -0.02 4.84 16 Total: -1.00 -62.65 264.10 1.76 -60.89 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.33 Total: 26.90 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 3.79 Total: 1.84 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -4.34 Total: -101.50 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.05 Total: -30.34 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -62.65 1.76 -60.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269018.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.815 kcal (2) G-P(sol) polarization free energy of solvation -62.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds