Wall clock time and date at job start Mon Mar 30 2020 03:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35914 * 117.00054 * 2 1 4 4 C 1.36302 * 119.87476 * 5.27816 * 3 2 1 5 5 C 1.41118 * 120.53654 * 179.97438 * 4 3 2 6 6 C 1.41319 * 120.00932 * 180.02562 * 5 4 3 7 7 H 1.07993 * 120.00299 * 332.63927 * 6 5 4 8 8 C 1.39845 * 119.99980 * 152.64505 * 6 5 4 9 9 N 1.30899 * 120.00407 * 163.04455 * 8 6 5 10 10 Si 1.86803 * 120.00104 * 343.04063 * 8 6 5 11 11 H 1.48502 * 109.47069 * 95.32375 * 10 8 6 12 12 H 1.48501 * 109.47220 * 215.32993 * 10 8 6 13 13 H 1.48500 * 109.46940 * 335.32623 * 10 8 6 14 14 C 1.40307 * 119.98344 * 0.03009 * 5 4 3 15 15 C 1.39442 * 119.39981 * 359.97438 * 14 5 4 16 16 C 1.46139 * 133.78516 * 179.97438 * 15 14 5 17 17 N 1.30228 * 107.68641 * 180.02562 * 16 15 14 18 18 N 1.39825 * 110.13039 * 359.97438 * 17 16 15 19 19 C 1.46496 * 125.39348 * 179.97438 * 18 17 16 20 20 C 1.36787 * 109.21079 * 0.02562 * 18 17 16 21 21 H 1.09000 * 109.46682 * 300.59202 * 1 2 3 22 22 H 1.08997 * 109.46787 * 60.58872 * 1 2 3 23 23 H 1.08998 * 109.46964 * 180.58697 * 1 2 3 24 24 H 1.08003 * 119.73605 * 359.97438 * 4 3 2 25 25 H 0.96993 * 120.00287 * 180.02562 * 9 8 6 26 26 H 1.07993 * 120.29762 * 179.97438 * 14 5 4 27 27 H 1.08002 * 126.15803 * 0.02562 * 16 15 14 28 28 H 1.08997 * 109.47760 * 90.02820 * 19 18 17 29 29 H 1.09001 * 109.47102 * 210.02561 * 19 18 17 30 30 H 1.09001 * 109.47234 * 330.02189 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.3057 2.3502 0.1087 5 6 1.9319 3.6149 0.1108 6 6 1.1535 4.7888 0.2246 7 1 0.1309 4.7945 -0.1226 8 6 1.7074 5.9433 0.7868 9 7 1.1312 7.1037 0.6000 10 14 3.2697 5.8295 1.8046 11 1 4.4438 6.1216 0.9435 12 1 3.2112 6.8158 2.9133 13 1 3.3960 4.4606 2.3661 14 6 3.3276 3.7064 -0.0004 15 6 4.0834 2.5398 -0.1116 16 6 5.5138 2.2702 -0.2412 17 7 5.6685 0.9789 -0.3085 18 7 4.4267 0.3408 -0.2321 19 6 4.2130 -1.1078 -0.2759 20 6 3.4430 1.2836 -0.1112 21 1 -0.3633 0.5230 0.8847 22 1 -0.3633 0.5047 -0.8952 23 1 -0.3633 -1.0276 0.0105 24 1 0.2311 2.2846 0.1940 25 1 1.5156 7.9044 0.9896 26 1 3.8120 4.6715 0.0002 27 1 6.3010 3.0089 -0.2752 28 1 4.2447 -1.5106 0.7364 29 1 3.2401 -1.3182 -0.7203 30 1 4.9949 -1.5725 -0.8766 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261269730.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:48 Heat of formation + Delta-G solvation = 28.556566 kcal Electronic energy + Delta-G solvation = -15989.042009 eV Core-core repulsion = 13364.304971 eV Total energy + Delta-G solvation = -2624.737038 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.98783 -39.86923 -37.68816 -35.01352 -33.91227 -31.66475 -30.44479 -28.40972 -27.82759 -25.93885 -23.52308 -22.42750 -21.55998 -19.68577 -18.39550 -17.54569 -17.20252 -16.81741 -16.73067 -15.90322 -15.88293 -14.96771 -14.73021 -14.49277 -14.09107 -13.82300 -13.37379 -13.27412 -12.89284 -12.86637 -12.62077 -12.38423 -11.88552 -11.76536 -11.52382 -11.41267 -10.90962 -10.42529 -9.44588 -8.86068 -8.41447 -6.38655 0.22203 0.77437 1.31983 1.40058 1.54557 1.71009 1.72559 2.17587 2.41557 2.55956 3.42459 3.76139 3.83863 4.20301 4.35845 4.43183 4.46555 4.50461 4.59993 4.65706 4.73412 4.77149 4.86556 5.08377 5.23059 5.30442 5.70727 5.73794 5.98675 6.25349 6.31636 6.43311 6.64765 6.83791 6.91005 8.21929 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.010589 C = 0.007941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.126576 B = 2643.708178 C = 3525.352684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.332 6.332 3 C 0.137 3.863 4 C -0.233 4.233 5 C 0.079 3.921 6 C -0.473 4.473 7 H 0.063 0.937 8 C 0.051 3.949 9 N -0.850 5.850 10 Si 0.964 3.036 11 H -0.256 1.256 12 H -0.283 1.283 13 H -0.258 1.258 14 C -0.243 4.243 15 C -0.114 4.114 16 C 0.036 3.964 17 N -0.264 5.264 18 N -0.411 5.411 19 C 0.116 3.884 20 C 0.006 3.994 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.129 0.871 24 H 0.132 0.868 25 H 0.293 0.707 26 H 0.105 0.895 27 H 0.220 0.780 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.027 -11.433 0.210 11.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.247 6.247 3 C 0.089 3.911 4 C -0.255 4.255 5 C 0.075 3.925 6 C -0.503 4.503 7 H 0.081 0.919 8 C -0.164 4.164 9 N -0.476 5.476 10 Si 0.789 3.211 11 H -0.181 1.181 12 H -0.211 1.211 13 H -0.182 1.182 14 C -0.265 4.265 15 C -0.122 4.122 16 C -0.159 4.159 17 N -0.080 5.080 18 N -0.204 5.204 19 C -0.025 4.025 20 C -0.105 4.105 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.148 0.852 24 H 0.150 0.850 25 H 0.104 0.896 26 H 0.123 0.877 27 H 0.236 0.764 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.809 -12.495 0.108 13.064 hybrid contribution -0.675 1.287 0.401 1.508 sum 3.134 -11.208 0.509 11.649 Atomic orbital electron populations 1.23246 0.76886 1.05266 1.01670 1.85907 1.23051 1.26175 1.89545 1.17380 0.87906 0.85108 1.00662 1.20948 0.99765 0.91115 1.13623 1.17413 0.91645 0.92525 0.90868 1.19328 0.99856 0.94094 1.37054 0.91866 1.26719 1.00537 0.93705 0.95431 1.69730 1.40929 0.99958 1.37017 0.85492 0.78431 0.78875 0.78294 1.18107 1.21073 1.18179 1.20326 0.93322 0.95363 1.17494 1.19767 0.93457 0.92483 1.06471 1.25356 0.94680 0.93233 1.02661 1.76207 1.04650 1.08331 1.18773 1.47924 1.00744 1.06235 1.65531 1.21843 1.03659 0.73750 1.03198 1.17928 0.88545 0.90108 1.13969 0.92757 0.92781 0.85246 0.85005 0.89645 0.87696 0.76354 0.91259 0.89220 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.82 113.37 1.11 1.70 16 2 O -0.33 -11.25 8.82 -92.58 -0.82 -12.07 16 3 C 0.14 5.72 6.66 22.32 0.15 5.87 16 4 C -0.23 -10.47 8.72 22.53 0.20 -10.27 16 5 C 0.08 4.02 5.19 -21.31 -0.11 3.91 16 6 C -0.47 -26.03 9.57 23.42 0.22 -25.80 16 7 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 8 C 0.05 2.69 5.43 85.22 0.46 3.15 16 9 N -0.85 -46.11 13.93 21.81 0.30 -45.81 16 10 Si 0.96 43.24 24.41 68.60 1.67 44.92 16 11 H -0.26 -10.76 6.70 99.48 0.67 -10.10 16 12 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.26 -12.06 6.70 99.48 0.67 -11.39 16 14 C -0.24 -11.83 7.13 23.06 0.16 -11.67 16 15 C -0.11 -5.14 6.34 -20.26 -0.13 -5.27 16 16 C 0.04 1.37 12.30 86.98 1.07 2.44 16 17 N -0.26 -10.01 12.39 -52.94 -0.66 -10.67 16 18 N -0.41 -15.63 4.04 -360.17 -1.45 -17.08 16 19 C 0.12 3.19 11.11 127.77 1.42 4.61 16 20 C 0.01 0.27 6.88 39.56 0.27 0.54 16 21 H 0.05 1.37 7.37 -2.39 -0.02 1.35 16 22 H 0.05 1.35 7.90 -2.39 -0.02 1.33 16 23 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.13 5.40 6.18 -2.91 -0.02 5.38 16 25 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 26 H 0.11 5.05 4.28 -2.91 -0.01 5.03 16 27 H 0.22 6.32 8.06 -2.91 -0.02 6.30 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.09 2.36 6.79 -2.39 -0.02 2.34 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -64.26 254.59 4.97 -59.29 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.08 Total: 12.19 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: 4.83 Total: -30.78 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -1.81 Total: -73.55 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.82 Total: -12.07 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.67 Total: 44.92 kcal Total: -64.26 4.97 -59.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269730.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.848 kcal (2) G-P(sol) polarization free energy of solvation -64.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds