Wall clock time and date at job start Mon Mar 30 2020 03:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46606 * 110.99897 * 2 1 4 4 C 1.50687 * 110.07190 * 184.28616 * 3 2 1 5 5 O 1.21290 * 120.30557 * 215.02782 * 4 3 2 6 6 N 1.35146 * 119.38098 * 35.05189 * 4 3 2 7 7 C 1.40249 * 118.48279 * 359.24486 * 6 4 3 8 8 C 1.37681 * 120.33673 * 161.77338 * 7 6 4 9 9 C 1.40867 * 119.56646 * 180.22086 * 8 7 6 10 10 C 1.41129 * 120.16907 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99988 * 154.67597 * 10 9 8 12 12 C 1.39835 * 120.00242 * 334.68088 * 10 9 8 13 13 N 1.30919 * 119.99642 * 342.88522 * 12 10 9 14 14 Si 1.86797 * 120.00408 * 162.88036 * 12 10 9 15 15 H 1.48501 * 109.46754 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47201 * 119.99635 * 14 12 10 17 17 H 1.48499 * 109.47268 * 240.00258 * 14 12 10 18 18 C 1.40919 * 119.66303 * 359.75850 * 9 8 7 19 19 C 1.36327 * 120.19421 * 0.39624 * 18 9 8 20 20 C 1.38813 * 111.00171 * 234.75219 * 2 1 3 21 21 H 1.09000 * 109.46737 * 185.24340 * 1 2 3 22 22 H 1.08992 * 109.47475 * 305.24781 * 1 2 3 23 23 H 1.08996 * 109.47132 * 65.24870 * 1 2 3 24 24 H 1.09001 * 109.36928 * 304.47023 * 3 2 1 25 25 H 1.08997 * 109.36765 * 64.22191 * 3 2 1 26 26 H 0.96996 * 120.76396 * 179.26660 * 6 4 3 27 27 H 1.07998 * 120.21578 * 0.23847 * 8 7 6 28 28 H 0.96998 * 120.00095 * 180.02562 * 13 12 10 29 29 H 1.07999 * 119.90511 * 180.14521 * 18 9 8 30 30 H 1.07997 * 119.80797 * 179.84692 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9944 1.3687 0.0000 4 6 3.4974 1.3457 -0.1058 5 8 4.1644 2.1774 0.4726 6 7 4.0950 0.3901 -0.8515 7 6 3.2876 -0.5616 -1.4912 8 6 3.7857 -1.3063 -2.5366 9 6 2.9590 -2.2545 -3.1705 10 6 3.4564 -3.0243 -4.2437 11 1 3.0229 -3.9890 -4.4628 12 6 4.5105 -2.5382 -5.0234 13 7 4.8155 -1.2655 -4.9913 14 14 5.4834 -3.7047 -6.1106 15 1 4.9431 -5.0806 -5.9681 16 1 5.3692 -3.2728 -7.5268 17 1 6.9108 -3.6881 -5.7015 18 6 1.6343 -2.4337 -2.7246 19 6 1.1522 -1.6878 -1.6903 20 6 1.9665 -0.7479 -1.0583 21 1 -0.3633 -1.0234 0.0939 22 1 -0.3634 0.5930 0.8392 23 1 -0.3633 0.4302 -0.9332 24 1 1.5806 1.9147 -0.8478 25 1 1.7064 1.8664 0.9260 26 1 5.0604 0.3629 -0.9420 27 1 4.8037 -1.1645 -2.8683 28 1 5.5465 -0.9281 -5.5324 29 1 0.9978 -3.1613 -3.2062 30 1 0.1352 -1.8285 -1.3553 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261293039.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:26 Heat of formation + Delta-G solvation = -5.618109 kcal Electronic energy + Delta-G solvation = -15926.278224 eV Core-core repulsion = 13300.059260 eV Total energy + Delta-G solvation = -2626.218964 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.29033 -37.88546 -36.04598 -34.48595 -33.26169 -29.48921 -28.51602 -28.00231 -25.87804 -23.36334 -21.81966 -20.98004 -18.81434 -17.68719 -16.78345 -16.47561 -15.72769 -15.12121 -15.02102 -13.96946 -13.80724 -13.52628 -13.19789 -13.00467 -12.44830 -12.07389 -11.97129 -11.71366 -11.46728 -11.12248 -11.00905 -10.75912 -10.14815 -9.95347 -9.74706 -9.53200 -9.37520 -8.80208 -7.33824 -6.97824 -6.67573 -4.44194 2.28067 2.67281 2.98803 3.01345 3.06358 3.27437 3.75691 3.83387 4.29654 4.53372 4.96014 5.36554 5.49601 5.57003 5.59493 5.79817 5.92521 6.13713 6.31393 6.52837 6.71619 6.92965 6.99892 7.06084 7.23124 7.45342 7.52988 7.80858 7.87174 7.97116 8.16361 8.43308 8.58482 8.72321 8.78948 10.04043 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.034875 B = 0.008000 C = 0.006689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.676112 B = 3499.228683 C = 4185.262189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.476 5.476 3 C 0.040 3.960 4 C 0.526 3.474 5 O -0.553 6.553 6 N -0.653 5.653 7 C 0.137 3.863 8 C -0.173 4.173 9 C 0.118 3.882 10 C -0.454 4.454 11 H 0.082 0.918 12 C 0.074 3.926 13 N -0.791 5.791 14 Si 0.909 3.091 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.271 1.271 18 C -0.215 4.215 19 C -0.095 4.095 20 C -0.061 4.061 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.033 0.967 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.406 0.594 27 H 0.127 0.873 28 H 0.282 0.718 29 H 0.099 0.901 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 0.519 2.864 5.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.195 5.195 3 C -0.090 4.090 4 C 0.313 3.687 5 O -0.431 6.431 6 N -0.297 5.297 7 C 0.042 3.958 8 C -0.196 4.196 9 C 0.115 3.885 10 C -0.483 4.483 11 H 0.100 0.900 12 C -0.144 4.144 13 N -0.416 5.416 14 Si 0.734 3.266 15 H -0.183 1.183 16 H -0.199 1.199 17 H -0.196 1.196 18 C -0.235 4.235 19 C -0.116 4.116 20 C -0.159 4.159 21 H 0.095 0.905 22 H 0.082 0.918 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.125 0.875 26 H 0.243 0.757 27 H 0.145 0.855 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.671 1.008 3.568 5.217 hybrid contribution 0.648 -0.122 -1.360 1.511 sum -3.023 0.886 2.208 3.847 Atomic orbital electron populations 1.22440 0.86522 1.02663 1.00306 1.58884 1.07962 1.09830 1.42806 1.22185 0.91592 0.91759 1.03465 1.20665 0.90666 0.80001 0.77333 1.90694 1.66509 1.39281 1.46633 1.43747 1.09944 1.27864 1.48136 1.17493 0.89746 0.93336 0.95202 1.20816 1.01172 1.02029 0.95547 1.17390 0.89788 0.90363 0.90995 1.19558 1.13809 1.04062 1.10876 0.89983 1.25941 0.96395 0.95174 0.96905 1.69849 1.24722 1.13399 1.33632 0.86235 0.79697 0.81385 0.79325 1.18281 1.19944 1.19645 1.20665 0.96075 1.05113 1.01660 1.20161 0.97374 0.97487 0.96596 1.17919 0.94016 1.05135 0.98799 0.90504 0.91776 0.94873 0.91669 0.87545 0.75665 0.85495 0.90745 0.88320 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 8.50 60.07 0.51 0.91 16 2 N -0.48 -8.66 4.89 -180.23 -0.88 -9.54 16 3 C 0.04 0.69 5.61 -5.14 -0.03 0.66 16 4 C 0.53 10.54 7.91 -10.83 -0.09 10.46 16 5 O -0.55 -12.07 17.96 5.55 0.10 -11.97 16 6 N -0.65 -13.37 5.49 -9.65 -0.05 -13.42 16 7 C 0.14 3.08 6.49 -83.45 -0.54 2.53 16 8 C -0.17 -4.20 8.56 -38.79 -0.33 -4.53 16 9 C 0.12 2.92 5.57 -106.79 -0.59 2.33 16 10 C -0.45 -11.20 9.03 -37.89 -0.34 -11.55 16 11 H 0.08 1.94 7.90 -52.48 -0.41 1.53 16 12 C 0.07 1.75 5.14 -17.34 -0.09 1.66 16 13 N -0.79 -19.29 10.96 55.54 0.61 -18.68 16 14 Si 0.91 17.67 29.59 -169.99 -5.03 12.64 16 15 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 16 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 18 C -0.21 -4.82 9.72 -39.26 -0.38 -5.20 16 19 C -0.10 -1.96 8.93 -39.80 -0.36 -2.32 16 20 C -0.06 -1.29 5.94 -83.47 -0.50 -1.78 16 21 H 0.08 1.05 6.50 -51.93 -0.34 0.71 16 22 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 23 H 0.03 0.47 8.11 -51.93 -0.42 0.05 16 24 H 0.07 1.08 8.13 -51.93 -0.42 0.65 16 25 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 26 H 0.41 7.72 8.90 -40.82 -0.36 7.35 16 27 H 0.13 3.16 6.20 -52.49 -0.33 2.84 16 28 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 29 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.10 1.82 5.84 -52.49 -0.31 1.51 16 LS Contribution 255.82 15.07 3.86 3.86 Total: -1.00 -27.42 255.82 -7.13 -34.55 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -2.99 Total: 9.40 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.74 Total: -6.83 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.33 Total: -41.65 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.10 Total: -11.97 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.42 -7.13 -34.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293039.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.937 kcal (2) G-P(sol) polarization free energy of solvation -27.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds