Wall clock time and date at job start Mon Mar 30 2020 02:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.41588 * 120.25828 * 218.92045 * 3 2 1 5 5 C 1.36000 * 119.02344 * 180.29827 * 4 3 2 6 6 C 1.40727 * 119.51181 * 359.47925 * 5 4 3 7 7 O 1.21982 * 119.75064 * 180.23344 * 6 5 4 8 8 N 1.34543 * 120.50436 * 0.52244 * 6 5 4 9 9 C 1.46507 * 119.48224 * 179.70659 * 8 6 5 10 10 C 1.52995 * 109.47059 * 270.02344 * 9 8 6 11 11 C 1.53008 * 109.47114 * 180.02562 * 10 9 8 12 12 C 1.50692 * 109.47425 * 180.02562 * 11 10 9 13 13 H 1.08007 * 119.99830 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00405 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99515 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00243 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47253 * 89.99500 * 16 14 12 18 18 H 1.48499 * 109.47100 * 209.99411 * 16 14 12 19 19 H 1.48499 * 109.47134 * 329.99323 * 16 14 12 20 20 C 1.34722 * 121.03168 * 359.73457 * 8 6 5 21 21 H 1.08002 * 120.48551 * 0.02562 * 4 3 2 22 22 H 1.08000 * 120.24747 * 179.71867 * 5 4 3 23 23 H 1.08994 * 109.47160 * 30.02630 * 9 8 6 24 24 H 1.09004 * 109.46872 * 150.02753 * 9 8 6 25 25 H 1.09002 * 109.47209 * 299.99885 * 10 9 8 26 26 H 1.08993 * 109.47341 * 60.00620 * 10 9 8 27 27 H 1.08998 * 109.46928 * 300.00711 * 11 10 9 28 28 H 1.09009 * 109.46879 * 59.99834 * 11 10 9 29 29 H 0.97000 * 119.99772 * 180.02562 * 15 14 12 30 30 H 1.08004 * 119.77383 * 180.02562 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2810 0.9525 0.7683 5 6 4.6407 0.9342 0.7451 6 6 5.3078 -0.0328 -0.0297 7 8 6.5272 -0.0559 -0.0503 8 7 4.6109 -0.9284 -0.7524 9 6 5.3284 -1.9212 -1.5562 10 6 5.5767 -1.3598 -2.9576 11 6 6.3254 -2.3969 -3.7972 12 6 6.5706 -1.8438 -5.1773 13 1 6.2264 -0.8518 -5.4305 14 6 7.2334 -2.6043 -6.1172 15 7 7.6520 -3.8124 -5.8090 16 14 7.5379 -1.9183 -7.8277 17 1 8.8399 -1.2045 -7.8503 18 1 7.5669 -3.0319 -8.8097 19 1 6.4490 -0.9732 -8.1832 20 6 3.2637 -0.9262 -0.7491 21 1 2.7529 1.6851 1.3606 22 1 5.2044 1.6539 1.3201 23 1 6.2827 -2.1512 -1.0825 24 1 4.7307 -2.8299 -1.6295 25 1 4.6223 -1.1299 -3.4313 26 1 6.1743 -0.4513 -2.8844 27 1 7.2797 -2.6274 -3.3236 28 1 5.7274 -3.3054 -3.8704 29 1 8.1186 -4.3474 -6.4701 30 1 2.7247 -1.6547 -1.3365 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309055441.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:28 Heat of formation + Delta-G solvation = 12.928771 kcal Electronic energy + Delta-G solvation = -14963.976439 eV Core-core repulsion = 12338.561729 eV Total energy + Delta-G solvation = -2625.414710 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.56888 -37.55670 -36.49296 -35.37981 -33.53992 -31.49978 -30.40396 -27.39749 -24.75192 -24.15657 -22.70371 -20.62061 -19.36659 -17.75853 -16.95337 -16.43182 -15.91962 -15.35427 -14.57530 -14.43766 -14.15973 -13.88485 -13.85094 -13.30005 -12.81229 -12.73715 -12.30187 -12.05589 -11.66578 -11.59706 -11.04694 -10.91393 -10.71497 -10.32542 -10.02813 -9.93752 -9.52480 -9.21927 -8.43364 -8.11603 -6.08511 -4.11443 0.57707 1.16320 2.31164 2.69265 2.97002 3.28350 3.34845 3.37684 3.63899 3.77940 4.29021 4.40121 4.56970 4.66915 4.95764 5.24586 5.28615 5.48127 5.62686 5.74601 5.78071 5.87889 6.13923 6.30606 6.58330 6.84053 6.89949 7.37707 7.51936 7.63574 7.88320 7.90709 8.30158 8.94358 9.53428 11.02759 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.032531 B = 0.005102 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.513137 B = 5486.602379 C = 5916.893231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.276 3.724 3 C -0.163 4.163 4 C 0.010 3.990 5 C -0.238 4.238 6 C 0.512 3.488 7 O -0.526 6.526 8 N -0.479 5.479 9 C 0.079 3.921 10 C -0.123 4.123 11 C 0.025 3.975 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.220 3.780 21 H 0.140 0.860 22 H 0.155 0.845 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.021 0.979 28 H 0.019 0.981 29 H 0.262 0.738 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.475 5.761 12.177 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.039 4.039 3 C -0.173 4.173 4 C -0.013 4.013 5 C -0.260 4.260 6 C 0.313 3.687 7 O -0.406 6.406 8 N -0.183 5.183 9 C -0.040 4.040 10 C -0.161 4.161 11 C -0.012 4.012 12 C -0.561 4.561 13 H 0.074 0.926 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 C 0.081 3.919 21 H 0.158 0.842 22 H 0.173 0.827 23 H 0.123 0.877 24 H 0.113 0.887 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.218 5.564 12.078 16.181 hybrid contribution 0.563 0.319 -1.012 1.201 sum -8.656 5.883 11.066 15.231 Atomic orbital electron populations 1.81285 1.11800 1.08359 1.09339 1.25033 0.91781 0.93721 0.93410 1.15249 0.85216 1.05277 1.11556 1.21215 0.93793 0.93851 0.92405 1.21989 0.94488 1.03232 1.06282 1.17320 0.88294 0.82181 0.80920 1.91000 1.12592 1.72063 1.64916 1.45763 1.05861 1.29033 1.37659 1.22646 0.98746 0.89462 0.93178 1.22043 1.01342 1.01598 0.91153 1.19041 0.95262 0.93045 0.93894 1.21159 1.36982 1.01378 0.96608 0.92632 1.25006 0.95541 0.94858 0.98896 1.69953 1.38879 1.09590 1.34895 0.86569 0.78731 0.78613 0.83970 1.20559 1.21160 1.19864 1.22288 0.83725 0.94611 0.91248 0.84218 0.82721 0.87652 0.88738 0.92656 0.92073 0.96021 0.96245 0.92868 0.80798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.44 18.54 41.84 0.78 -4.67 16 2 C 0.28 2.81 15.34 -22.47 -0.34 2.47 16 3 C -0.16 -1.44 5.74 -106.78 -0.61 -2.06 16 4 C 0.01 0.08 9.83 -39.11 -0.38 -0.30 16 5 C -0.24 -2.46 9.96 -39.45 -0.39 -2.85 16 6 C 0.51 7.21 7.40 -15.42 -0.11 7.09 16 7 O -0.53 -9.71 16.59 4.94 0.08 -9.62 16 8 N -0.48 -5.91 2.55 -119.28 -0.30 -6.21 16 9 C 0.08 1.13 5.31 -4.04 -0.02 1.11 16 10 C -0.12 -2.28 5.48 -26.73 -0.15 -2.42 16 11 C 0.03 0.60 4.97 -27.88 -0.14 0.46 16 12 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 13 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 16 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 20 C 0.22 2.02 10.00 -16.37 -0.16 1.86 16 21 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 22 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 23 H 0.11 1.67 7.36 -51.93 -0.38 1.28 16 24 H 0.09 1.09 8.00 -51.93 -0.42 0.68 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.17 1.13 8.02 -52.48 -0.42 0.71 16 LS Contribution 278.53 15.07 4.20 4.20 Total: -1.00 -32.58 278.53 -5.56 -38.14 By element: Atomic # 1 Polarization: -1.72 SS G_CDS: -3.30 Total: -5.02 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.73 Total: -7.69 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 1.21 Total: -36.20 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.58 -5.56 -38.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309055441.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.069 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds