Wall clock time and date at job start Mon Mar 30 2020 02:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.41588 * 120.25828 * 218.92045 * 3 2 1 5 5 C 1.36000 * 119.02344 * 180.29827 * 4 3 2 6 6 C 1.40727 * 119.51181 * 359.47925 * 5 4 3 7 7 O 1.21982 * 119.75064 * 180.23344 * 6 5 4 8 8 N 1.34543 * 120.50436 * 0.52244 * 6 5 4 9 9 C 1.46507 * 119.48224 * 179.70659 * 8 6 5 10 10 C 1.52995 * 109.47059 * 270.02344 * 9 8 6 11 11 C 1.53008 * 109.47114 * 180.02562 * 10 9 8 12 12 C 1.50692 * 109.47425 * 180.02562 * 11 10 9 13 13 H 1.08007 * 119.99830 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00405 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99515 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00243 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47253 * 89.99500 * 16 14 12 18 18 H 1.48499 * 109.47100 * 209.99411 * 16 14 12 19 19 H 1.48499 * 109.47134 * 329.99323 * 16 14 12 20 20 C 1.34722 * 121.03168 * 359.73457 * 8 6 5 21 21 H 1.08002 * 120.48551 * 0.02562 * 4 3 2 22 22 H 1.08000 * 120.24747 * 179.71867 * 5 4 3 23 23 H 1.08994 * 109.47160 * 30.02630 * 9 8 6 24 24 H 1.09004 * 109.46872 * 150.02753 * 9 8 6 25 25 H 1.09002 * 109.47209 * 299.99885 * 10 9 8 26 26 H 1.08993 * 109.47341 * 60.00620 * 10 9 8 27 27 H 1.08998 * 109.46928 * 300.00711 * 11 10 9 28 28 H 1.09009 * 109.46879 * 59.99834 * 11 10 9 29 29 H 0.97000 * 119.99772 * 180.02562 * 15 14 12 30 30 H 1.08004 * 119.77383 * 180.02562 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2810 0.9525 0.7683 5 6 4.6407 0.9342 0.7451 6 6 5.3078 -0.0328 -0.0297 7 8 6.5272 -0.0559 -0.0503 8 7 4.6109 -0.9284 -0.7524 9 6 5.3284 -1.9212 -1.5562 10 6 5.5767 -1.3598 -2.9576 11 6 6.3254 -2.3969 -3.7972 12 6 6.5706 -1.8438 -5.1773 13 1 6.2264 -0.8518 -5.4305 14 6 7.2334 -2.6043 -6.1172 15 7 7.6520 -3.8124 -5.8090 16 14 7.5379 -1.9183 -7.8277 17 1 8.8399 -1.2045 -7.8503 18 1 7.5669 -3.0319 -8.8097 19 1 6.4490 -0.9732 -8.1832 20 6 3.2637 -0.9262 -0.7491 21 1 2.7529 1.6851 1.3606 22 1 5.2044 1.6539 1.3201 23 1 6.2827 -2.1512 -1.0825 24 1 4.7307 -2.8299 -1.6295 25 1 4.6223 -1.1299 -3.4313 26 1 6.1743 -0.4513 -2.8844 27 1 7.2797 -2.6274 -3.3236 28 1 5.7274 -3.3054 -3.8704 29 1 8.1186 -4.3474 -6.4701 30 1 2.7247 -1.6547 -1.3365 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309055441.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:27 Heat of formation + Delta-G solvation = -6.970905 kcal Electronic energy + Delta-G solvation = -14964.839354 eV Core-core repulsion = 12338.561729 eV Total energy + Delta-G solvation = -2626.277625 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.54183 -38.54570 -37.56407 -36.56759 -35.20043 -33.17031 -31.30628 -29.00482 -26.00969 -25.31751 -23.90552 -22.25116 -20.31874 -18.72250 -18.42612 -17.85403 -17.00573 -16.51933 -16.33998 -15.74078 -15.24743 -14.77170 -14.76273 -14.42732 -14.20049 -14.09336 -13.62080 -13.22035 -13.12548 -12.88805 -12.67996 -12.58062 -12.35793 -11.67909 -11.61363 -11.35609 -11.06895 -10.94911 -10.55418 -9.06059 -8.20885 -6.31022 -0.20744 0.30443 1.37034 1.40940 1.41964 1.52327 1.81117 2.07169 2.41117 2.78526 2.92325 3.13399 3.60201 3.73654 3.83988 4.03214 4.14354 4.29509 4.46429 4.74694 4.81552 4.92631 5.06103 5.12480 5.15391 5.40197 5.50074 5.68552 5.83166 5.96356 6.22969 6.55609 6.84883 6.89766 7.38209 8.90565 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.032531 B = 0.005102 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.513137 B = 5486.602379 C = 5916.893231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.303 3.697 3 C -0.150 4.150 4 C 0.037 3.963 5 C -0.250 4.250 6 C 0.498 3.502 7 O -0.588 6.588 8 N -0.480 5.480 9 C 0.091 3.909 10 C -0.107 4.107 11 C 0.027 3.973 12 C -0.544 4.544 13 H 0.056 0.944 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.960 3.040 17 H -0.277 1.277 18 H -0.280 1.280 19 H -0.263 1.263 20 C 0.222 3.778 21 H 0.176 0.824 22 H 0.167 0.833 23 H 0.083 0.917 24 H 0.129 0.871 25 H 0.072 0.928 26 H 0.037 0.963 27 H -0.009 1.009 28 H 0.013 0.987 29 H 0.264 0.736 30 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.468 6.664 12.299 17.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.012 4.012 3 C -0.159 4.159 4 C 0.015 3.985 5 C -0.272 4.272 6 C 0.303 3.697 7 O -0.472 6.472 8 N -0.184 5.184 9 C -0.029 4.029 10 C -0.146 4.146 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.075 0.925 14 C -0.195 4.195 15 N -0.570 5.570 16 Si 0.785 3.215 17 H -0.203 1.203 18 H -0.206 1.206 19 H -0.187 1.187 20 C 0.085 3.915 21 H 0.194 0.806 22 H 0.184 0.816 23 H 0.102 0.898 24 H 0.147 0.853 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.009 0.991 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -11.270 6.482 12.213 17.838 hybrid contribution 1.098 0.047 -1.009 1.492 sum -10.171 6.529 11.204 16.481 Atomic orbital electron populations 1.81341 1.12963 1.09590 1.10568 1.24912 0.91488 0.92547 0.92245 1.15257 0.84535 1.05035 1.11064 1.21524 0.92784 0.93277 0.90903 1.21969 0.95359 1.03084 1.06767 1.17957 0.87888 0.82740 0.81160 1.90969 1.15077 1.73846 1.67327 1.45541 1.06946 1.28533 1.37368 1.22303 0.99155 0.90757 0.90694 1.21731 1.00771 0.98913 0.93156 1.18922 0.94409 0.94234 0.93498 1.21643 1.36845 1.01511 0.98231 0.92525 1.25888 0.95344 0.95156 1.03066 1.70069 1.39742 1.10878 1.36296 0.85524 0.78772 0.78137 0.79098 1.20274 1.20571 1.18732 1.22750 0.82261 0.95241 0.91286 0.80648 0.81552 0.89808 0.85277 0.90944 0.94460 0.99090 0.96910 0.92724 0.77638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.50 18.54 19.00 0.35 -10.15 16 2 C 0.30 5.09 15.34 88.33 1.36 6.45 16 3 C -0.15 -2.09 5.74 -21.27 -0.12 -2.21 16 4 C 0.04 0.47 9.83 22.58 0.22 0.69 16 5 C -0.25 -4.70 9.96 22.36 0.22 -4.48 16 6 C 0.50 13.84 7.40 84.89 0.63 14.47 16 7 O -0.59 -22.58 16.59 -5.26 -0.09 -22.66 16 8 N -0.48 -11.14 2.55 -649.52 -1.66 -12.80 16 9 C 0.09 2.56 5.31 86.38 0.46 3.02 16 10 C -0.11 -3.98 5.48 30.60 0.17 -3.81 16 11 C 0.03 1.33 4.97 29.85 0.15 1.47 16 12 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 13 H 0.06 3.03 7.74 -2.91 -0.02 3.00 16 14 C 0.00 0.21 5.46 84.65 0.46 0.67 16 15 N -0.93 -55.01 13.29 21.45 0.28 -54.72 16 16 Si 0.96 43.50 29.54 68.60 2.03 45.52 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 19 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 20 C 0.22 3.34 10.00 84.19 0.84 4.19 16 21 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 22 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 23 H 0.08 2.75 7.36 -2.39 -0.02 2.74 16 24 H 0.13 2.70 8.00 -2.38 -0.02 2.69 16 25 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 26 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 27 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 28 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 30 H 0.21 1.76 8.02 -2.91 -0.02 1.74 16 Total: -1.00 -73.00 278.53 6.68 -66.33 By element: Atomic # 1 Polarization: -3.35 SS G_CDS: 1.14 Total: -2.20 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 4.62 Total: -9.31 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -1.02 Total: -77.67 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.09 Total: -22.66 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -73.00 6.68 -66.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309055441.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.355 kcal (2) G-P(sol) polarization free energy of solvation -73.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds