Wall clock time and date at job start Mon Mar 30 2020 02:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43210 * 179.97438 * 2 1 4 4 C 1.36547 * 125.98209 * 231.14140 * 3 2 1 5 5 C 1.40475 * 106.70482 * 180.02562 * 4 3 2 6 6 C 1.35055 * 107.10934 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.61856 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47329 * 89.99798 * 7 6 5 9 9 C 1.47477 * 111.00471 * 265.97357 * 8 7 6 10 10 C 1.53510 * 87.93401 * 221.29481 * 9 8 7 11 11 C 1.50703 * 114.34260 * 139.68104 * 10 9 8 12 12 H 1.07998 * 120.00048 * 266.07329 * 11 10 9 13 13 C 1.37875 * 119.99715 * 86.07899 * 11 10 9 14 14 N 1.31518 * 120.00299 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99813 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47425 * 59.99793 * 15 13 11 17 17 H 1.48504 * 109.46994 * 179.97438 * 15 13 11 18 18 H 1.48510 * 109.47058 * 299.99589 * 15 13 11 19 19 C 1.47477 * 111.00140 * 169.99883 * 8 7 6 20 20 O 1.34052 * 108.76414 * 0.02562 * 6 5 4 21 21 H 1.08000 * 126.65429 * 0.04420 * 4 3 2 22 22 H 1.08001 * 126.44672 * 179.74148 * 5 4 3 23 23 H 1.08996 * 109.47182 * 210.00549 * 7 6 5 24 24 H 1.09002 * 109.46801 * 329.99914 * 7 6 5 25 25 H 1.08995 * 113.47409 * 336.06280 * 9 8 7 26 26 H 1.09005 * 113.47492 * 106.52525 * 9 8 7 27 27 H 1.09003 * 114.17185 * 272.37852 * 10 9 8 28 28 H 0.96996 * 120.00188 * 180.02562 * 14 13 11 29 29 H 1.09001 * 113.47686 * 253.47216 * 19 8 7 30 30 H 1.08998 * 113.47439 * 23.88330 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3700 0.6942 0.8604 5 6 4.6961 0.4043 0.4989 6 6 4.6454 -0.4426 -0.5519 7 6 5.8366 -1.0206 -1.2715 8 7 6.2256 -2.2867 -0.6363 9 6 7.2787 -2.0701 0.3731 10 6 7.9587 -3.3458 -0.1434 11 6 9.4604 -3.2563 -0.2335 12 1 9.9294 -2.9682 -1.1627 13 6 10.2354 -3.5425 0.8702 14 7 9.6644 -3.8940 2.0016 15 14 12.0967 -3.4310 0.7587 16 1 12.4888 -2.0457 0.3945 17 1 12.6934 -3.7846 2.0719 18 1 12.5879 -4.3734 -0.2786 19 6 7.2289 -2.9994 -1.4488 20 8 3.3608 -0.6835 -0.8499 21 1 3.0474 1.3403 1.6635 22 1 5.5884 0.7895 0.9700 23 1 5.5781 -1.2018 -2.3147 24 1 6.6682 -0.3178 -1.2201 25 1 7.8641 -1.1666 0.2028 26 1 6.9205 -2.1539 1.3992 27 1 7.6099 -4.2618 0.3333 28 1 10.2096 -4.0950 2.7782 29 1 6.8286 -3.8709 -1.9669 30 1 7.8003 -2.3440 -2.1061 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597193623.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:22 Heat of formation + Delta-G solvation = 85.674764 kcal Electronic energy + Delta-G solvation = -15060.558230 eV Core-core repulsion = 12438.298022 eV Total energy + Delta-G solvation = -2622.260208 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.72240 -39.04235 -36.76144 -33.39427 -32.91118 -31.64775 -28.65229 -25.96288 -24.91775 -23.25041 -22.14115 -20.98051 -19.34356 -18.75382 -16.83632 -16.36509 -15.68699 -14.95985 -14.56943 -14.23970 -14.14987 -13.64088 -13.42546 -13.20355 -13.03115 -12.89404 -12.47827 -12.00953 -11.72971 -11.24936 -11.02483 -10.72201 -10.42177 -10.08048 -9.93856 -9.44029 -9.06699 -8.55839 -8.44906 -8.19808 -6.12286 -4.17911 0.94581 1.90611 2.33666 2.88252 3.18553 3.25599 3.31695 3.33170 3.99486 4.34166 4.67493 4.80250 5.00271 5.15398 5.27010 5.49889 5.57812 5.78366 5.81355 5.93661 6.17711 6.28205 6.34071 6.54468 6.56297 6.88419 7.03452 7.04267 7.15447 7.63697 7.77570 7.91066 8.27476 8.85500 9.47919 10.97101 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.058153 B = 0.004707 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.375257 B = 5946.898496 C = 6076.908212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C 0.300 3.700 3 C 0.013 3.987 4 C -0.110 4.110 5 C -0.216 4.216 6 C 0.070 3.930 7 C 0.086 3.914 8 N -0.482 5.482 9 C 0.003 3.997 10 C 0.043 3.957 11 C -0.520 4.520 12 H 0.058 0.942 13 C 0.068 3.932 14 N -0.885 5.885 15 Si 0.892 3.108 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.004 4.004 20 O -0.150 6.150 21 H 0.160 0.840 22 H 0.160 0.840 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.263 0.737 29 H 0.066 0.934 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.736 8.548 -3.514 11.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.075 5.075 2 C -0.015 4.015 3 C -0.040 4.040 4 C -0.133 4.133 5 C -0.236 4.236 6 C 0.016 3.984 7 C -0.043 4.043 8 N -0.205 5.205 9 C -0.126 4.126 10 C 0.023 3.977 11 C -0.558 4.558 12 H 0.077 0.923 13 C -0.135 4.135 14 N -0.521 5.521 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.132 4.132 20 O -0.044 6.044 21 H 0.178 0.822 22 H 0.178 0.822 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.198 7.992 -3.412 12.654 hybrid contribution 2.127 0.673 -0.063 2.232 sum -7.071 8.665 -3.475 11.712 Atomic orbital electron populations 1.81303 1.10650 1.08220 1.07279 1.23605 0.89709 0.93934 0.94216 1.16391 0.84266 1.04875 0.98458 1.21873 0.92147 0.99993 0.99295 1.21595 0.98095 1.04080 0.99807 1.22896 0.82035 0.96307 0.97173 1.21344 0.90391 0.94709 0.97807 1.68944 1.29207 1.12748 1.09600 1.24223 0.90593 1.01666 0.96080 1.20088 0.94222 0.94078 0.89263 1.20973 0.90425 1.47298 0.97129 0.92346 1.25016 0.98640 0.94408 0.95438 1.69951 1.35658 1.45188 1.01351 0.86668 0.85466 0.78603 0.77321 1.20200 1.21226 1.20122 1.24071 0.92468 0.97708 0.98929 1.84066 1.16547 1.55776 1.48002 0.82200 0.82222 0.89539 0.89921 0.92382 0.91419 0.91624 0.92697 0.91535 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.65 18.54 41.84 0.78 -4.87 16 2 C 0.30 3.90 15.89 -22.47 -0.36 3.55 16 3 C 0.01 0.16 7.08 -38.26 -0.27 -0.11 16 4 C -0.11 -1.23 10.84 -39.35 -0.43 -1.65 16 5 C -0.22 -2.67 10.77 -39.87 -0.43 -3.10 16 6 C 0.07 0.98 6.90 -35.44 -0.24 0.74 16 7 C 0.09 1.24 5.34 -4.98 -0.03 1.22 16 8 N -0.48 -8.83 6.32 -246.11 -1.55 -10.39 16 9 C 0.00 0.06 7.28 -7.55 -0.06 0.01 16 10 C 0.04 1.00 3.76 -91.24 -0.34 0.65 16 11 C -0.52 -13.31 8.83 -34.44 -0.30 -13.61 16 12 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 13 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 14 N -0.88 -24.47 13.26 55.43 0.74 -23.73 16 15 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.00 -0.07 7.25 -7.55 -0.05 -0.12 16 20 O -0.15 -2.18 10.67 4.81 0.05 -2.13 16 21 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 22 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 23 H 0.09 1.13 8.08 -51.93 -0.42 0.71 16 24 H 0.08 1.10 7.30 -51.93 -0.38 0.72 16 25 H 0.06 1.16 7.38 -51.93 -0.38 0.78 16 26 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.05 7.87 -51.93 -0.41 0.65 16 LS Contribution 276.29 15.07 4.16 4.16 Total: -1.00 -27.60 276.29 -6.71 -34.30 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -3.25 Total: -1.69 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -2.61 Total: -10.74 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: -0.04 Total: -38.99 kcal Atomic # 8 Polarization: -2.18 SS G_CDS: 0.05 Total: -2.13 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.60 -6.71 -34.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193623.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.979 kcal (2) G-P(sol) polarization free energy of solvation -27.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds