Wall clock time and date at job start Mon Mar 30 2020 02:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43210 * 179.97438 * 2 1 4 4 C 1.36547 * 125.98209 * 231.14140 * 3 2 1 5 5 C 1.40475 * 106.70482 * 180.02562 * 4 3 2 6 6 C 1.35055 * 107.10934 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.61856 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47329 * 89.99798 * 7 6 5 9 9 C 1.47477 * 111.00471 * 265.97357 * 8 7 6 10 10 C 1.53510 * 87.93401 * 221.29481 * 9 8 7 11 11 C 1.50703 * 114.34260 * 139.68104 * 10 9 8 12 12 H 1.07998 * 120.00048 * 266.07329 * 11 10 9 13 13 C 1.37875 * 119.99715 * 86.07899 * 11 10 9 14 14 N 1.31518 * 120.00299 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99813 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47425 * 59.99793 * 15 13 11 17 17 H 1.48504 * 109.46994 * 179.97438 * 15 13 11 18 18 H 1.48510 * 109.47058 * 299.99589 * 15 13 11 19 19 C 1.47477 * 111.00140 * 169.99883 * 8 7 6 20 20 O 1.34052 * 108.76414 * 0.02562 * 6 5 4 21 21 H 1.08000 * 126.65429 * 0.04420 * 4 3 2 22 22 H 1.08001 * 126.44672 * 179.74148 * 5 4 3 23 23 H 1.08996 * 109.47182 * 210.00549 * 7 6 5 24 24 H 1.09002 * 109.46801 * 329.99914 * 7 6 5 25 25 H 1.08995 * 113.47409 * 336.06280 * 9 8 7 26 26 H 1.09005 * 113.47492 * 106.52525 * 9 8 7 27 27 H 1.09003 * 114.17185 * 272.37852 * 10 9 8 28 28 H 0.96996 * 120.00188 * 180.02562 * 14 13 11 29 29 H 1.09001 * 113.47686 * 253.47216 * 19 8 7 30 30 H 1.08998 * 113.47439 * 23.88330 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3700 0.6942 0.8604 5 6 4.6961 0.4043 0.4989 6 6 4.6454 -0.4426 -0.5519 7 6 5.8366 -1.0206 -1.2715 8 7 6.2256 -2.2867 -0.6363 9 6 7.2787 -2.0701 0.3731 10 6 7.9587 -3.3458 -0.1434 11 6 9.4604 -3.2563 -0.2335 12 1 9.9294 -2.9682 -1.1627 13 6 10.2354 -3.5425 0.8702 14 7 9.6644 -3.8940 2.0016 15 14 12.0967 -3.4310 0.7587 16 1 12.4888 -2.0457 0.3945 17 1 12.6934 -3.7846 2.0719 18 1 12.5879 -4.3734 -0.2786 19 6 7.2289 -2.9994 -1.4488 20 8 3.3608 -0.6835 -0.8499 21 1 3.0474 1.3403 1.6635 22 1 5.5884 0.7895 0.9700 23 1 5.5781 -1.2018 -2.3147 24 1 6.6682 -0.3178 -1.2201 25 1 7.8641 -1.1666 0.2028 26 1 6.9205 -2.1539 1.3992 27 1 7.6099 -4.2618 0.3333 28 1 10.2096 -4.0950 2.7782 29 1 6.8286 -3.8709 -1.9669 30 1 7.8003 -2.3440 -2.1061 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597193623.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:22 Heat of formation + Delta-G solvation = 68.052481 kcal Electronic energy + Delta-G solvation = -15061.322389 eV Core-core repulsion = 12438.298022 eV Total energy + Delta-G solvation = -2623.024367 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.73153 -40.59352 -37.82599 -34.89200 -34.22496 -32.98568 -30.03110 -27.57073 -26.50379 -24.75478 -23.15698 -22.12975 -20.45083 -20.32657 -18.63892 -17.48091 -16.94578 -16.54181 -16.18570 -15.69600 -15.29082 -14.87083 -14.53276 -14.42946 -14.16139 -13.93359 -13.81646 -13.52431 -13.19388 -12.93135 -12.79367 -12.36844 -11.99599 -11.67645 -11.22424 -11.00016 -10.83205 -10.45465 -9.76988 -9.49240 -8.10329 -6.21590 -0.06044 0.88148 1.34869 1.48558 1.49575 1.57015 1.87806 2.18456 2.47125 2.95420 3.19774 3.40074 3.83007 3.92074 4.08704 4.28914 4.48165 4.56376 4.63112 4.73061 4.81487 4.87703 4.91528 5.01578 5.32163 5.39061 5.45198 5.68322 5.89499 5.95996 6.13658 6.30864 6.37628 6.88652 7.47474 8.99080 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.058153 B = 0.004707 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.375257 B = 5946.898496 C = 6076.908212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.316 3.684 3 C 0.001 3.999 4 C -0.092 4.092 5 C -0.212 4.212 6 C 0.050 3.950 7 C 0.086 3.914 8 N -0.488 5.488 9 C 0.020 3.980 10 C 0.017 3.983 11 C -0.529 4.529 12 H 0.064 0.936 13 C 0.016 3.984 14 N -0.922 5.922 15 Si 0.955 3.045 16 H -0.266 1.266 17 H -0.290 1.290 18 H -0.272 1.272 19 C 0.012 3.988 20 O -0.168 6.168 21 H 0.194 0.806 22 H 0.175 0.825 23 H 0.103 0.897 24 H 0.100 0.900 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.026 0.974 28 H 0.262 0.738 29 H 0.073 0.927 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.331 10.102 -4.150 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C 0.002 3.998 3 C -0.051 4.051 4 C -0.114 4.114 5 C -0.232 4.232 6 C -0.004 4.004 7 C -0.041 4.041 8 N -0.211 5.211 9 C -0.109 4.109 10 C -0.003 4.003 11 C -0.567 4.567 12 H 0.082 0.918 13 C -0.183 4.183 14 N -0.561 5.561 15 Si 0.781 3.219 16 H -0.191 1.191 17 H -0.215 1.215 18 H -0.197 1.197 19 C -0.116 4.116 20 O -0.063 6.063 21 H 0.211 0.789 22 H 0.192 0.808 23 H 0.121 0.879 24 H 0.118 0.882 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.800 9.555 -4.068 13.612 hybrid contribution 1.945 0.192 0.115 1.958 sum -6.856 9.748 -3.953 12.556 Atomic orbital electron populations 1.81320 1.11324 1.09176 1.08177 1.23573 0.89626 0.93148 0.93439 1.16536 0.84060 1.05571 0.98977 1.22264 0.91174 0.98997 0.98999 1.21896 0.99195 1.03172 0.98910 1.22889 0.81835 0.97466 0.98211 1.21372 0.91214 0.93141 0.98418 1.68825 1.28059 1.15125 1.09103 1.23917 0.90972 1.00391 0.95646 1.20046 0.93846 0.93800 0.92562 1.21358 0.91776 1.46404 0.97144 0.91775 1.25796 1.02998 0.94360 0.95167 1.70088 1.37129 1.46834 1.02057 0.85659 0.80236 0.78994 0.77045 1.19072 1.21534 1.19673 1.23890 0.92073 0.98390 0.97211 1.84030 1.16909 1.56535 1.48823 0.78925 0.80756 0.87868 0.88215 0.91481 0.93471 0.95610 0.92948 0.90874 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -11.62 18.54 19.01 0.35 -11.27 16 2 C 0.32 7.82 15.89 88.34 1.40 9.22 16 3 C 0.00 0.02 7.08 23.12 0.16 0.18 16 4 C -0.09 -1.78 10.84 22.42 0.24 -1.54 16 5 C -0.21 -4.68 10.77 22.08 0.24 -4.44 16 6 C 0.05 1.29 6.90 24.95 0.17 1.46 16 7 C 0.09 2.30 5.34 85.56 0.46 2.75 16 8 N -0.49 -17.28 6.32 -932.56 -5.89 -23.17 16 9 C 0.02 0.81 7.28 83.57 0.61 1.42 16 10 C 0.02 0.79 3.76 -11.19 -0.04 0.74 16 11 C -0.53 -26.95 8.83 25.60 0.23 -26.72 16 12 H 0.06 3.12 7.81 -2.91 -0.02 3.09 16 13 C 0.02 0.85 5.46 84.65 0.46 1.32 16 14 N -0.92 -52.02 13.26 21.45 0.28 -51.74 16 15 Si 0.96 41.00 29.54 68.60 2.03 43.03 16 16 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 17 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 19 C 0.01 0.46 7.25 83.57 0.61 1.07 16 20 O -0.17 -4.63 10.67 -5.71 -0.06 -4.69 16 21 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 22 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 23 H 0.10 2.40 8.08 -2.39 -0.02 2.39 16 24 H 0.10 2.34 7.30 -2.39 -0.02 2.32 16 25 H 0.07 2.59 7.38 -2.39 -0.02 2.57 16 26 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.03 1.40 8.11 -2.39 -0.02 1.38 16 28 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.08 2.55 7.87 -2.39 -0.02 2.53 16 Total: -1.00 -59.50 276.29 2.40 -57.10 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.15 Total: 5.28 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 4.54 Total: -14.54 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -5.25 Total: -86.18 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.06 Total: -4.69 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -59.50 2.40 -57.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193623.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.154 kcal (2) G-P(sol) polarization free energy of solvation -59.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds