Wall clock time and date at job start Mon Mar 30 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 H 1.09007 * 110.86139 * 297.65968 * 9 7 2 11 11 C 1.54630 * 110.97324 * 61.45585 * 9 7 2 12 12 C 1.51276 * 104.19681 * 142.91488 * 11 9 7 13 13 O 1.21283 * 124.94261 * 163.70898 * 12 11 9 14 14 N 1.34419 * 110.11978 * 343.74905 * 12 11 9 15 15 C 1.46767 * 111.29577 * 359.59228 * 14 12 11 16 16 H 1.08995 * 110.24256 * 136.02145 * 15 14 12 17 17 C 1.50702 * 110.24625 * 258.01773 * 15 14 12 18 18 C 1.38232 * 119.61946 * 241.05541 * 17 15 14 19 19 C 1.38618 * 119.16210 * 179.97438 * 18 17 15 20 20 C 1.38673 * 118.42323 * 359.97438 * 19 18 17 21 21 C 1.38185 * 119.16376 * 359.97438 * 20 19 18 22 22 N 1.31860 * 119.61796 * 60.77284 * 17 15 14 23 23 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 24 24 H 1.09000 * 110.48321 * 261.59146 * 11 9 7 25 25 H 1.08997 * 110.48529 * 24.22951 * 11 9 7 26 26 H 0.96996 * 124.35331 * 179.57841 * 14 12 11 27 27 H 1.08000 * 120.41761 * 359.97438 * 18 17 15 28 28 H 1.07999 * 120.79105 * 179.97438 * 19 18 17 29 29 H 1.07996 * 120.42365 * 179.97438 * 20 19 18 30 30 H 1.07993 * 119.61920 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6471 -2.5986 0.9025 11 6 0.3773 -2.6337 -1.2681 12 6 0.4675 -4.1006 -1.6268 13 8 -0.2846 -4.6784 -2.3827 14 7 1.5020 -4.6707 -0.9851 15 6 2.2167 -3.6950 -0.1537 16 1 2.4435 -4.1250 0.8218 17 6 3.4852 -3.2559 -0.8388 18 6 4.7052 -3.4898 -0.2326 19 6 5.8660 -3.0824 -0.8714 20 6 5.7560 -2.4527 -2.1020 21 6 4.5018 -2.2540 -2.6470 22 7 3.4187 -2.6581 -2.0122 23 1 -0.4850 -0.8401 -0.0004 24 1 -0.6544 -2.3566 -1.0518 25 1 0.7776 -2.0185 -2.0740 26 1 1.7448 -5.6067 -1.0616 27 1 4.7534 -3.9837 0.7267 28 1 6.8332 -3.2515 -0.4215 29 1 6.6393 -2.1217 -2.6278 30 1 4.4077 -1.7647 -3.6051 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709926828.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:52 Heat of formation + Delta-G solvation = -1.573634 kcal Electronic energy + Delta-G solvation = -16318.007505 eV Core-core repulsion = 13691.963923 eV Total energy + Delta-G solvation = -2626.043582 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.30809 -38.82922 -35.93879 -33.23298 -31.94663 -31.11324 -29.54300 -26.82669 -24.57502 -23.03308 -22.34384 -20.18495 -19.71413 -17.36407 -16.69305 -16.15849 -15.53914 -15.32863 -14.49580 -14.27040 -13.81075 -13.67859 -12.97585 -12.87378 -12.65226 -12.34125 -11.65964 -11.50379 -11.45665 -10.81452 -10.32250 -10.11525 -10.02922 -9.42104 -9.30782 -9.03066 -8.67123 -8.50491 -8.37473 -8.34509 -6.37549 -4.11345 1.54076 1.74092 3.38657 3.40452 3.42305 3.60380 3.94335 4.40119 4.48299 4.78078 5.08104 5.18816 5.31533 5.40534 5.51461 5.55572 5.73293 5.87269 6.04459 6.11809 6.34698 6.49620 6.51621 6.66065 7.00513 7.11190 7.36637 7.48328 7.62265 8.04286 8.33417 8.60988 8.80258 8.98403 9.57355 10.99526 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.014570 C = 0.009204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.624639 B = 1921.236061 C = 3041.545672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.026 3.974 3 Si 1.063 2.937 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.578 4.578 8 H 0.053 0.947 9 C 0.043 3.957 10 H 0.040 0.960 11 C -0.140 4.140 12 C 0.526 3.474 13 O -0.564 6.564 14 N -0.727 5.727 15 C 0.182 3.818 16 H 0.086 0.914 17 C 0.165 3.835 18 C -0.177 4.177 19 C -0.081 4.081 20 C -0.190 4.190 21 C 0.100 3.900 22 N -0.440 5.440 23 H 0.272 0.728 24 H 0.081 0.919 25 H 0.107 0.893 26 H 0.395 0.605 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.759 -5.303 0.097 11.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.892 3.108 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.617 4.617 8 H 0.071 0.929 9 C 0.024 3.976 10 H 0.058 0.942 11 C -0.180 4.180 12 C 0.316 3.684 13 O -0.443 6.443 14 N -0.381 5.381 15 C 0.076 3.924 16 H 0.104 0.896 17 C 0.026 3.974 18 C -0.197 4.197 19 C -0.107 4.107 20 C -0.210 4.210 21 C -0.058 4.058 22 N -0.148 5.148 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.126 0.874 26 H 0.232 0.768 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.281 -3.687 -0.659 10.008 hybrid contribution 1.464 -2.078 0.378 2.570 sum 10.745 -5.764 -0.282 12.197 Atomic orbital electron populations 1.70811 1.06805 1.31058 1.45681 1.25650 0.96425 1.02286 0.93549 0.83607 0.75002 0.75749 0.76441 1.21523 1.21582 1.20750 1.21664 0.93748 0.90200 1.56048 0.92863 1.19808 0.91980 0.92575 0.93240 0.94246 1.22628 1.02091 0.90890 1.02411 1.21573 0.78444 0.91002 0.77396 1.90627 1.45605 1.70728 1.37381 1.46276 1.31479 1.11283 1.49017 1.20727 0.89724 0.91060 0.90920 0.89570 1.21226 0.93895 0.91508 0.90811 1.21878 0.93205 1.03353 1.01313 1.21380 0.98314 0.96308 0.94730 1.22006 0.99130 1.02533 0.97355 1.22728 0.87901 0.96105 0.99108 1.67512 1.31737 1.06965 1.08589 0.91572 0.90080 0.87440 0.76842 0.85485 0.85657 0.85690 0.83520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.83 13.43 55.43 0.74 -25.08 16 2 C 0.03 0.70 5.34 -17.82 -0.10 0.60 16 3 Si 1.06 24.36 29.90 -169.99 -5.08 19.28 16 4 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.58 -14.65 7.26 -34.44 -0.25 -14.90 16 8 H 0.05 1.36 6.14 -52.49 -0.32 1.04 16 9 C 0.04 0.99 2.55 -90.14 -0.23 0.76 16 10 H 0.04 0.94 8.10 -51.93 -0.42 0.52 16 11 C -0.14 -3.27 4.93 -26.74 -0.13 -3.40 16 12 C 0.53 11.71 8.43 -10.86 -0.09 11.62 16 13 O -0.56 -14.01 18.03 5.55 0.10 -13.91 16 14 N -0.73 -13.49 5.86 -53.88 -0.32 -13.80 16 15 C 0.18 3.43 3.77 -68.16 -0.26 3.17 16 16 H 0.09 1.39 7.91 -51.93 -0.41 0.98 16 17 C 0.16 3.07 3.82 -82.58 -0.32 2.76 16 18 C -0.18 -2.75 9.72 -39.44 -0.38 -3.13 16 19 C -0.08 -1.12 10.18 -39.28 -0.40 -1.52 16 20 C -0.19 -2.68 10.11 -39.44 -0.40 -3.08 16 21 C 0.10 1.68 11.18 -17.55 -0.20 1.48 16 22 N -0.44 -8.80 8.74 -9.47 -0.08 -8.89 16 23 H 0.27 7.63 5.50 -40.82 -0.22 7.41 16 24 H 0.08 1.95 6.88 -51.93 -0.36 1.60 16 25 H 0.11 2.75 7.77 -51.93 -0.40 2.34 16 26 H 0.39 6.22 8.96 -40.82 -0.37 5.85 16 27 H 0.13 1.63 7.97 -52.49 -0.42 1.22 16 28 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 257.96 15.07 3.89 3.89 Total: -1.00 -31.31 257.96 -6.49 -37.80 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -2.99 Total: 6.36 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -2.75 Total: -5.63 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.35 Total: -47.77 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.10 Total: -13.91 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.08 Total: 19.28 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.31 -6.49 -37.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709926828.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.226 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds