Wall clock time and date at job start Mon Mar 30 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 H 1.09007 * 110.86139 * 297.65968 * 9 7 2 11 11 C 1.54630 * 110.97324 * 61.45585 * 9 7 2 12 12 C 1.51276 * 104.19681 * 142.91488 * 11 9 7 13 13 O 1.21283 * 124.94261 * 163.70898 * 12 11 9 14 14 N 1.34419 * 110.11978 * 343.74905 * 12 11 9 15 15 C 1.46767 * 111.29577 * 359.59228 * 14 12 11 16 16 H 1.08995 * 110.24256 * 136.02145 * 15 14 12 17 17 C 1.50702 * 110.24625 * 258.01773 * 15 14 12 18 18 C 1.38232 * 119.61946 * 241.05541 * 17 15 14 19 19 C 1.38618 * 119.16210 * 179.97438 * 18 17 15 20 20 C 1.38673 * 118.42323 * 359.97438 * 19 18 17 21 21 C 1.38185 * 119.16376 * 359.97438 * 20 19 18 22 22 N 1.31860 * 119.61796 * 60.77284 * 17 15 14 23 23 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 24 24 H 1.09000 * 110.48321 * 261.59146 * 11 9 7 25 25 H 1.08997 * 110.48529 * 24.22951 * 11 9 7 26 26 H 0.96996 * 124.35331 * 179.57841 * 14 12 11 27 27 H 1.08000 * 120.41761 * 359.97438 * 18 17 15 28 28 H 1.07999 * 120.79105 * 179.97438 * 19 18 17 29 29 H 1.07996 * 120.42365 * 179.97438 * 20 19 18 30 30 H 1.07993 * 119.61920 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6471 -2.5986 0.9025 11 6 0.3773 -2.6337 -1.2681 12 6 0.4675 -4.1006 -1.6268 13 8 -0.2846 -4.6784 -2.3827 14 7 1.5020 -4.6707 -0.9851 15 6 2.2167 -3.6950 -0.1537 16 1 2.4435 -4.1250 0.8218 17 6 3.4852 -3.2559 -0.8388 18 6 4.7052 -3.4898 -0.2326 19 6 5.8660 -3.0824 -0.8714 20 6 5.7560 -2.4527 -2.1020 21 6 4.5018 -2.2540 -2.6470 22 7 3.4187 -2.6581 -2.0122 23 1 -0.4850 -0.8401 -0.0004 24 1 -0.6544 -2.3566 -1.0518 25 1 0.7776 -2.0185 -2.0740 26 1 1.7448 -5.6067 -1.0616 27 1 4.7534 -3.9837 0.7267 28 1 6.8332 -3.2515 -0.4215 29 1 6.6393 -2.1217 -2.6278 30 1 4.4077 -1.7647 -3.6051 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709926828.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:52 Heat of formation + Delta-G solvation = -23.659559 kcal Electronic energy + Delta-G solvation = -16318.965223 eV Core-core repulsion = 13691.963923 eV Total energy + Delta-G solvation = -2627.001300 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.80555 -40.32860 -37.69839 -35.14847 -33.14306 -32.43926 -31.38725 -28.47382 -26.41882 -24.23407 -23.81279 -21.86158 -21.46528 -19.07385 -18.28898 -17.68064 -16.91267 -16.70465 -16.04484 -15.90947 -15.47999 -15.46183 -14.59860 -14.27710 -14.05029 -13.73420 -13.49247 -13.39341 -12.64088 -12.61176 -12.19108 -11.95686 -11.80699 -11.16193 -10.64096 -10.54775 -10.48504 -10.33698 -9.85342 -9.73419 -8.46515 -6.19079 0.32927 0.60044 1.54809 1.57803 1.61555 1.79244 2.42546 2.61229 3.09767 3.28660 3.49101 3.76736 3.90309 4.06342 4.18102 4.32785 4.42286 4.43348 4.56902 4.78933 4.83603 4.96724 5.11690 5.34053 5.38679 5.44318 5.84022 5.94726 5.97901 6.12175 6.29470 6.72292 7.27843 7.38021 7.56103 8.91355 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.014570 C = 0.009204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.624639 B = 1921.236061 C = 3041.545672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.026 4.026 3 Si 1.102 2.898 4 H -0.280 1.280 5 H -0.269 1.269 6 H -0.291 1.291 7 C -0.563 4.563 8 H 0.054 0.946 9 C 0.035 3.965 10 H 0.027 0.973 11 C -0.129 4.129 12 C 0.528 3.472 13 O -0.594 6.594 14 N -0.703 5.703 15 C 0.187 3.813 16 H 0.121 0.879 17 C 0.130 3.870 18 C -0.174 4.174 19 C -0.078 4.078 20 C -0.177 4.177 21 C 0.072 3.928 22 N -0.487 5.487 23 H 0.262 0.738 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.413 0.587 27 H 0.156 0.844 28 H 0.167 0.833 29 H 0.161 0.839 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.035 -5.961 0.899 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.224 4.224 3 Si 0.927 3.073 4 H -0.206 1.206 5 H -0.194 1.194 6 H -0.217 1.217 7 C -0.601 4.601 8 H 0.073 0.927 9 C 0.016 3.984 10 H 0.045 0.955 11 C -0.170 4.170 12 C 0.316 3.684 13 O -0.476 6.476 14 N -0.356 5.356 15 C 0.082 3.918 16 H 0.139 0.861 17 C -0.009 4.009 18 C -0.194 4.194 19 C -0.104 4.104 20 C -0.197 4.197 21 C -0.086 4.086 22 N -0.196 5.196 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.253 0.747 27 H 0.173 0.827 28 H 0.185 0.815 29 H 0.179 0.821 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.610 -4.379 0.166 13.349 hybrid contribution 0.552 -1.906 0.101 1.987 sum 13.161 -6.285 0.267 14.587 Atomic orbital electron populations 1.70904 1.07874 1.30547 1.48751 1.26806 0.96498 1.05626 0.93514 0.83092 0.74245 0.72547 0.77465 1.20644 1.19425 1.21737 1.21862 0.93821 0.90883 1.53557 0.92742 1.19750 0.92672 0.93919 0.92098 0.95472 1.22359 1.00980 0.91711 1.01957 1.21277 0.79156 0.90440 0.77487 1.90605 1.47070 1.71043 1.38924 1.46027 1.29906 1.12194 1.47518 1.20743 0.89141 0.89320 0.92625 0.86111 1.21188 0.94621 0.93667 0.91376 1.22195 0.92469 1.02581 1.02181 1.21897 0.99503 0.94728 0.94235 1.22398 0.99089 1.00742 0.97440 1.23060 0.88663 0.96987 0.99876 1.67374 1.33907 1.08475 1.09860 0.92660 0.91941 0.90104 0.74686 0.82665 0.81521 0.82132 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.26 13.43 21.45 0.29 -54.97 16 2 C -0.03 -1.38 5.34 84.66 0.45 -0.93 16 3 Si 1.10 48.95 29.90 68.60 2.05 51.00 16 4 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 7 C -0.56 -28.46 7.26 25.60 0.19 -28.28 16 8 H 0.05 2.72 6.14 -2.91 -0.02 2.70 16 9 C 0.03 1.61 2.55 -10.48 -0.03 1.58 16 10 H 0.03 1.32 8.10 -2.38 -0.02 1.30 16 11 C -0.13 -6.29 4.93 30.59 0.15 -6.13 16 12 C 0.53 23.80 8.43 87.90 0.74 24.54 16 13 O -0.59 -30.04 18.03 -3.04 -0.05 -30.09 16 14 N -0.70 -25.30 5.86 -442.97 -2.60 -27.90 16 15 C 0.19 6.76 3.77 44.70 0.17 6.93 16 16 H 0.12 3.52 7.91 -2.39 -0.02 3.50 16 17 C 0.13 4.58 3.82 42.55 0.16 4.74 16 18 C -0.17 -4.70 9.72 22.36 0.22 -4.48 16 19 C -0.08 -1.76 10.18 22.46 0.23 -1.53 16 20 C -0.18 -4.29 10.11 22.36 0.23 -4.06 16 21 C 0.07 2.29 11.18 84.67 0.95 3.24 16 22 N -0.49 -19.07 8.74 -183.88 -1.61 -20.68 16 23 H 0.26 15.39 5.50 -92.70 -0.51 14.88 16 24 H 0.06 3.20 6.88 -2.39 -0.02 3.19 16 25 H 0.08 4.35 7.77 -2.39 -0.02 4.33 16 26 H 0.41 12.20 8.96 -92.71 -0.83 11.36 16 27 H 0.16 3.20 7.97 -2.91 -0.02 3.17 16 28 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 29 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 30 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -69.44 257.96 2.13 -67.31 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.60 Total: 19.72 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 3.45 Total: -4.39 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -3.92 Total: -103.55 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.05 Total: -30.09 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.05 Total: 51.00 kcal Total: -69.44 2.13 -67.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709926828.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.652 kcal (2) G-P(sol) polarization free energy of solvation -69.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds