Wall clock time and date at job start Mon Mar 30 2020 02:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99953 * 2 1 4 4 H 1.48502 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47117 * 299.99775 * 3 2 1 6 6 H 1.48497 * 109.47363 * 59.99642 * 3 2 1 7 7 C 1.37877 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99618 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99848 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.85470 * 56.21761 * 9 7 2 11 11 C 1.54618 * 111.00427 * 292.39617 * 9 7 2 12 12 C 1.51284 * 104.19819 * 266.66663 * 11 9 7 13 13 O 1.21284 * 124.94089 * 163.77039 * 12 11 9 14 14 N 1.34413 * 110.11346 * 343.74895 * 12 11 9 15 15 C 1.46766 * 111.30232 * 359.58991 * 14 12 11 16 16 H 1.08998 * 110.24767 * 257.92806 * 15 14 12 17 17 C 1.50701 * 110.24251 * 136.01829 * 15 14 12 18 18 C 1.38225 * 119.62395 * 6.45310 * 17 15 14 19 19 C 1.38617 * 119.16448 * 179.97438 * 18 17 15 20 20 C 1.38676 * 118.42147 * 0.02562 * 19 18 17 21 21 C 1.38179 * 119.15934 * 359.97438 * 20 19 18 22 22 N 1.31854 * 119.61393 * 186.17994 * 17 15 14 23 23 H 0.97004 * 119.99717 * 359.97438 * 1 2 3 24 24 H 1.09008 * 110.48943 * 25.34509 * 11 9 7 25 25 H 1.08998 * 110.49021 * 147.98615 * 11 9 7 26 26 H 0.97003 * 124.34694 * 179.85661 * 14 12 11 27 27 H 1.08006 * 120.41650 * 0.02562 * 18 17 15 28 28 H 1.08004 * 120.79304 * 179.97438 * 19 18 17 29 29 H 1.08004 * 120.41765 * 179.97438 * 20 19 18 30 30 H 1.08007 * 119.61430 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 1 0.5661 -2.5525 -0.8446 11 6 0.4981 -2.7032 1.3367 12 6 1.4602 -3.5035 2.1867 13 8 1.3786 -3.6373 3.3894 14 7 2.4184 -4.0449 1.4151 15 6 2.2238 -3.6991 0.0021 16 1 1.7870 -4.5407 -0.5355 17 6 3.5370 -3.3062 -0.6242 18 6 4.7068 -3.4417 0.0996 19 6 5.9094 -3.0779 -0.4859 20 6 5.8905 -2.5886 -1.7833 21 6 4.6821 -2.4812 -2.4448 22 7 3.5574 -2.8421 -1.8582 23 1 -0.4850 0.8401 0.0004 24 1 0.2840 -1.7422 1.8048 25 1 -0.4230 -3.2627 1.1736 26 1 3.1430 -4.5968 1.7488 27 1 4.6842 -3.8271 1.1083 28 1 6.8390 -3.1725 0.0557 29 1 6.8086 -2.2951 -2.2706 30 1 4.6587 -2.1006 -3.4553 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709926830.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:54 Heat of formation + Delta-G solvation = -16.255305 kcal Electronic energy + Delta-G solvation = -16219.344553 eV Core-core repulsion = 13592.664326 eV Total energy + Delta-G solvation = -2626.680227 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.72930 -40.32901 -37.55983 -34.86123 -33.32078 -32.30016 -31.67595 -28.25250 -26.90502 -24.31642 -23.58570 -21.69966 -21.25996 -18.81203 -18.51731 -17.25354 -17.01146 -16.57742 -16.30770 -16.25684 -15.42804 -14.97156 -14.49897 -14.42481 -14.03346 -13.73753 -13.55473 -13.00718 -12.87154 -12.72414 -12.47627 -12.24918 -11.61712 -11.08023 -10.90331 -10.62788 -10.42027 -10.29955 -9.95125 -9.61899 -8.12921 -6.17919 0.35546 0.57068 1.35814 1.39529 1.47054 1.68934 2.41458 2.43542 3.04778 3.20276 3.49627 3.76600 4.00932 4.13406 4.30661 4.38521 4.41288 4.54832 4.69220 4.81711 4.86419 4.94495 5.30998 5.38090 5.44561 5.68314 5.80374 5.93192 5.98761 6.09059 6.27133 6.84946 7.29285 7.39886 7.47882 8.96304 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.014297 C = 0.009220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.237763 B = 1958.042943 C = 3036.242236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.019 3.981 3 Si 0.938 3.062 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.286 1.286 7 C -0.493 4.493 8 H 0.051 0.949 9 C 0.060 3.940 10 H 0.042 0.958 11 C -0.139 4.139 12 C 0.531 3.469 13 O -0.592 6.592 14 N -0.705 5.705 15 C 0.183 3.817 16 H 0.102 0.898 17 C 0.143 3.857 18 C -0.190 4.190 19 C -0.077 4.077 20 C -0.184 4.184 21 C 0.085 3.915 22 N -0.490 5.490 23 H 0.260 0.740 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.412 0.588 27 H 0.137 0.863 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.769 -6.672 -4.281 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.180 4.180 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.212 1.212 7 C -0.531 4.531 8 H 0.069 0.931 9 C 0.041 3.959 10 H 0.060 0.940 11 C -0.180 4.180 12 C 0.320 3.680 13 O -0.474 6.474 14 N -0.360 5.360 15 C 0.077 3.923 16 H 0.119 0.881 17 C 0.006 3.994 18 C -0.210 4.210 19 C -0.103 4.103 20 C -0.203 4.203 21 C -0.072 4.072 22 N -0.199 5.199 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.253 0.747 27 H 0.155 0.845 28 H 0.178 0.822 29 H 0.181 0.819 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 9.704 -6.487 -4.181 12.399 hybrid contribution 1.132 0.943 0.642 1.607 sum 10.836 -5.545 -3.539 12.676 Atomic orbital electron populations 1.70026 1.06684 1.27066 1.51495 1.25522 0.95494 1.01622 0.95409 0.85803 0.79005 0.81222 0.77430 1.19939 1.20558 1.21221 1.21134 0.92337 0.90541 1.49126 0.93085 1.19501 0.92242 0.91417 0.92770 0.93985 1.22358 0.97553 0.99486 0.98616 1.21206 0.82839 0.77563 0.86354 1.90612 1.77122 1.64427 1.15253 1.46055 1.29433 1.52232 1.08277 1.20571 0.92905 0.98824 0.79962 0.88094 1.20971 0.94459 0.93445 0.90574 1.21999 0.93490 1.04014 1.01502 1.21870 0.98540 0.94736 0.95168 1.22414 1.00277 1.01627 0.96030 1.23176 0.87770 0.95510 1.00759 1.67298 1.31306 1.09899 1.11415 0.93047 0.90552 0.89212 0.74744 0.84536 0.82160 0.81901 0.81223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.15 12.39 21.45 0.27 -50.88 16 2 C 0.02 1.00 5.16 84.65 0.44 1.44 16 3 Si 0.94 43.70 29.54 68.60 2.03 45.72 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.49 -25.42 7.53 25.60 0.19 -25.23 16 8 H 0.05 2.67 6.05 -2.91 -0.02 2.66 16 9 C 0.06 2.77 2.76 -10.49 -0.03 2.74 16 10 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 11 C -0.14 -6.38 6.09 30.58 0.19 -6.20 16 12 C 0.53 22.97 8.43 87.90 0.74 23.71 16 13 O -0.59 -28.81 18.03 -3.04 -0.05 -28.87 16 14 N -0.70 -24.80 5.19 -442.97 -2.30 -27.10 16 15 C 0.18 6.78 3.90 44.70 0.17 6.95 16 16 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 17 C 0.14 5.14 4.08 42.55 0.17 5.32 16 18 C -0.19 -5.72 9.34 22.36 0.21 -5.51 16 19 C -0.08 -1.91 10.18 22.46 0.23 -1.68 16 20 C -0.18 -4.43 10.11 22.36 0.23 -4.21 16 21 C 0.09 2.53 11.18 84.67 0.95 3.48 16 22 N -0.49 -18.20 9.47 -183.89 -1.74 -19.95 16 23 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 24 H 0.08 4.03 7.02 -2.38 -0.02 4.02 16 25 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 26 H 0.41 11.89 7.38 -92.71 -0.68 11.20 16 27 H 0.14 3.65 6.16 -2.91 -0.02 3.63 16 28 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 29 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 30 H 0.17 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -65.70 258.22 2.17 -63.53 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.49 Total: 16.73 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 3.49 Total: 0.81 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -3.78 Total: -97.93 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.05 Total: -28.87 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -65.70 2.17 -63.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709926830.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.276 kcal (2) G-P(sol) polarization free energy of solvation -65.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds