Wall clock time and date at job start Mon Mar 30 2020 03:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00035 * 2 1 4 4 H 1.48505 * 109.46878 * 269.99903 * 3 2 1 5 5 H 1.48499 * 109.47343 * 29.99926 * 3 2 1 6 6 H 1.48497 * 109.46944 * 150.00564 * 3 2 1 7 7 C 1.37879 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99700 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99964 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.85744 * 59.30410 * 9 7 2 11 11 C 1.54629 * 111.00132 * 295.48834 * 9 7 2 12 12 C 1.51279 * 104.19679 * 217.06972 * 11 9 7 13 13 O 1.21280 * 124.94332 * 196.21719 * 12 11 9 14 14 N 1.34420 * 110.11334 * 16.25416 * 12 11 9 15 15 C 1.46758 * 111.30351 * 0.40485 * 14 12 11 16 16 H 1.09003 * 110.32468 * 223.94561 * 15 14 12 17 17 C 1.50700 * 110.24341 * 101.98407 * 15 14 12 18 18 C 1.38651 * 120.79192 * 323.67062 * 17 15 14 19 19 C 1.38206 * 119.16521 * 179.75312 * 18 17 15 20 20 N 1.31875 * 120.76137 * 0.54028 * 19 18 17 21 21 C 1.31873 * 121.72667 * 359.73212 * 20 19 18 22 22 C 1.38203 * 120.76233 * 359.97438 * 21 20 19 23 23 H 0.97008 * 119.99505 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.49023 * 335.75107 * 11 9 7 25 25 H 1.09002 * 110.48233 * 98.39242 * 11 9 7 26 26 H 0.97003 * 124.34453 * 180.43029 * 14 12 11 27 27 H 1.07998 * 120.41478 * 0.02562 * 18 17 15 28 28 H 1.07999 * 119.61944 * 180.24945 * 19 18 17 29 29 H 1.07995 * 119.61786 * 180.02562 * 21 20 19 30 30 H 1.08004 * 120.41672 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6063 -2.5750 -0.8762 11 6 0.4364 -2.6687 1.3028 12 6 0.5421 -4.1447 1.6170 13 8 -0.1740 -4.7431 2.3916 14 7 1.5456 -4.6965 0.9132 15 6 2.2220 -3.6981 0.0766 16 1 2.4046 -4.1003 -0.9199 17 6 3.5208 -3.2771 0.7144 18 6 3.6300 -3.1595 2.0916 19 6 4.8387 -2.7759 2.6411 20 7 5.8765 -2.5129 1.8712 21 6 5.8076 -2.6089 0.5577 22 6 4.6336 -2.9927 -0.0623 23 1 -0.4850 0.8402 -0.0004 24 1 0.8737 -2.0755 2.1059 25 1 -0.6040 -2.3865 1.1418 26 1 1.7910 -5.6341 0.9528 27 1 2.7824 -3.3694 2.7272 28 1 4.9330 -2.6859 3.7132 29 1 6.6788 -2.3858 -0.0402 30 1 4.5835 -3.0699 -1.1385 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709929847.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:02 Heat of formation + Delta-G solvation = -22.877771 kcal Electronic energy + Delta-G solvation = -16253.769722 eV Core-core repulsion = 13626.802324 eV Total energy + Delta-G solvation = -2626.967399 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.82236 -40.32710 -37.75185 -34.88065 -33.30849 -31.94309 -31.72788 -28.55287 -26.79701 -24.20210 -23.76132 -21.74782 -21.22674 -18.85528 -18.25704 -17.51650 -16.96538 -16.50125 -16.39091 -16.02984 -15.49329 -14.95526 -14.54935 -14.35730 -14.27248 -14.11067 -13.73877 -12.97461 -12.81171 -12.66273 -12.35710 -12.17307 -11.53906 -11.36381 -10.81400 -10.52581 -10.40668 -10.17412 -10.01554 -9.87802 -8.15004 -6.21762 0.38775 0.48139 1.41378 1.46586 1.52639 1.61082 2.40600 2.49629 3.03640 3.21005 3.70310 3.74633 3.84365 4.02388 4.26231 4.33821 4.43730 4.52923 4.66964 4.85020 4.87641 5.02468 5.18417 5.41755 5.51041 5.61913 5.82575 5.92967 5.95389 6.04493 6.24374 6.85763 7.16507 7.33284 7.47653 8.94918 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.014381 C = 0.009047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.435295 B = 1946.481498 C = 3094.162174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.075 0.925 9 C 0.053 3.947 10 H 0.037 0.963 11 C -0.125 4.125 12 C 0.519 3.481 13 O -0.590 6.590 14 N -0.707 5.707 15 C 0.173 3.827 16 H 0.118 0.882 17 C -0.015 4.015 18 C -0.165 4.165 19 C 0.084 3.916 20 N -0.515 5.515 21 C 0.086 3.914 22 C -0.162 4.162 23 H 0.261 0.739 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.415 0.585 27 H 0.114 0.886 28 H 0.165 0.835 29 H 0.179 0.821 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 -5.706 -1.736 10.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.093 0.907 9 C 0.034 3.966 10 H 0.055 0.945 11 C -0.166 4.166 12 C 0.308 3.692 13 O -0.472 6.472 14 N -0.361 5.361 15 C 0.068 3.932 16 H 0.136 0.864 17 C -0.024 4.024 18 C -0.185 4.185 19 C -0.072 4.072 20 N -0.225 5.225 21 C -0.071 4.071 22 C -0.182 4.182 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.255 0.745 27 H 0.132 0.868 28 H 0.182 0.818 29 H 0.196 0.804 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.121 -5.528 -0.969 10.710 hybrid contribution -0.826 0.592 -0.151 1.027 sum 8.295 -4.936 -1.119 9.718 Atomic orbital electron populations 1.70052 1.07056 1.27325 1.50929 1.25555 0.95279 1.01799 0.94942 0.85824 0.78663 0.80580 0.78231 1.19867 1.21871 1.19948 1.21358 0.93608 0.89794 1.50278 0.90657 1.19581 0.92001 0.92103 0.92905 0.94524 1.22254 1.02611 0.90178 1.01567 1.21497 0.78745 0.91111 0.77872 1.90629 1.47769 1.70255 1.38575 1.46125 1.32958 1.11925 1.45049 1.20841 0.89380 0.89449 0.93561 0.86406 1.20384 0.94766 0.93565 0.93722 1.21827 0.98817 1.02063 0.95831 1.22866 0.88450 0.95187 1.00702 1.67643 1.32088 1.15472 1.07296 1.23121 0.98237 0.95094 0.90598 1.22169 0.92822 1.00909 1.02285 0.93029 0.90411 0.91159 0.74546 0.86840 0.81764 0.80360 0.82490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.83 12.63 21.45 0.27 -48.56 16 2 C 0.02 1.22 5.35 84.66 0.45 1.67 16 3 Si 0.94 40.92 29.54 68.60 2.03 42.94 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.51 -23.79 7.83 25.60 0.20 -23.59 16 8 H 0.08 3.39 5.22 -2.91 -0.02 3.37 16 9 C 0.05 2.24 2.93 -10.48 -0.03 2.21 16 10 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 11 C -0.13 -5.53 5.18 30.59 0.16 -5.37 16 12 C 0.52 20.95 7.38 87.90 0.65 21.60 16 13 O -0.59 -27.33 18.03 -3.03 -0.05 -27.39 16 14 N -0.71 -22.48 5.36 -442.98 -2.37 -24.85 16 15 C 0.17 5.57 3.72 44.70 0.17 5.73 16 16 H 0.12 3.12 8.08 -2.39 -0.02 3.10 16 17 C -0.02 -0.48 3.29 -19.67 -0.06 -0.54 16 18 C -0.17 -5.49 9.14 22.36 0.20 -5.29 16 19 C 0.08 2.63 11.18 84.68 0.95 3.58 16 20 N -0.52 -16.37 10.36 -195.84 -2.03 -18.40 16 21 C 0.09 2.38 11.18 84.68 0.95 3.33 16 22 C -0.16 -4.52 8.57 22.36 0.19 -4.32 16 23 H 0.26 13.54 8.31 -92.70 -0.77 12.77 16 24 H 0.08 3.64 7.85 -2.39 -0.02 3.62 16 25 H 0.07 3.42 8.08 -2.39 -0.02 3.40 16 26 H 0.41 10.77 8.96 -92.71 -0.83 9.94 16 27 H 0.11 3.96 6.63 -2.91 -0.02 3.94 16 28 H 0.17 4.32 8.06 -2.91 -0.02 4.30 16 29 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 30 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -60.34 258.43 2.00 -58.35 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.34 Total: 18.91 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 3.82 Total: -1.00 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -4.13 Total: -91.81 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Total: -60.34 2.00 -58.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709929847.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.468 kcal (2) G-P(sol) polarization free energy of solvation -60.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds