Wall clock time and date at job start Mon Mar 30 2020 03:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46802 * 202.90661 * 3 2 1 5 5 C 1.37099 * 119.99674 * 263.92456 * 4 3 2 6 6 H 1.08007 * 119.99893 * 199.75505 * 5 4 3 7 7 C 1.38947 * 120.00082 * 19.75277 * 5 4 3 8 8 N 1.31411 * 120.00070 * 21.75065 * 7 5 4 9 9 Si 1.86803 * 119.99981 * 201.74286 * 7 5 4 10 10 H 1.48510 * 109.46631 * 90.00258 * 9 7 5 11 11 H 1.48499 * 109.47358 * 209.99863 * 9 7 5 12 12 H 1.48497 * 109.47242 * 330.00608 * 9 7 5 13 13 C 1.34779 * 120.00479 * 83.92423 * 4 3 2 14 14 O 1.21292 * 120.00235 * 179.97438 * 13 4 3 15 15 C 1.50703 * 119.99796 * 359.97438 * 13 4 3 16 16 C 1.52995 * 109.47071 * 179.97438 * 15 13 4 17 17 C 1.47202 * 115.56131 * 34.31497 * 16 15 13 18 18 N 5.94031 * 103.98868 * 235.07762 * 2 1 3 19 19 C 1.52998 * 117.50065 * 179.97438 * 16 15 13 20 20 C 1.52995 * 60.03337 * 107.48080 * 19 16 15 21 21 H 4.40640 * 5.51372 * 179.97438 * 4 1 2 22 22 H 1.08998 * 109.47150 * 82.90635 * 3 2 1 23 23 H 1.09007 * 109.46843 * 322.90239 * 3 2 1 24 24 H 0.97001 * 120.00286 * 179.97438 * 8 7 5 25 25 H 1.09001 * 109.46889 * 59.99729 * 15 13 4 26 26 H 1.08995 * 109.46802 * 300.00249 * 15 13 4 27 27 H 1.08992 * 117.50547 * 214.98504 * 19 16 15 28 28 H 1.09003 * 117.49448 * 359.97438 * 19 16 15 29 29 H 1.08995 * 117.50157 * 107.49855 * 20 19 16 30 30 H 1.09001 * 117.50118 * 252.52593 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.2731 0.5376 5 6 3.4802 2.2896 -0.3147 6 1 4.1231 3.0867 0.0285 7 6 3.0043 2.2942 -1.6202 8 7 1.9237 1.6128 -1.9280 9 14 3.9007 3.2691 -2.9376 10 1 4.9271 2.4081 -3.5782 11 1 2.9284 3.7264 -3.9627 12 1 4.5592 4.4477 -2.3192 13 6 3.2418 1.4447 1.8701 14 8 3.6460 2.4982 2.3151 15 6 2.8604 0.3277 2.8070 16 6 3.0763 0.7787 4.2529 17 6 2.8132 2.2022 4.5202 18 7 2.6100 3.2998 4.7262 19 6 2.7434 -0.2212 5.3621 20 6 4.2030 0.1072 5.0420 21 1 -1.0502 -0.0003 -0.0003 22 1 3.0094 -0.1261 -1.0198 23 1 3.0097 -0.8189 0.6199 24 1 1.5912 1.6163 -2.8393 25 1 3.4802 -0.5454 2.6027 26 1 1.8115 0.0713 2.6586 27 1 2.3300 0.1749 6.2895 28 1 2.3702 -1.2003 5.0616 29 1 4.7499 0.7196 5.7588 30 1 4.7901 -0.6557 4.5306 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816567717.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:38 Heat of formation + Delta-G solvation = 90.781336 kcal Electronic energy + Delta-G solvation = -15783.197210 eV Core-core repulsion = 13161.158440 eV Total energy + Delta-G solvation = -2622.038770 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.28902 -37.55715 -35.16115 -34.80855 -32.19188 -31.24938 -29.18856 -26.42113 -24.65280 -22.77118 -22.47225 -19.47545 -17.93182 -16.85678 -16.58352 -15.93726 -14.82723 -14.69889 -14.37056 -14.03423 -13.32573 -13.17366 -12.77474 -12.41241 -12.27198 -12.07484 -11.77804 -11.58704 -11.32354 -11.22499 -11.02330 -10.51030 -10.46380 -10.31257 -9.80219 -9.39174 -9.26540 -8.93365 -8.39671 -7.88000 -6.34845 -3.88819 3.11461 3.14528 3.25010 3.29705 3.50766 3.64229 3.88086 4.00680 4.15034 4.17883 4.33465 4.54746 4.92232 5.04073 5.10318 5.31914 5.43683 5.59265 5.69438 5.81241 5.89230 5.92407 6.06845 6.13861 6.29261 6.66949 6.98832 7.55642 8.02870 8.37740 8.40834 8.78098 9.11270 9.32417 9.86408 10.65775 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.029524 B = 0.008337 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.157187 B = 3357.803753 C = 3842.118656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.117 4.117 3 C 0.232 3.768 4 N -0.438 5.438 5 C -0.316 4.316 6 H 0.103 0.897 7 C 0.033 3.967 8 N -0.860 5.860 9 Si 0.920 3.080 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.446 3.554 14 O -0.569 6.569 15 C -0.095 4.095 16 C -0.023 4.023 17 C 0.263 3.737 18 N -0.439 5.439 19 C -0.153 4.153 20 C -0.148 4.148 21 H 0.199 0.801 22 H 0.107 0.893 23 H 0.064 0.936 24 H 0.268 0.732 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 -10.558 6.519 12.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.118 4.118 3 C 0.109 3.891 4 N -0.156 5.156 5 C -0.443 4.443 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.497 5.497 9 Si 0.747 3.253 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.234 3.766 14 O -0.452 6.452 15 C -0.136 4.136 16 C -0.026 4.026 17 C -0.053 4.053 18 N -0.116 5.116 19 C -0.191 4.191 20 C -0.186 4.186 21 H 0.216 0.784 22 H 0.125 0.875 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.118 0.882 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.924 -8.374 6.830 10.845 hybrid contribution 0.002 0.082 -1.208 1.211 sum 0.927 -8.293 5.622 10.061 Atomic orbital electron populations 1.24286 0.95388 1.02987 1.04884 1.23148 0.94348 0.97658 0.96690 1.18235 0.84323 0.85625 1.00957 1.43656 1.55918 1.12153 1.03902 1.19644 1.28385 1.05105 0.91199 0.87917 1.25295 0.94966 0.97986 0.98960 1.70084 1.17806 1.41820 1.20029 0.86023 0.79164 0.79953 0.80195 1.20288 1.21113 1.19443 1.19965 0.84690 0.88931 0.82968 1.90560 1.50793 1.28760 1.75094 1.21226 1.03618 0.98977 0.89762 1.17927 1.06900 0.83786 0.94036 1.26939 0.93342 0.92936 0.92094 1.80995 1.08870 1.11027 1.10750 1.23183 0.98595 0.99239 0.98132 1.23204 0.91329 1.02174 1.01914 0.78416 0.87547 0.91778 0.92145 0.88615 0.88804 0.88118 0.87039 0.88174 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.14 19.25 29.55 0.57 -4.57 16 2 C -0.12 -2.50 10.75 -37.12 -0.40 -2.90 16 3 C 0.23 4.82 4.91 -6.83 -0.03 4.78 16 4 N -0.44 -10.69 2.60 -117.93 -0.31 -10.99 16 5 C -0.32 -8.62 9.28 -14.93 -0.14 -8.76 16 6 H 0.10 3.00 7.42 -52.48 -0.39 2.61 16 7 C 0.03 0.85 4.83 -17.47 -0.08 0.76 16 8 N -0.86 -22.38 9.59 55.50 0.53 -21.85 16 9 Si 0.92 20.53 29.61 -169.99 -5.03 15.49 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 13 C 0.45 10.37 7.38 -10.98 -0.08 10.29 16 14 O -0.57 -15.48 13.22 5.55 0.07 -15.41 16 15 C -0.09 -1.57 4.48 -27.88 -0.13 -1.69 16 16 C -0.02 -0.34 2.26 -157.26 -0.36 -0.70 16 17 C 0.26 5.34 12.04 -20.79 -0.25 5.09 16 18 N -0.44 -10.15 18.34 42.12 0.77 -9.37 16 19 C -0.15 -1.56 9.93 -26.73 -0.27 -1.83 16 20 C -0.15 -1.65 9.86 -26.70 -0.26 -1.91 16 21 H 0.20 3.25 7.80 -54.08 -0.42 2.83 16 22 H 0.11 2.35 6.60 -51.93 -0.34 2.00 16 23 H 0.06 1.04 6.70 -51.92 -0.35 0.69 16 24 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 25 H 0.10 1.24 7.17 -51.93 -0.37 0.86 16 26 H 0.09 1.50 7.49 -51.93 -0.39 1.11 16 27 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.11 1.01 8.05 -51.93 -0.42 0.59 16 LS Contribution 273.63 15.07 4.12 4.12 Total: -1.00 -33.69 273.63 -4.35 -38.04 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.08 Total: 1.41 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.43 Total: -1.44 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 1.00 Total: -42.22 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.07 Total: -15.41 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.69 -4.35 -38.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816567717.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.823 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds