Wall clock time and date at job start Mon Mar 30 2020 03:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46802 * 202.90661 * 3 2 1 5 5 C 1.37099 * 119.99674 * 263.92456 * 4 3 2 6 6 H 1.08007 * 119.99893 * 199.75505 * 5 4 3 7 7 C 1.38947 * 120.00082 * 19.75277 * 5 4 3 8 8 N 1.31411 * 120.00070 * 21.75065 * 7 5 4 9 9 Si 1.86803 * 119.99981 * 201.74286 * 7 5 4 10 10 H 1.48510 * 109.46631 * 90.00258 * 9 7 5 11 11 H 1.48499 * 109.47358 * 209.99863 * 9 7 5 12 12 H 1.48497 * 109.47242 * 330.00608 * 9 7 5 13 13 C 1.34779 * 120.00479 * 83.92423 * 4 3 2 14 14 O 1.21292 * 120.00235 * 179.97438 * 13 4 3 15 15 C 1.50703 * 119.99796 * 359.97438 * 13 4 3 16 16 C 1.52995 * 109.47071 * 179.97438 * 15 13 4 17 17 C 1.47202 * 115.56131 * 34.31497 * 16 15 13 18 18 N 5.94031 * 103.98868 * 235.07762 * 2 1 3 19 19 C 1.52998 * 117.50065 * 179.97438 * 16 15 13 20 20 C 1.52995 * 60.03337 * 107.48080 * 19 16 15 21 21 H 4.40640 * 5.51372 * 179.97438 * 4 1 2 22 22 H 1.08998 * 109.47150 * 82.90635 * 3 2 1 23 23 H 1.09007 * 109.46843 * 322.90239 * 3 2 1 24 24 H 0.97001 * 120.00286 * 179.97438 * 8 7 5 25 25 H 1.09001 * 109.46889 * 59.99729 * 15 13 4 26 26 H 1.08995 * 109.46802 * 300.00249 * 15 13 4 27 27 H 1.08992 * 117.50547 * 214.98504 * 19 16 15 28 28 H 1.09003 * 117.49448 * 359.97438 * 19 16 15 29 29 H 1.08995 * 117.50157 * 107.49855 * 20 19 16 30 30 H 1.09001 * 117.50118 * 252.52593 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.2731 0.5376 5 6 3.4802 2.2896 -0.3147 6 1 4.1231 3.0867 0.0285 7 6 3.0043 2.2942 -1.6202 8 7 1.9237 1.6128 -1.9280 9 14 3.9007 3.2691 -2.9376 10 1 4.9271 2.4081 -3.5782 11 1 2.9284 3.7264 -3.9627 12 1 4.5592 4.4477 -2.3192 13 6 3.2418 1.4447 1.8701 14 8 3.6460 2.4982 2.3151 15 6 2.8604 0.3277 2.8070 16 6 3.0763 0.7787 4.2529 17 6 2.8132 2.2022 4.5202 18 7 2.6100 3.2998 4.7262 19 6 2.7434 -0.2212 5.3621 20 6 4.2030 0.1072 5.0420 21 1 -1.0502 -0.0003 -0.0003 22 1 3.0094 -0.1261 -1.0198 23 1 3.0097 -0.8189 0.6199 24 1 1.5912 1.6163 -2.8393 25 1 3.4802 -0.5454 2.6027 26 1 1.8115 0.0713 2.6586 27 1 2.3300 0.1749 6.2895 28 1 2.3702 -1.2003 5.0616 29 1 4.7499 0.7196 5.7588 30 1 4.7901 -0.6557 4.5306 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816567717.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:38 Heat of formation + Delta-G solvation = 68.858784 kcal Electronic energy + Delta-G solvation = -15784.147843 eV Core-core repulsion = 13161.158440 eV Total energy + Delta-G solvation = -2622.989403 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.83675 -38.91601 -36.94399 -36.35964 -34.03327 -32.97926 -30.57024 -28.10750 -26.43302 -24.10934 -23.26313 -21.16493 -19.66310 -18.42911 -18.10422 -17.59680 -16.42414 -16.12476 -15.98694 -15.55699 -14.79822 -14.62092 -14.31887 -14.07882 -13.87121 -13.59940 -13.41892 -13.12756 -12.84172 -12.59961 -12.43328 -12.22725 -12.17744 -11.44712 -11.15996 -11.07345 -10.83979 -10.55958 -10.20405 -9.78738 -8.31487 -5.92474 1.34612 1.40302 1.50538 1.85162 1.91381 2.07007 2.18569 2.35246 2.42618 3.00385 3.05101 3.06802 3.32935 3.72456 3.93885 4.01201 4.06882 4.43903 4.64317 4.75141 4.84831 4.87841 4.97306 5.02487 5.12179 5.34933 5.47512 5.48492 6.08680 6.46944 6.90669 7.17879 7.20838 7.46337 8.03300 8.66312 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.029524 B = 0.008337 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.157187 B = 3357.803753 C = 3842.118656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.151 4.151 3 C 0.233 3.767 4 N -0.453 5.453 5 C -0.351 4.351 6 H 0.066 0.934 7 C 0.005 3.995 8 N -0.869 5.869 9 Si 0.977 3.023 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.285 1.285 13 C 0.433 3.567 14 O -0.621 6.621 15 C -0.078 4.078 16 C -0.075 4.075 17 C 0.277 3.723 18 N -0.515 5.515 19 C -0.111 4.111 20 C -0.133 4.133 21 H 0.228 0.772 22 H 0.088 0.912 23 H 0.115 0.885 24 H 0.271 0.729 25 H 0.142 0.858 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.150 0.850 29 H 0.096 0.904 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 -13.669 6.873 15.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.153 4.153 3 C 0.111 3.889 4 N -0.171 5.171 5 C -0.478 4.478 6 H 0.084 0.916 7 C -0.199 4.199 8 N -0.506 5.506 9 Si 0.802 3.198 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.211 1.211 13 C 0.224 3.776 14 O -0.508 6.508 15 C -0.118 4.118 16 C -0.079 4.079 17 C -0.037 4.037 18 N -0.194 5.194 19 C -0.149 4.149 20 C -0.171 4.171 21 H 0.245 0.755 22 H 0.106 0.894 23 H 0.132 0.868 24 H 0.081 0.919 25 H 0.160 0.840 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.168 0.832 29 H 0.115 0.885 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.684 -11.530 7.178 13.599 hybrid contribution 0.046 1.045 -1.289 1.660 sum 0.730 -10.484 5.889 12.047 Atomic orbital electron populations 1.25105 0.96386 1.01662 1.03655 1.23495 0.95060 0.98852 0.97858 1.18387 0.84308 0.85328 1.00914 1.43877 1.56194 1.12732 1.04344 1.19431 1.29501 1.06062 0.92851 0.91639 1.25880 0.95324 0.98819 0.99867 1.70165 1.17928 1.42108 1.20351 0.85190 0.78424 0.78402 0.77798 1.18420 1.20504 1.21073 1.21231 0.82896 0.90139 0.83361 1.90535 1.52635 1.31482 1.76100 1.21200 1.04741 0.97438 0.88415 1.18352 1.12581 0.81934 0.95038 1.28112 0.91237 0.94218 0.90150 1.80968 1.11853 1.13432 1.13117 1.23431 0.97411 0.98549 0.95537 1.23448 0.91911 1.01373 1.00334 0.75539 0.89440 0.86757 0.91921 0.83987 0.87990 0.87463 0.83218 0.88514 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.45 19.25 74.32 1.43 -8.02 16 2 C -0.15 -6.21 10.75 31.13 0.33 -5.88 16 3 C 0.23 9.34 4.91 84.58 0.42 9.75 16 4 N -0.45 -22.25 2.60 -645.40 -1.68 -23.93 16 5 C -0.35 -19.80 9.28 84.04 0.78 -19.02 16 6 H 0.07 4.09 7.42 -2.91 -0.02 4.07 16 7 C 0.00 0.26 4.83 84.93 0.41 0.67 16 8 N -0.87 -45.10 9.59 21.66 0.21 -44.89 16 9 Si 0.98 42.70 29.61 68.60 2.03 44.74 16 10 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 13 C 0.43 20.18 7.38 87.66 0.65 20.83 16 14 O -0.62 -35.12 13.22 -3.07 -0.04 -35.17 16 15 C -0.08 -2.33 4.48 29.85 0.13 -2.20 16 16 C -0.07 -2.11 2.26 -53.96 -0.12 -2.23 16 17 C 0.28 11.38 12.04 89.45 1.08 12.46 16 18 N -0.52 -24.88 18.34 20.00 0.37 -24.52 16 19 C -0.11 -1.72 9.93 30.59 0.30 -1.41 16 20 C -0.13 -2.41 9.86 30.62 0.30 -2.11 16 21 H 0.23 6.78 7.80 -4.41 -0.03 6.74 16 22 H 0.09 3.81 6.60 -2.39 -0.02 3.79 16 23 H 0.11 3.30 6.70 -2.38 -0.02 3.28 16 24 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 25 H 0.14 2.90 7.17 -2.39 -0.02 2.89 16 26 H 0.10 2.91 7.49 -2.39 -0.02 2.90 16 27 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.14 1.74 8.05 -2.39 -0.02 1.72 16 Total: -1.00 -79.48 273.63 7.75 -71.73 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.15 Total: 9.20 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 5.71 Total: 2.84 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -1.10 Total: -93.34 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.04 Total: -35.17 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.74 kcal Total: -79.48 7.75 -71.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816567717.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.591 kcal (2) G-P(sol) polarization free energy of solvation -79.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds