Wall clock time and date at job start Mon Mar 30 2020 03:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39875 * 125.45668 * 2 1 4 4 C 1.30242 * 110.08106 * 180.15918 * 3 2 1 5 5 C 1.50698 * 126.10728 * 179.84021 * 4 3 2 6 6 H 1.08998 * 109.47607 * 194.69398 * 5 4 3 7 7 O 1.42902 * 109.47022 * 314.68657 * 5 4 3 8 8 C 1.50702 * 109.47465 * 74.68603 * 5 4 3 9 9 H 1.08002 * 119.99441 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00075 * 180.02562 * 8 5 4 11 11 N 1.31514 * 120.00481 * 359.97438 * 10 8 5 12 12 Si 1.86803 * 119.99886 * 179.73007 * 10 8 5 13 13 H 1.48494 * 109.47225 * 180.27306 * 12 10 8 14 14 H 1.48506 * 109.46866 * 300.27330 * 12 10 8 15 15 H 1.48498 * 109.47306 * 60.26614 * 12 10 8 16 16 C 1.45927 * 107.78393 * 359.57640 * 4 3 2 17 17 C 1.39951 * 134.02679 * 180.28829 * 16 4 3 18 18 C 1.36463 * 119.63221 * 179.97438 * 17 16 4 19 19 C 1.38964 * 120.63316 * 0.02562 * 18 17 16 20 20 C 1.36600 * 120.81160 * 0.02562 * 19 18 17 21 21 C 1.37029 * 125.46003 * 179.67798 * 2 1 3 22 22 H 1.08994 * 109.47490 * 270.31758 * 1 2 3 23 23 H 1.09002 * 109.47079 * 30.32056 * 1 2 3 24 24 H 1.09003 * 109.46622 * 150.31520 * 1 2 3 25 25 H 0.96704 * 113.99972 * 60.00582 * 7 5 4 26 26 H 0.97005 * 119.99656 * 359.72741 * 11 10 8 27 27 H 1.07995 * 120.18322 * 359.97438 * 17 16 4 28 28 H 1.08006 * 119.68518 * 180.02562 * 18 17 16 29 29 H 1.07996 * 119.59978 * 180.02562 * 19 18 17 30 30 H 1.07997 * 120.07335 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2764 1.1394 0.0000 4 6 3.5322 0.7940 -0.0034 5 6 4.7113 1.7325 -0.0079 6 1 5.6139 1.1808 -0.2707 7 8 4.4911 2.7694 -0.9663 8 6 4.8749 2.3405 1.3613 9 1 4.1933 2.0735 2.1554 10 6 5.8944 3.2373 1.6000 11 7 6.7246 3.5620 0.6331 12 14 6.0925 3.9966 3.2952 13 1 7.2507 4.9259 3.2891 14 1 4.8595 4.7446 3.6497 15 1 6.3244 2.9230 4.2946 16 6 3.5936 -0.6639 0.0044 17 6 4.6399 -1.5934 0.0102 18 6 4.3565 -2.9283 0.0175 19 6 3.0398 -3.3726 0.0188 20 6 2.0017 -2.4848 0.0123 21 6 2.2600 -1.1161 0.0063 22 1 -0.3634 0.0057 1.0276 23 1 -0.3633 0.8871 -0.5188 24 1 -0.3633 -0.8928 -0.5090 25 1 3.7028 3.3026 -0.7948 26 1 6.6220 3.1673 -0.2471 27 1 5.6658 -1.2561 0.0088 28 1 5.1633 -3.6463 0.0224 29 1 2.8346 -4.4329 0.0252 30 1 0.9830 -2.8432 0.0129 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535827872.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:35 Heat of formation + Delta-G solvation = 30.513302 kcal Electronic energy + Delta-G solvation = -15774.095146 eV Core-core repulsion = 13149.442958 eV Total energy + Delta-G solvation = -2624.652188 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.79955 -36.94527 -35.98497 -32.92735 -32.18168 -30.11521 -29.38987 -27.74384 -25.27361 -23.09241 -22.31997 -21.46194 -19.34136 -17.33432 -16.82792 -16.49709 -15.14933 -15.02131 -14.87047 -13.88759 -13.79125 -13.72562 -13.08676 -12.87129 -12.73552 -12.45144 -12.11144 -11.62742 -11.21869 -10.85667 -10.78206 -10.28477 -10.22535 -10.11709 -9.76309 -9.43836 -8.51939 -8.33268 -8.19120 -7.40987 -6.39798 -4.24080 1.32904 1.83505 2.82991 3.07981 3.43194 3.44656 3.63730 4.13769 4.50209 4.78498 4.86128 5.08925 5.22575 5.31216 5.33257 5.47060 5.54576 5.61438 5.67772 5.98636 6.05498 6.12753 6.27972 6.62533 6.80945 6.97951 7.11008 7.30480 7.46078 7.84028 8.26907 8.33271 8.80009 8.99421 9.58614 10.99395 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.028583 B = 0.007973 C = 0.007266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.376895 B = 3511.159024 C = 3852.517616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.424 5.424 3 N -0.260 5.260 4 C 0.122 3.878 5 C 0.286 3.714 6 H 0.073 0.927 7 O -0.574 6.574 8 C -0.636 4.636 9 H 0.051 0.949 10 C 0.038 3.962 11 N -0.888 5.888 12 Si 1.069 2.931 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.287 1.287 16 C -0.171 4.171 17 C -0.026 4.026 18 C -0.175 4.175 19 C -0.075 4.075 20 C -0.152 4.152 21 C 0.124 3.876 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.363 0.637 26 H 0.284 0.716 27 H 0.128 0.872 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.880 -11.348 -0.965 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.211 5.211 3 N -0.072 5.072 4 C -0.057 4.057 5 C 0.227 3.773 6 H 0.091 0.909 7 O -0.378 6.378 8 C -0.675 4.675 9 H 0.070 0.930 10 C -0.171 4.171 11 N -0.522 5.522 12 Si 0.897 3.103 13 H -0.206 1.206 14 H -0.214 1.214 15 H -0.213 1.213 16 C -0.179 4.179 17 C -0.047 4.047 18 C -0.195 4.195 19 C -0.096 4.096 20 C -0.174 4.174 21 C 0.009 3.991 22 H 0.081 0.919 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.209 0.791 26 H 0.096 0.904 27 H 0.146 0.854 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.456 -9.537 -0.383 12.751 hybrid contribution -1.250 -1.686 -0.480 2.153 sum -9.706 -11.222 -0.862 14.862 Atomic orbital electron populations 1.21564 0.75170 1.03437 1.02310 1.48227 1.05432 1.01503 1.65942 1.76621 1.02426 1.07016 1.21141 1.25310 0.94312 0.92378 0.93694 1.18237 0.86455 0.82785 0.89847 0.90940 1.86473 1.49572 1.47664 1.54087 1.22246 1.18513 1.31165 0.95543 0.93033 1.25819 0.91979 0.94423 1.04904 1.70655 1.36325 1.40966 1.04284 0.83559 0.76362 0.76381 0.74009 1.20568 1.21357 1.21339 1.19988 0.92886 0.93484 1.11585 1.20466 0.98311 0.91922 0.93990 1.20560 0.96462 0.95272 1.07227 1.20596 0.92391 0.98751 0.97871 1.19677 0.99443 0.88978 1.09318 1.18871 0.91121 0.89546 0.99567 0.91941 0.89842 0.90551 0.79105 0.90420 0.85402 0.86013 0.85973 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.52 11.40 59.85 0.68 2.20 16 2 N -0.42 -8.01 4.05 -65.47 -0.27 -8.27 16 3 N -0.26 -5.90 12.32 34.84 0.43 -5.47 16 4 C 0.12 2.89 6.23 -80.19 -0.50 2.39 16 5 C 0.29 7.46 2.95 -29.03 -0.09 7.38 16 6 H 0.07 1.93 8.00 -51.93 -0.42 1.52 16 7 O -0.57 -15.01 12.01 -35.23 -0.42 -15.43 16 8 C -0.64 -18.00 8.75 -34.44 -0.30 -18.30 16 9 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 10 C 0.04 1.08 5.40 -17.82 -0.10 0.98 16 11 N -0.89 -26.64 13.52 55.43 0.75 -25.89 16 12 Si 1.07 25.12 29.90 -169.99 -5.08 20.03 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 16 C -0.17 -3.59 6.33 -105.20 -0.67 -4.26 16 17 C -0.03 -0.47 10.07 -39.58 -0.40 -0.87 16 18 C -0.18 -2.56 9.97 -39.95 -0.40 -2.95 16 19 C -0.08 -1.01 9.96 -39.90 -0.40 -1.41 16 20 C -0.15 -2.24 9.97 -39.79 -0.40 -2.64 16 21 C 0.12 2.32 6.87 -84.18 -0.58 1.74 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.36 8.87 8.96 45.56 0.41 9.27 16 26 H 0.28 8.62 6.48 -40.82 -0.26 8.35 16 27 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 28 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 268.83 15.07 4.05 4.05 Total: -1.00 -32.98 268.83 -6.11 -39.09 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -2.43 Total: 7.62 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -3.14 Total: -15.74 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.91 Total: -39.63 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.42 Total: -15.43 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.98 -6.11 -39.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535827872.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.607 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds