Wall clock time and date at job start Mon Mar 30 2020 03:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39875 * 125.45668 * 2 1 4 4 C 1.30242 * 110.08106 * 180.15918 * 3 2 1 5 5 C 1.50698 * 126.10728 * 179.84021 * 4 3 2 6 6 H 1.08998 * 109.47607 * 194.69398 * 5 4 3 7 7 O 1.42902 * 109.47022 * 314.68657 * 5 4 3 8 8 C 1.50702 * 109.47465 * 74.68603 * 5 4 3 9 9 H 1.08002 * 119.99441 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00075 * 180.02562 * 8 5 4 11 11 N 1.31514 * 120.00481 * 359.97438 * 10 8 5 12 12 Si 1.86803 * 119.99886 * 179.73007 * 10 8 5 13 13 H 1.48494 * 109.47225 * 180.27306 * 12 10 8 14 14 H 1.48506 * 109.46866 * 300.27330 * 12 10 8 15 15 H 1.48498 * 109.47306 * 60.26614 * 12 10 8 16 16 C 1.45927 * 107.78393 * 359.57640 * 4 3 2 17 17 C 1.39951 * 134.02679 * 180.28829 * 16 4 3 18 18 C 1.36463 * 119.63221 * 179.97438 * 17 16 4 19 19 C 1.38964 * 120.63316 * 0.02562 * 18 17 16 20 20 C 1.36600 * 120.81160 * 0.02562 * 19 18 17 21 21 C 1.37029 * 125.46003 * 179.67798 * 2 1 3 22 22 H 1.08994 * 109.47490 * 270.31758 * 1 2 3 23 23 H 1.09002 * 109.47079 * 30.32056 * 1 2 3 24 24 H 1.09003 * 109.46622 * 150.31520 * 1 2 3 25 25 H 0.96704 * 113.99972 * 60.00582 * 7 5 4 26 26 H 0.97005 * 119.99656 * 359.72741 * 11 10 8 27 27 H 1.07995 * 120.18322 * 359.97438 * 17 16 4 28 28 H 1.08006 * 119.68518 * 180.02562 * 18 17 16 29 29 H 1.07996 * 119.59978 * 180.02562 * 19 18 17 30 30 H 1.07997 * 120.07335 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2764 1.1394 0.0000 4 6 3.5322 0.7940 -0.0034 5 6 4.7113 1.7325 -0.0079 6 1 5.6139 1.1808 -0.2707 7 8 4.4911 2.7694 -0.9663 8 6 4.8749 2.3405 1.3613 9 1 4.1933 2.0735 2.1554 10 6 5.8944 3.2373 1.6000 11 7 6.7246 3.5620 0.6331 12 14 6.0925 3.9966 3.2952 13 1 7.2507 4.9259 3.2891 14 1 4.8595 4.7446 3.6497 15 1 6.3244 2.9230 4.2946 16 6 3.5936 -0.6639 0.0044 17 6 4.6399 -1.5934 0.0102 18 6 4.3565 -2.9283 0.0175 19 6 3.0398 -3.3726 0.0188 20 6 2.0017 -2.4848 0.0123 21 6 2.2600 -1.1161 0.0063 22 1 -0.3634 0.0057 1.0276 23 1 -0.3633 0.8871 -0.5188 24 1 -0.3633 -0.8928 -0.5090 25 1 3.7028 3.3026 -0.7948 26 1 6.6220 3.1673 -0.2471 27 1 5.6658 -1.2561 0.0088 28 1 5.1633 -3.6463 0.0224 29 1 2.8346 -4.4329 0.0252 30 1 0.9830 -2.8432 0.0129 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535827872.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:34 Heat of formation + Delta-G solvation = 6.512461 kcal Electronic energy + Delta-G solvation = -15775.135901 eV Core-core repulsion = 13149.442958 eV Total energy + Delta-G solvation = -2625.692943 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.21577 -38.43286 -37.79233 -34.40805 -34.35151 -31.31568 -30.73305 -29.57302 -26.86209 -24.95026 -23.73793 -22.78462 -20.93084 -19.47837 -18.28297 -17.86599 -16.83454 -16.42556 -16.13176 -15.74415 -15.47244 -15.00697 -14.89765 -14.45054 -14.39446 -13.82047 -13.51908 -12.77983 -12.66621 -12.59095 -12.43268 -12.09939 -11.93851 -11.86163 -11.55005 -10.94198 -10.68602 -10.31931 -9.62886 -8.82603 -8.62292 -6.53915 0.00997 0.57494 1.46426 1.52987 1.54452 1.59169 1.79891 2.52695 2.85994 3.08977 3.49708 3.57961 3.76857 3.92116 4.13078 4.27743 4.37827 4.43977 4.47721 4.58598 4.65709 4.88877 4.96836 5.24321 5.38781 5.55231 5.61631 5.69104 5.94770 6.00994 6.21144 6.48117 6.69528 6.94016 7.37560 8.68909 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.028583 B = 0.007973 C = 0.007266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.376895 B = 3511.159024 C = 3852.517616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.422 5.422 3 N -0.285 5.285 4 C 0.085 3.915 5 C 0.289 3.711 6 H 0.052 0.948 7 O -0.583 6.583 8 C -0.643 4.643 9 H 0.037 0.963 10 C -0.008 4.008 11 N -0.910 5.910 12 Si 1.117 2.883 13 H -0.276 1.276 14 H -0.274 1.274 15 H -0.270 1.270 16 C -0.212 4.212 17 C -0.061 4.061 18 C -0.158 4.158 19 C -0.063 4.063 20 C -0.145 4.145 21 C 0.109 3.891 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.114 0.886 25 H 0.367 0.633 26 H 0.269 0.731 27 H 0.116 0.884 28 H 0.156 0.844 29 H 0.174 0.826 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.663 -14.140 -0.125 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.211 5.211 3 N -0.099 5.099 4 C -0.093 4.093 5 C 0.230 3.770 6 H 0.070 0.930 7 O -0.387 6.387 8 C -0.681 4.681 9 H 0.056 0.944 10 C -0.211 4.211 11 N -0.545 5.545 12 Si 0.937 3.063 13 H -0.201 1.201 14 H -0.200 1.200 15 H -0.195 1.195 16 C -0.220 4.220 17 C -0.082 4.082 18 C -0.178 4.178 19 C -0.083 4.083 20 C -0.166 4.166 21 C -0.006 4.006 22 H 0.095 0.905 23 H 0.105 0.895 24 H 0.132 0.868 25 H 0.213 0.787 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.174 0.826 29 H 0.191 0.809 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.256 -12.348 0.446 16.058 hybrid contribution -0.807 -0.993 -0.797 1.508 sum -11.064 -13.341 -0.351 17.335 Atomic orbital electron populations 1.22028 0.71982 1.05565 1.03896 1.48566 1.06987 1.00558 1.64997 1.76400 1.02601 1.09701 1.21176 1.24780 0.93967 0.93817 0.96710 1.17893 0.87488 0.82983 0.88665 0.92993 1.86414 1.49939 1.48190 1.54208 1.22438 1.18139 1.31313 0.96246 0.94430 1.27311 0.91385 0.94598 1.07839 1.70782 1.37453 1.42077 1.04159 0.82961 0.76912 0.76271 0.70107 1.20100 1.19960 1.19507 1.20234 0.95328 0.92415 1.14018 1.20613 0.97418 0.93463 0.96669 1.21026 0.98613 0.94030 1.04082 1.21212 0.91083 1.01092 0.94907 1.20230 1.02072 0.86927 1.07419 1.19335 0.89945 0.91075 1.00275 0.90518 0.89453 0.86783 0.78668 0.92034 0.86614 0.82642 0.80880 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.46 11.40 127.77 1.46 3.91 16 2 N -0.42 -15.60 4.05 -361.04 -1.46 -17.06 16 3 N -0.28 -13.32 12.32 -43.70 -0.54 -13.86 16 4 C 0.08 4.22 6.23 44.79 0.28 4.50 16 5 C 0.29 16.07 2.95 29.10 0.09 16.16 16 6 H 0.05 3.03 8.00 -2.39 -0.02 3.01 16 7 O -0.58 -32.42 12.01 -148.98 -1.79 -34.21 16 8 C -0.64 -38.04 8.75 25.60 0.22 -37.81 16 9 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 10 C -0.01 -0.49 5.40 84.65 0.46 -0.03 16 11 N -0.91 -56.54 13.52 21.45 0.29 -56.25 16 12 Si 1.12 51.13 29.90 68.60 2.05 53.18 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 15 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 16 C -0.21 -9.10 6.33 -20.24 -0.13 -9.23 16 17 C -0.06 -2.22 10.07 22.27 0.22 -2.00 16 18 C -0.16 -4.13 9.97 22.03 0.22 -3.91 16 19 C -0.06 -1.35 9.96 22.06 0.22 -1.13 16 20 C -0.14 -3.63 9.97 22.14 0.22 -3.41 16 21 C 0.11 3.91 6.87 39.21 0.27 4.18 16 22 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.37 19.11 8.96 -74.05 -0.66 18.45 16 26 H 0.27 17.21 6.48 -92.70 -0.60 16.61 16 27 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 28 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -75.94 268.83 2.74 -73.20 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.66 Total: 23.76 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 3.53 Total: -28.77 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -1.71 Total: -87.16 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.79 Total: -34.21 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.05 Total: 53.18 kcal Total: -75.94 2.74 -73.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535827872.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.710 kcal (2) G-P(sol) polarization free energy of solvation -75.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds