Wall clock time and date at job start Mon Mar 30 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.39874 * 125.46531 * 2 1 4 4 C 1.30239 * 110.08716 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.10657 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47545 * 165.02724 * 5 4 3 7 7 O 1.42896 * 109.47189 * 45.02550 * 5 4 3 8 8 C 1.50706 * 109.47259 * 285.02383 * 5 4 3 9 9 H 1.08000 * 119.99302 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00436 * 179.72713 * 8 5 4 11 11 N 1.31515 * 119.99684 * 359.97438 * 10 8 5 12 12 Si 1.86800 * 120.00405 * 180.02562 * 10 8 5 13 13 H 1.48497 * 109.47050 * 59.99579 * 12 10 8 14 14 H 1.48496 * 109.47289 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46492 * 299.99554 * 12 10 8 16 16 C 1.45921 * 107.78494 * 0.26440 * 4 3 2 17 17 C 1.39955 * 134.02778 * 180.50705 * 16 4 3 18 18 C 1.36457 * 119.64118 * 179.60665 * 17 16 4 19 19 C 1.38970 * 120.62172 * 359.65876 * 18 17 16 20 20 C 1.36583 * 120.82509 * 0.02562 * 19 18 17 21 21 C 1.37040 * 125.46021 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47025 * 89.97067 * 1 2 3 23 23 H 1.08994 * 109.47040 * 209.97194 * 1 2 3 24 24 H 1.09003 * 109.47109 * 329.97557 * 1 2 3 25 25 H 0.96701 * 114.00155 * 299.99522 * 7 5 4 26 26 H 0.97004 * 120.00247 * 180.02562 * 11 10 8 27 27 H 1.07996 * 120.17469 * 359.28545 * 17 16 4 28 28 H 1.07999 * 119.69053 * 179.68226 * 18 17 16 29 29 H 1.08012 * 119.58769 * 180.02562 * 19 18 17 30 30 H 1.07999 * 120.08002 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2766 1.1392 0.0000 4 6 3.5324 0.7938 -0.0005 5 6 4.7115 1.7323 -0.0002 6 1 5.6141 1.1816 0.2647 7 8 4.4914 2.7733 0.9536 8 6 4.8749 2.3343 -1.3721 9 1 4.1927 2.0645 -2.1648 10 6 5.8913 3.2339 -1.6137 11 7 6.7180 3.5672 -0.6466 12 14 6.0934 3.9806 -3.3140 13 1 4.8611 4.7255 -3.6771 14 1 7.2509 4.9107 -3.3118 15 1 6.3284 2.8994 -4.3045 16 6 3.5936 -0.6641 -0.0074 17 6 4.6398 -1.5937 -0.0019 18 6 4.3565 -2.9285 -0.0033 19 6 3.0397 -3.3727 -0.0029 20 6 2.0017 -2.4850 -0.0017 21 6 2.2600 -1.1162 -0.0005 22 1 -0.3633 0.0005 -1.0277 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3633 0.8898 0.5142 25 1 3.7031 3.3058 0.7799 26 1 7.4329 4.2004 -0.8164 27 1 5.6657 -1.2563 -0.0019 28 1 5.1633 -3.6466 -0.0043 29 1 2.8346 -4.4331 -0.0036 30 1 0.9829 -2.8435 -0.0010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535827873.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:37 Heat of formation + Delta-G solvation = 36.824671 kcal Electronic energy + Delta-G solvation = -15731.950856 eV Core-core repulsion = 13107.572349 eV Total energy + Delta-G solvation = -2624.378506 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.71585 -36.84671 -35.65675 -32.80040 -32.16881 -30.04768 -29.31176 -27.85530 -25.50387 -23.13207 -22.24867 -21.37315 -19.10543 -17.06708 -16.57323 -16.41205 -15.01413 -14.87843 -14.63186 -14.50385 -13.72171 -13.64182 -13.05543 -12.73569 -12.64251 -12.36927 -11.56685 -11.46729 -11.27731 -10.91205 -10.88152 -10.71369 -10.23228 -10.11470 -9.55524 -9.25623 -8.62330 -8.38312 -8.18240 -7.34822 -6.05141 -4.23497 1.40143 1.90286 2.90555 3.15816 3.30298 3.34447 3.38846 4.20507 4.39586 4.85392 4.92990 5.14548 5.24935 5.30993 5.37799 5.53910 5.61264 5.68047 5.74944 6.13620 6.19391 6.28575 6.39703 6.69602 6.88061 7.09041 7.24004 7.47584 7.57043 7.79547 8.03511 8.38686 8.77196 9.29363 9.51157 10.98605 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.028668 B = 0.007933 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.463171 B = 3528.847801 C = 3873.348627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.425 5.425 3 N -0.262 5.262 4 C 0.118 3.882 5 C 0.302 3.698 6 H 0.080 0.920 7 O -0.556 6.556 8 C -0.561 4.561 9 H 0.057 0.943 10 C 0.081 3.919 11 N -0.858 5.858 12 Si 0.896 3.104 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C -0.170 4.170 17 C -0.025 4.025 18 C -0.177 4.177 19 C -0.076 4.076 20 C -0.153 4.153 21 C 0.124 3.876 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.354 0.646 26 H 0.264 0.736 27 H 0.130 0.870 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.298 -10.913 1.087 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.212 5.212 3 N -0.074 5.074 4 C -0.061 4.061 5 C 0.242 3.758 6 H 0.098 0.902 7 O -0.358 6.358 8 C -0.599 4.599 9 H 0.075 0.925 10 C -0.125 4.125 11 N -0.494 5.494 12 Si 0.722 3.278 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.200 1.200 16 C -0.178 4.178 17 C -0.046 4.046 18 C -0.197 4.197 19 C -0.097 4.097 20 C -0.175 4.175 21 C 0.008 3.992 22 H 0.080 0.920 23 H 0.093 0.907 24 H 0.101 0.899 25 H 0.199 0.801 26 H 0.073 0.927 27 H 0.148 0.852 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.630 -10.037 1.427 13.314 hybrid contribution -0.093 -0.132 -1.318 1.328 sum -8.724 -10.169 0.108 13.398 Atomic orbital electron populations 1.21546 0.75311 1.03380 1.02211 1.48240 1.05385 1.01573 1.66024 1.76634 1.02502 1.06957 1.21335 1.25686 0.94522 0.92576 0.93316 1.18106 0.85833 0.82393 0.89444 0.90210 1.86558 1.48871 1.47125 1.53254 1.21394 1.15234 1.27654 0.95634 0.92460 1.24997 0.94922 0.95710 0.96897 1.70055 1.16007 1.31861 1.31446 0.86621 0.77732 0.79131 0.84275 1.20088 1.21030 1.20036 1.20005 0.92777 0.93597 1.11456 1.20488 0.98435 0.91858 0.93779 1.20553 0.96397 0.95323 1.07412 1.20582 0.92437 0.98684 0.97989 1.19664 0.99366 0.89031 1.09457 1.18883 0.91219 0.89510 0.99576 0.92028 0.90651 0.89876 0.80099 0.92653 0.85241 0.86095 0.86097 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.53 11.40 59.85 0.68 2.21 16 2 N -0.43 -8.02 4.05 -65.46 -0.27 -8.29 16 3 N -0.26 -5.92 12.31 34.83 0.43 -5.49 16 4 C 0.12 2.78 6.23 -80.20 -0.50 2.28 16 5 C 0.30 7.92 3.35 -29.03 -0.10 7.82 16 6 H 0.08 2.17 8.14 -51.93 -0.42 1.75 16 7 O -0.56 -14.87 12.70 -35.23 -0.45 -15.32 16 8 C -0.56 -15.66 8.75 -34.44 -0.30 -15.96 16 9 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 10 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 11 N -0.86 -24.93 12.83 55.43 0.71 -24.22 16 12 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 C -0.17 -3.56 6.33 -105.21 -0.67 -4.22 16 17 C -0.03 -0.45 10.07 -39.58 -0.40 -0.85 16 18 C -0.18 -2.59 9.97 -39.95 -0.40 -2.98 16 19 C -0.08 -1.03 9.96 -39.91 -0.40 -1.42 16 20 C -0.15 -2.27 9.97 -39.79 -0.40 -2.67 16 21 C 0.12 2.31 6.87 -84.17 -0.58 1.73 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.35 8.76 8.95 45.56 0.41 9.17 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 28 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 270.83 15.07 4.08 4.08 Total: -1.00 -32.35 270.83 -6.18 -38.53 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -2.52 Total: 6.31 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -3.15 Total: -11.90 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.87 Total: -38.00 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.45 Total: -15.32 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.35 -6.18 -38.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535827873.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.354 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds