Wall clock time and date at job start Mon Mar 30 2020 03:29:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 N 1.39874 * 125.46531 * 2 1
4 4 C 1.30239 * 110.08716 * 180.02562 * 3 2 1
5 5 C 1.50696 * 126.10657 * 180.02562 * 4 3 2
6 6 H 1.09001 * 109.47545 * 165.02724 * 5 4 3
7 7 O 1.42896 * 109.47189 * 45.02550 * 5 4 3
8 8 C 1.50706 * 109.47259 * 285.02383 * 5 4 3
9 9 H 1.08000 * 119.99302 * 0.02562 * 8 5 4
10 10 C 1.37871 * 120.00436 * 179.72713 * 8 5 4
11 11 N 1.31515 * 119.99684 * 359.97438 * 10 8 5
12 12 Si 1.86800 * 120.00405 * 180.02562 * 10 8 5
13 13 H 1.48497 * 109.47050 * 59.99579 * 12 10 8
14 14 H 1.48496 * 109.47289 * 179.97438 * 12 10 8
15 15 H 1.48504 * 109.46492 * 299.99554 * 12 10 8
16 16 C 1.45921 * 107.78494 * 0.26440 * 4 3 2
17 17 C 1.39955 * 134.02778 * 180.50705 * 16 4 3
18 18 C 1.36457 * 119.64118 * 179.60665 * 17 16 4
19 19 C 1.38970 * 120.62172 * 359.65876 * 18 17 16
20 20 C 1.36583 * 120.82509 * 0.02562 * 19 18 17
21 21 C 1.37040 * 125.46021 * 180.02562 * 2 1 3
22 22 H 1.09000 * 109.47025 * 89.97067 * 1 2 3
23 23 H 1.08994 * 109.47040 * 209.97194 * 1 2 3
24 24 H 1.09003 * 109.47109 * 329.97557 * 1 2 3
25 25 H 0.96701 * 114.00155 * 299.99522 * 7 5 4
26 26 H 0.97004 * 120.00247 * 180.02562 * 11 10 8
27 27 H 1.07996 * 120.17469 * 359.28545 * 17 16 4
28 28 H 1.07999 * 119.69053 * 179.68226 * 18 17 16
29 29 H 1.08012 * 119.58769 * 180.02562 * 19 18 17
30 30 H 1.07999 * 120.08002 * 180.02562 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2766 1.1392 0.0000
4 6 3.5324 0.7938 -0.0005
5 6 4.7115 1.7323 -0.0002
6 1 5.6141 1.1816 0.2647
7 8 4.4914 2.7733 0.9536
8 6 4.8749 2.3343 -1.3721
9 1 4.1927 2.0645 -2.1648
10 6 5.8913 3.2339 -1.6137
11 7 6.7180 3.5672 -0.6466
12 14 6.0934 3.9806 -3.3140
13 1 4.8611 4.7255 -3.6771
14 1 7.2509 4.9107 -3.3118
15 1 6.3284 2.8994 -4.3045
16 6 3.5936 -0.6641 -0.0074
17 6 4.6398 -1.5937 -0.0019
18 6 4.3565 -2.9285 -0.0033
19 6 3.0397 -3.3727 -0.0029
20 6 2.0017 -2.4850 -0.0017
21 6 2.2600 -1.1162 -0.0005
22 1 -0.3633 0.0005 -1.0277
23 1 -0.3633 -0.8902 0.5134
24 1 -0.3633 0.8898 0.5142
25 1 3.7031 3.3058 0.7799
26 1 7.4329 4.2004 -0.8164
27 1 5.6657 -1.2563 -0.0019
28 1 5.1633 -3.6466 -0.0043
29 1 2.8346 -4.4331 -0.0036
30 1 0.9829 -2.8435 -0.0010
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001535827873.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:37
Heat of formation + Delta-G solvation = 36.824671 kcal
Electronic energy + Delta-G solvation = -15731.950856 eV
Core-core repulsion = 13107.572349 eV
Total energy + Delta-G solvation = -2624.378506 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 232.095 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-40.71585 -36.84671 -35.65675 -32.80040 -32.16881 -30.04768 -29.31176 -27.85530
-25.50387 -23.13207 -22.24867 -21.37315 -19.10543 -17.06708 -16.57323 -16.41205
-15.01413 -14.87843 -14.63186 -14.50385 -13.72171 -13.64182 -13.05543 -12.73569
-12.64251 -12.36927 -11.56685 -11.46729 -11.27731 -10.91205 -10.88152 -10.71369
-10.23228 -10.11470 -9.55524 -9.25623 -8.62330 -8.38312 -8.18240 -7.34822
-6.05141 -4.23497 1.40143 1.90286 2.90555 3.15816 3.30298 3.34447
3.38846 4.20507 4.39586 4.85392 4.92990 5.14548 5.24935 5.30993
5.37799 5.53910 5.61264 5.68047 5.74944 6.13620 6.19391 6.28575
6.39703 6.69602 6.88061 7.09041 7.24004 7.47584 7.57043 7.79547
8.03511 8.38686 8.77196 9.29363 9.51157 10.98605
Molecular weight = 232.10amu
Principal moments of inertia in cm(-1)
A = 0.028668 B = 0.007933 C = 0.007227
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 976.463171 B = 3528.847801 C = 3873.348627
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.118 3.882
2 N -0.425 5.425
3 N -0.262 5.262
4 C 0.118 3.882
5 C 0.302 3.698
6 H 0.080 0.920
7 O -0.556 6.556
8 C -0.561 4.561
9 H 0.057 0.943
10 C 0.081 3.919
11 N -0.858 5.858
12 Si 0.896 3.104
13 H -0.275 1.275
14 H -0.285 1.285
15 H -0.275 1.275
16 C -0.170 4.170
17 C -0.025 4.025
18 C -0.177 4.177
19 C -0.076 4.076
20 C -0.153 4.153
21 C 0.124 3.876
22 H 0.061 0.939
23 H 0.075 0.925
24 H 0.083 0.917
25 H 0.354 0.646
26 H 0.264 0.736
27 H 0.130 0.870
28 H 0.121 0.879
29 H 0.121 0.879
30 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.298 -10.913 1.087 13.752
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.024 4.024
2 N -0.212 5.212
3 N -0.074 5.074
4 C -0.061 4.061
5 C 0.242 3.758
6 H 0.098 0.902
7 O -0.358 6.358
8 C -0.599 4.599
9 H 0.075 0.925
10 C -0.125 4.125
11 N -0.494 5.494
12 Si 0.722 3.278
13 H -0.201 1.201
14 H -0.210 1.210
15 H -0.200 1.200
16 C -0.178 4.178
17 C -0.046 4.046
18 C -0.197 4.197
19 C -0.097 4.097
20 C -0.175 4.175
21 C 0.008 3.992
22 H 0.080 0.920
23 H 0.093 0.907
24 H 0.101 0.899
25 H 0.199 0.801
26 H 0.073 0.927
27 H 0.148 0.852
28 H 0.139 0.861
29 H 0.139 0.861
30 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -8.630 -10.037 1.427 13.314
hybrid contribution -0.093 -0.132 -1.318 1.328
sum -8.724 -10.169 0.108 13.398
Atomic orbital electron populations
1.21546 0.75311 1.03380 1.02211 1.48240 1.05385 1.01573 1.66024
1.76634 1.02502 1.06957 1.21335 1.25686 0.94522 0.92576 0.93316
1.18106 0.85833 0.82393 0.89444 0.90210 1.86558 1.48871 1.47125
1.53254 1.21394 1.15234 1.27654 0.95634 0.92460 1.24997 0.94922
0.95710 0.96897 1.70055 1.16007 1.31861 1.31446 0.86621 0.77732
0.79131 0.84275 1.20088 1.21030 1.20036 1.20005 0.92777 0.93597
1.11456 1.20488 0.98435 0.91858 0.93779 1.20553 0.96397 0.95323
1.07412 1.20582 0.92437 0.98684 0.97989 1.19664 0.99366 0.89031
1.09457 1.18883 0.91219 0.89510 0.99576 0.92028 0.90651 0.89876
0.80099 0.92653 0.85241 0.86095 0.86097 0.86608
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.12 1.53 11.40 59.85 0.68 2.21 16
2 N -0.43 -8.02 4.05 -65.46 -0.27 -8.29 16
3 N -0.26 -5.92 12.31 34.83 0.43 -5.49 16
4 C 0.12 2.78 6.23 -80.20 -0.50 2.28 16
5 C 0.30 7.92 3.35 -29.03 -0.10 7.82 16
6 H 0.08 2.17 8.14 -51.93 -0.42 1.75 16
7 O -0.56 -14.87 12.70 -35.23 -0.45 -15.32 16
8 C -0.56 -15.66 8.75 -34.44 -0.30 -15.96 16
9 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16
10 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16
11 N -0.86 -24.93 12.83 55.43 0.71 -24.22 16
12 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16
13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16
16 C -0.17 -3.56 6.33 -105.21 -0.67 -4.22 16
17 C -0.03 -0.45 10.07 -39.58 -0.40 -0.85 16
18 C -0.18 -2.59 9.97 -39.95 -0.40 -2.98 16
19 C -0.08 -1.03 9.96 -39.91 -0.40 -1.42 16
20 C -0.15 -2.27 9.97 -39.79 -0.40 -2.67 16
21 C 0.12 2.31 6.87 -84.17 -0.58 1.73 16
22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
25 H 0.35 8.76 8.95 45.56 0.41 9.17 16
26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16
27 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16
28 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16
29 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16
30 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16
LS Contribution 270.83 15.07 4.08 4.08
Total: -1.00 -32.35 270.83 -6.18 -38.53
By element:
Atomic # 1 Polarization: 8.83 SS G_CDS: -2.52 Total: 6.31 kcal
Atomic # 6 Polarization: -8.75 SS G_CDS: -3.15 Total: -11.90 kcal
Atomic # 7 Polarization: -38.87 SS G_CDS: 0.87 Total: -38.00 kcal
Atomic # 8 Polarization: -14.87 SS G_CDS: -0.45 Total: -15.32 kcal
Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal
Total LS contribution 4.08 Total: 4.08 kcal
Total: -32.35 -6.18 -38.53 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001535827873.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.354 kcal
(2) G-P(sol) polarization free energy of solvation -32.354 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.000 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.825 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds