Wall clock time and date at job start Mon Mar 30 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.39874 * 125.46531 * 2 1 4 4 C 1.30239 * 110.08716 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.10657 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47545 * 165.02724 * 5 4 3 7 7 O 1.42896 * 109.47189 * 45.02550 * 5 4 3 8 8 C 1.50706 * 109.47259 * 285.02383 * 5 4 3 9 9 H 1.08000 * 119.99302 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00436 * 179.72713 * 8 5 4 11 11 N 1.31515 * 119.99684 * 359.97438 * 10 8 5 12 12 Si 1.86800 * 120.00405 * 180.02562 * 10 8 5 13 13 H 1.48497 * 109.47050 * 59.99579 * 12 10 8 14 14 H 1.48496 * 109.47289 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46492 * 299.99554 * 12 10 8 16 16 C 1.45921 * 107.78494 * 0.26440 * 4 3 2 17 17 C 1.39955 * 134.02778 * 180.50705 * 16 4 3 18 18 C 1.36457 * 119.64118 * 179.60665 * 17 16 4 19 19 C 1.38970 * 120.62172 * 359.65876 * 18 17 16 20 20 C 1.36583 * 120.82509 * 0.02562 * 19 18 17 21 21 C 1.37040 * 125.46021 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47025 * 89.97067 * 1 2 3 23 23 H 1.08994 * 109.47040 * 209.97194 * 1 2 3 24 24 H 1.09003 * 109.47109 * 329.97557 * 1 2 3 25 25 H 0.96701 * 114.00155 * 299.99522 * 7 5 4 26 26 H 0.97004 * 120.00247 * 180.02562 * 11 10 8 27 27 H 1.07996 * 120.17469 * 359.28545 * 17 16 4 28 28 H 1.07999 * 119.69053 * 179.68226 * 18 17 16 29 29 H 1.08012 * 119.58769 * 180.02562 * 19 18 17 30 30 H 1.07999 * 120.08002 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2766 1.1392 0.0000 4 6 3.5324 0.7938 -0.0005 5 6 4.7115 1.7323 -0.0002 6 1 5.6141 1.1816 0.2647 7 8 4.4914 2.7733 0.9536 8 6 4.8749 2.3343 -1.3721 9 1 4.1927 2.0645 -2.1648 10 6 5.8913 3.2339 -1.6137 11 7 6.7180 3.5672 -0.6466 12 14 6.0934 3.9806 -3.3140 13 1 4.8611 4.7255 -3.6771 14 1 7.2509 4.9107 -3.3118 15 1 6.3284 2.8994 -4.3045 16 6 3.5936 -0.6641 -0.0074 17 6 4.6398 -1.5937 -0.0019 18 6 4.3565 -2.9285 -0.0033 19 6 3.0397 -3.3727 -0.0029 20 6 2.0017 -2.4850 -0.0017 21 6 2.2600 -1.1162 -0.0005 22 1 -0.3633 0.0005 -1.0277 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3633 0.8898 0.5142 25 1 3.7031 3.3058 0.7799 26 1 7.4329 4.2004 -0.8164 27 1 5.6657 -1.2563 -0.0019 28 1 5.1633 -3.6466 -0.0043 29 1 2.8346 -4.4331 -0.0036 30 1 0.9829 -2.8435 -0.0010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535827873.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:37 Heat of formation + Delta-G solvation = 13.313225 kcal Electronic energy + Delta-G solvation = -15732.970389 eV Core-core repulsion = 13107.572349 eV Total energy + Delta-G solvation = -2625.398039 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.12841 -38.24234 -37.53771 -34.35630 -34.24467 -31.25012 -30.65598 -29.74413 -27.06640 -24.90625 -23.64363 -22.69431 -20.68050 -19.17059 -18.00207 -17.77120 -16.73176 -16.36095 -16.33209 -16.04880 -15.25208 -14.96535 -14.83161 -14.33113 -13.93908 -13.55303 -13.35420 -13.12906 -12.82658 -12.70561 -12.46648 -12.11571 -11.99696 -11.74313 -11.41781 -10.87076 -10.70998 -10.41501 -9.55729 -8.70428 -8.17997 -6.45903 0.08426 0.64093 1.37876 1.40630 1.48535 1.60328 1.62394 2.37754 2.92804 3.05726 3.59231 3.67103 3.85885 4.17353 4.23767 4.34980 4.42983 4.50801 4.55127 4.63632 4.74295 5.00274 5.05228 5.41695 5.46812 5.59355 5.63804 5.70039 5.93046 6.02175 6.28099 6.59039 6.79791 7.19973 7.36335 8.85066 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.028668 B = 0.007933 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.463171 B = 3528.847801 C = 3873.348627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.424 5.424 3 N -0.286 5.286 4 C 0.083 3.917 5 C 0.306 3.694 6 H 0.055 0.945 7 O -0.570 6.570 8 C -0.574 4.574 9 H 0.045 0.955 10 C 0.034 3.966 11 N -0.892 5.892 12 Si 0.964 3.036 13 H -0.272 1.272 14 H -0.274 1.274 15 H -0.268 1.268 16 C -0.211 4.211 17 C -0.059 4.059 18 C -0.160 4.160 19 C -0.064 4.064 20 C -0.146 4.146 21 C 0.108 3.892 22 H 0.075 0.925 23 H 0.112 0.888 24 H 0.086 0.914 25 H 0.359 0.641 26 H 0.267 0.733 27 H 0.118 0.882 28 H 0.155 0.845 29 H 0.172 0.828 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.897 -13.535 0.255 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.213 5.213 3 N -0.100 5.100 4 C -0.094 4.094 5 C 0.246 3.754 6 H 0.072 0.928 7 O -0.373 6.373 8 C -0.612 4.612 9 H 0.063 0.937 10 C -0.170 4.170 11 N -0.528 5.528 12 Si 0.787 3.213 13 H -0.197 1.197 14 H -0.199 1.199 15 H -0.193 1.193 16 C -0.219 4.219 17 C -0.079 4.079 18 C -0.180 4.180 19 C -0.084 4.084 20 C -0.168 4.168 21 C -0.007 4.007 22 H 0.094 0.906 23 H 0.130 0.870 24 H 0.105 0.895 25 H 0.204 0.796 26 H 0.076 0.924 27 H 0.136 0.864 28 H 0.172 0.828 29 H 0.189 0.811 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.241 -12.670 0.596 16.302 hybrid contribution 0.316 0.526 -1.008 1.180 sum -9.926 -12.144 -0.412 15.689 Atomic orbital electron populations 1.22000 0.72152 1.05461 1.03797 1.48571 1.06937 1.00642 1.65133 1.76416 1.02665 1.09563 1.21382 1.25097 0.94154 0.93952 0.96220 1.17728 0.86701 0.82486 0.88454 0.92755 1.86490 1.49339 1.47826 1.53662 1.21563 1.15276 1.28213 0.96174 0.93661 1.25828 0.94337 0.95933 1.00898 1.70169 1.16574 1.32494 1.33601 0.85554 0.77927 0.78428 0.79342 1.19746 1.19902 1.19275 1.20244 0.95182 0.92553 1.13872 1.20632 0.97565 0.93372 0.96363 1.21011 0.98512 0.94110 1.04349 1.21187 0.91160 1.00996 0.95075 1.20204 1.01954 0.87023 1.07621 1.19338 0.90069 0.91020 1.00274 0.90599 0.86958 0.89486 0.79573 0.92362 0.86418 0.82752 0.81076 0.82616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.49 11.40 127.77 1.46 3.95 16 2 N -0.42 -15.70 4.05 -361.03 -1.46 -17.16 16 3 N -0.29 -13.37 12.31 -43.70 -0.54 -13.91 16 4 C 0.08 4.14 6.23 44.78 0.28 4.42 16 5 C 0.31 17.13 3.35 29.10 0.10 17.22 16 6 H 0.05 3.23 8.14 -2.39 -0.02 3.21 16 7 O -0.57 -32.42 12.70 -148.98 -1.89 -34.32 16 8 C -0.57 -33.60 8.75 25.60 0.22 -33.38 16 9 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 10 C 0.03 1.93 5.40 84.65 0.46 2.38 16 11 N -0.89 -53.55 12.83 21.45 0.28 -53.27 16 12 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 C -0.21 -9.04 6.33 -20.24 -0.13 -9.16 16 17 C -0.06 -2.14 10.07 22.27 0.22 -1.91 16 18 C -0.16 -4.22 9.97 22.03 0.22 -4.00 16 19 C -0.06 -1.40 9.96 22.06 0.22 -1.18 16 20 C -0.15 -3.71 9.97 22.14 0.22 -3.49 16 21 C 0.11 3.90 6.87 39.22 0.27 4.17 16 22 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.36 18.95 8.95 -74.06 -0.66 18.28 16 26 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 27 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 28 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 29 H 0.17 2.12 8.06 -2.90 -0.02 2.10 16 30 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -74.11 270.83 2.44 -71.67 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.49 Total: 21.39 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 3.54 Total: -20.98 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -1.72 Total: -84.34 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.89 Total: -34.32 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -74.11 2.44 -71.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535827873.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.985 kcal (2) G-P(sol) polarization free energy of solvation -74.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds