Wall clock time and date at job start Mon Mar 30 2020 03:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00143 * 2 1 4 4 H 1.48500 * 109.46929 * 84.78306 * 3 2 1 5 5 H 1.48498 * 109.47038 * 324.78599 * 3 2 1 6 6 H 1.48498 * 109.47209 * 204.78304 * 3 2 1 7 7 C 1.38819 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99456 * 20.88510 * 7 2 1 9 9 N 1.36927 * 120.00105 * 200.88293 * 7 2 1 10 10 C 1.46685 * 121.34072 * 25.85239 * 9 7 2 11 11 C 1.51217 * 109.44978 * 135.47501 * 10 9 7 12 12 C 1.38828 * 117.78218 * 191.05687 * 11 10 9 13 13 C 1.37960 * 120.50697 * 181.34054 * 12 11 10 14 14 C 1.38265 * 119.71685 * 359.97438 * 13 12 11 15 15 C 1.37910 * 119.82641 * 359.74756 * 14 13 12 16 16 C 1.37677 * 122.36228 * 11.93647 * 11 10 9 17 17 C 1.50599 * 122.86265 * 358.33044 * 16 11 10 18 18 C 1.47235 * 121.33681 * 206.13770 * 9 7 2 19 19 H 1.08996 * 109.77703 * 124.62418 * 18 9 7 20 20 C 1.52996 * 109.77196 * 3.82806 * 18 9 7 21 21 N 1.46901 * 109.47086 * 55.00303 * 20 18 9 22 22 H 0.96998 * 120.00357 * 185.25803 * 1 2 3 23 23 H 1.09001 * 109.43592 * 255.63685 * 10 9 7 24 24 H 1.08996 * 109.43538 * 15.50848 * 10 9 7 25 25 H 1.08006 * 119.74790 * 1.37331 * 12 11 10 26 26 H 1.08005 * 120.14409 * 179.97438 * 13 12 11 27 27 H 1.07996 * 120.08768 * 179.76771 * 14 13 12 28 28 H 1.08001 * 119.71015 * 180.02562 * 15 14 13 29 29 H 1.09002 * 109.19761 * 259.78823 * 17 16 11 30 30 H 1.08997 * 109.20024 * 140.50055 * 17 16 11 31 31 H 1.08998 * 109.47102 * 174.99944 * 20 18 9 32 32 H 1.09003 * 109.47404 * 295.00409 * 20 18 9 33 33 H 1.00906 * 111.00278 * 56.04538 * 21 20 18 34 34 H 1.00907 * 111.00440 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3875 2.1100 1.3943 5 1 1.5071 2.6183 -0.8073 6 1 3.5986 1.4108 -0.5869 7 6 2.0103 -1.2022 0.0005 8 1 1.5235 -2.1069 -0.3325 9 7 3.3121 -1.2410 0.4232 10 6 3.8368 -0.2507 1.3697 11 6 4.6617 -0.9513 2.4258 12 6 5.0473 -0.2163 3.5387 13 6 5.8239 -0.7916 4.5232 14 6 6.2204 -2.1104 4.4002 15 6 5.8332 -2.8432 3.2979 16 6 5.0478 -2.2674 2.3064 17 6 4.6542 -3.1316 1.1375 18 6 4.2432 -2.2747 -0.0587 19 1 5.1241 -1.8033 -0.4946 20 6 3.5501 -3.1475 -1.1068 21 7 3.0198 -2.2960 -2.1800 22 1 -0.4850 -0.8365 0.0770 23 1 4.4591 0.4673 0.8356 24 1 3.0068 0.2723 1.8447 25 1 4.7364 0.8136 3.6348 26 1 6.1208 -0.2143 5.3863 27 1 6.8316 -2.5657 5.1654 28 1 6.1437 -3.8733 3.2039 29 1 3.8175 -3.7672 1.4274 30 1 5.4993 -3.7595 0.8553 31 1 4.2682 -3.8532 -1.5244 32 1 2.7317 -3.6954 -0.6398 33 1 3.7494 -1.7295 -2.5861 34 1 2.5571 -2.8495 -2.8856 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082638996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:19 Heat of formation + Delta-G solvation = 57.244979 kcal Electronic energy + Delta-G solvation = -16632.838649 eV Core-core repulsion = 14145.178728 eV Total energy + Delta-G solvation = -2487.659921 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.46695 -36.77691 -33.55897 -32.58615 -31.53300 -29.98903 -28.82004 -25.19970 -24.36773 -22.68950 -21.62949 -20.68539 -19.08389 -16.88603 -16.21417 -15.39510 -15.11679 -14.76632 -14.38313 -14.13119 -13.69001 -13.25818 -12.95072 -12.74336 -12.50996 -12.19542 -11.82290 -11.46730 -11.25667 -11.06752 -10.74444 -10.61571 -10.08753 -10.02641 -9.53976 -8.88651 -8.43627 -8.33555 -8.05185 -7.66703 -6.78407 -6.01311 -2.96809 1.74796 1.80049 3.53225 3.66981 3.79906 4.14970 4.81705 4.87525 5.07782 5.22365 5.34301 5.36038 5.40670 5.63091 5.73772 5.78220 5.91023 5.93652 5.97513 6.10682 6.19944 6.29684 6.39459 6.42476 6.47119 6.59273 6.80806 6.83445 6.94709 7.20678 7.42708 7.88446 8.15565 8.21757 8.70377 9.31561 9.80520 10.41690 11.44847 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.024513 B = 0.011366 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.961666 B = 2462.986511 C = 3267.707610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.022 4.022 3 Si 1.045 2.955 4 H -0.303 1.303 5 H -0.304 1.304 6 H -0.288 1.288 7 C -0.277 4.277 8 H 0.082 0.918 9 N -0.590 5.590 10 C 0.158 3.842 11 C -0.075 4.075 12 C -0.124 4.124 13 C -0.129 4.129 14 C -0.135 4.135 15 C -0.128 4.128 16 C -0.060 4.060 17 C -0.093 4.093 18 C 0.168 3.832 19 H 0.031 0.969 20 C 0.083 3.917 21 N -0.810 5.810 22 H 0.259 0.741 23 H 0.039 0.961 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.008 0.992 32 H 0.069 0.931 33 H 0.329 0.671 34 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.416 -5.232 3.456 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.220 4.220 3 Si 0.879 3.121 4 H -0.231 1.231 5 H -0.232 1.232 6 H -0.214 1.214 7 C -0.406 4.406 8 H 0.099 0.901 9 N -0.313 5.313 10 C 0.032 3.968 11 C -0.076 4.076 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.153 4.153 15 C -0.146 4.146 16 C -0.060 4.060 17 C -0.132 4.132 18 C 0.061 3.939 19 H 0.048 0.952 20 C -0.049 4.049 21 N -0.338 5.338 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.102 0.898 25 H 0.136 0.864 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.026 0.974 32 H 0.087 0.913 33 H 0.141 0.859 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.736 -3.286 3.904 12.797 hybrid contribution 1.010 -2.088 -0.396 2.353 sum 12.746 -5.374 3.508 14.270 Atomic orbital electron populations 1.70832 1.06115 1.28984 1.51983 1.25902 0.96550 1.00135 0.99430 0.84127 0.74953 0.77633 0.75415 1.23136 1.23242 1.21435 1.20139 0.84518 0.96079 1.39837 0.90087 1.44429 1.08849 1.31000 1.47065 1.20427 0.95716 0.91794 0.88859 1.20644 0.96852 0.93905 0.96244 1.21138 0.98838 0.99955 0.94312 1.20953 0.99395 0.95437 0.98914 1.20894 1.01470 0.94792 0.98119 1.21141 0.99483 0.99379 0.94620 1.19510 0.96598 0.93820 0.96092 1.20945 1.00216 0.97395 0.94693 1.20507 0.92232 0.90088 0.91070 0.95177 1.21655 0.96886 0.93386 0.92927 1.58568 1.34211 1.26731 1.14270 0.93115 0.94323 0.89824 0.86397 0.86686 0.86864 0.86882 0.90775 0.92090 0.97385 0.91278 0.85856 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.61 13.70 55.49 0.76 -28.85 16 2 C -0.02 -0.64 5.24 -17.43 -0.09 -0.74 16 3 Si 1.05 26.89 24.66 -169.99 -4.19 22.70 16 4 H -0.30 -7.44 6.79 56.52 0.38 -7.05 16 5 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16 6 H -0.29 -7.03 6.27 56.52 0.35 -6.68 16 7 C -0.28 -7.56 7.86 -15.06 -0.12 -7.68 16 8 H 0.08 2.36 6.29 -52.49 -0.33 2.03 16 9 N -0.59 -13.98 2.73 -166.16 -0.45 -14.43 16 10 C 0.16 3.56 4.03 -4.84 -0.02 3.54 16 11 C -0.07 -1.48 5.83 -104.36 -0.61 -2.09 16 12 C -0.12 -2.14 9.62 -39.46 -0.38 -2.52 16 13 C -0.13 -1.91 10.05 -39.67 -0.40 -2.31 16 14 C -0.13 -1.93 10.04 -39.69 -0.40 -2.33 16 15 C -0.13 -1.98 9.59 -39.43 -0.38 -2.36 16 16 C -0.06 -1.09 5.76 -104.60 -0.60 -1.69 16 17 C -0.09 -1.61 5.21 -28.04 -0.15 -1.76 16 18 C 0.17 3.31 3.10 -67.64 -0.21 3.10 16 19 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 20 C 0.08 1.48 5.55 -3.83 -0.02 1.46 16 21 N -0.81 -15.17 7.42 -10.37 -0.08 -15.25 16 22 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 23 H 0.04 0.88 6.29 -51.93 -0.33 0.55 16 24 H 0.08 2.05 5.26 -51.93 -0.27 1.78 16 25 H 0.12 1.88 8.05 -52.48 -0.42 1.45 16 26 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 27 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.11 1.47 8.05 -52.49 -0.42 1.05 16 29 H 0.07 1.33 8.01 -51.93 -0.42 0.92 16 30 H 0.06 0.89 8.10 -51.93 -0.42 0.46 16 31 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.07 1.34 7.32 -51.93 -0.38 0.96 16 33 H 0.33 5.80 8.99 -39.29 -0.35 5.45 16 34 H 0.32 5.26 9.08 -39.29 -0.36 4.90 16 LS Contribution 267.15 15.07 4.03 4.03 Total: -1.00 -31.60 267.15 -7.92 -39.52 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.61 Total: 7.65 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -3.37 Total: -15.37 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.23 Total: -58.53 kcal Atomic # 14 Polarization: 26.89 SS G_CDS: -4.19 Total: 22.70 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.60 -7.92 -39.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082638996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.769 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds