Wall clock time and date at job start Mon Mar 30 2020 03:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00143 * 2 1 4 4 H 1.48500 * 109.46929 * 84.78306 * 3 2 1 5 5 H 1.48498 * 109.47038 * 324.78599 * 3 2 1 6 6 H 1.48498 * 109.47209 * 204.78304 * 3 2 1 7 7 C 1.38819 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99456 * 20.88510 * 7 2 1 9 9 N 1.36927 * 120.00105 * 200.88293 * 7 2 1 10 10 C 1.46685 * 121.34072 * 25.85239 * 9 7 2 11 11 C 1.51217 * 109.44978 * 135.47501 * 10 9 7 12 12 C 1.38828 * 117.78218 * 191.05687 * 11 10 9 13 13 C 1.37960 * 120.50697 * 181.34054 * 12 11 10 14 14 C 1.38265 * 119.71685 * 359.97438 * 13 12 11 15 15 C 1.37910 * 119.82641 * 359.74756 * 14 13 12 16 16 C 1.37677 * 122.36228 * 11.93647 * 11 10 9 17 17 C 1.50599 * 122.86265 * 358.33044 * 16 11 10 18 18 C 1.47235 * 121.33681 * 206.13770 * 9 7 2 19 19 H 1.08996 * 109.77703 * 124.62418 * 18 9 7 20 20 C 1.52996 * 109.77196 * 3.82806 * 18 9 7 21 21 N 1.46901 * 109.47086 * 55.00303 * 20 18 9 22 22 H 0.96998 * 120.00357 * 185.25803 * 1 2 3 23 23 H 1.09001 * 109.43592 * 255.63685 * 10 9 7 24 24 H 1.08996 * 109.43538 * 15.50848 * 10 9 7 25 25 H 1.08006 * 119.74790 * 1.37331 * 12 11 10 26 26 H 1.08005 * 120.14409 * 179.97438 * 13 12 11 27 27 H 1.07996 * 120.08768 * 179.76771 * 14 13 12 28 28 H 1.08001 * 119.71015 * 180.02562 * 15 14 13 29 29 H 1.09002 * 109.19761 * 259.78823 * 17 16 11 30 30 H 1.08997 * 109.20024 * 140.50055 * 17 16 11 31 31 H 1.08998 * 109.47102 * 174.99944 * 20 18 9 32 32 H 1.09003 * 109.47404 * 295.00409 * 20 18 9 33 33 H 1.00906 * 111.00278 * 56.04538 * 21 20 18 34 34 H 1.00907 * 111.00440 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3875 2.1100 1.3943 5 1 1.5071 2.6183 -0.8073 6 1 3.5986 1.4108 -0.5869 7 6 2.0103 -1.2022 0.0005 8 1 1.5235 -2.1069 -0.3325 9 7 3.3121 -1.2410 0.4232 10 6 3.8368 -0.2507 1.3697 11 6 4.6617 -0.9513 2.4258 12 6 5.0473 -0.2163 3.5387 13 6 5.8239 -0.7916 4.5232 14 6 6.2204 -2.1104 4.4002 15 6 5.8332 -2.8432 3.2979 16 6 5.0478 -2.2674 2.3064 17 6 4.6542 -3.1316 1.1375 18 6 4.2432 -2.2747 -0.0587 19 1 5.1241 -1.8033 -0.4946 20 6 3.5501 -3.1475 -1.1068 21 7 3.0198 -2.2960 -2.1800 22 1 -0.4850 -0.8365 0.0770 23 1 4.4591 0.4673 0.8356 24 1 3.0068 0.2723 1.8447 25 1 4.7364 0.8136 3.6348 26 1 6.1208 -0.2143 5.3863 27 1 6.8316 -2.5657 5.1654 28 1 6.1437 -3.8733 3.2039 29 1 3.8175 -3.7672 1.4274 30 1 5.4993 -3.7595 0.8553 31 1 4.2682 -3.8532 -1.5244 32 1 2.7317 -3.6954 -0.6398 33 1 3.7494 -1.7295 -2.5861 34 1 2.5571 -2.8495 -2.8856 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082638996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:19 Heat of formation + Delta-G solvation = 34.914625 kcal Electronic energy + Delta-G solvation = -16633.806965 eV Core-core repulsion = 14145.178728 eV Total energy + Delta-G solvation = -2488.628238 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.84980 -38.30598 -35.22238 -34.20298 -33.19354 -31.60256 -30.24493 -26.97646 -25.76169 -24.51918 -22.94192 -22.11739 -20.82144 -18.81668 -17.62916 -16.86559 -16.74306 -16.23772 -15.80554 -15.73185 -15.28354 -14.81424 -14.61784 -14.33766 -13.85940 -13.70218 -13.57419 -13.04855 -12.70754 -12.64531 -12.26728 -12.11079 -11.84549 -11.59352 -11.40261 -11.00093 -10.49790 -9.63148 -9.38923 -9.18419 -8.77006 -8.27019 -5.17533 0.51674 0.53153 1.44554 1.58126 1.72918 2.70790 2.89562 3.17744 3.45506 3.72765 3.91413 4.03880 4.12703 4.19935 4.33456 4.44973 4.49834 4.54273 4.60323 4.63712 4.80582 4.83118 4.87706 4.90366 5.17531 5.21396 5.41190 5.63599 5.64882 5.86168 6.09547 6.19885 6.44638 6.54136 6.82330 7.12430 7.74258 8.29202 9.18516 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.024513 B = 0.011366 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.961666 B = 2462.986511 C = 3267.707610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.086 4.086 3 Si 1.085 2.915 4 H -0.291 1.291 5 H -0.318 1.318 6 H -0.270 1.270 7 C -0.234 4.234 8 H 0.058 0.942 9 N -0.606 5.606 10 C 0.159 3.841 11 C -0.109 4.109 12 C -0.138 4.138 13 C -0.124 4.124 14 C -0.125 4.125 15 C -0.127 4.127 16 C -0.081 4.081 17 C -0.086 4.086 18 C 0.161 3.839 19 H 0.037 0.963 20 C 0.087 3.913 21 N -0.837 5.837 22 H 0.242 0.758 23 H 0.037 0.963 24 H 0.055 0.945 25 H 0.121 0.879 26 H 0.147 0.853 27 H 0.152 0.848 28 H 0.143 0.857 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.336 0.664 34 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.793 -6.464 4.892 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.277 4.277 3 Si 0.916 3.084 4 H -0.219 1.219 5 H -0.248 1.248 6 H -0.195 1.195 7 C -0.364 4.364 8 H 0.075 0.925 9 N -0.330 5.330 10 C 0.033 3.967 11 C -0.110 4.110 12 C -0.157 4.157 13 C -0.142 4.142 14 C -0.143 4.143 15 C -0.145 4.145 16 C -0.081 4.081 17 C -0.125 4.125 18 C 0.055 3.945 19 H 0.055 0.945 20 C -0.044 4.044 21 N -0.367 5.367 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.139 0.861 26 H 0.165 0.835 27 H 0.170 0.830 28 H 0.160 0.840 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.149 0.851 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.180 -4.546 5.349 16.725 hybrid contribution 0.091 -1.849 -0.774 2.007 sum 15.271 -6.395 4.575 17.177 Atomic orbital electron populations 1.70943 1.07389 1.27902 1.56707 1.26767 0.96520 1.03259 1.01131 0.83549 0.74501 0.74499 0.75833 1.21911 1.24796 1.19528 1.19927 0.85938 0.94591 1.35959 0.92458 1.44522 1.08474 1.32153 1.47866 1.20274 0.95156 0.91767 0.89465 1.20435 0.98708 0.95198 0.96665 1.21295 0.99640 1.00303 0.94440 1.21340 0.97881 0.96130 0.98872 1.21393 1.00343 0.94329 0.98210 1.21454 0.98240 1.00805 0.93964 1.19703 0.97675 0.93369 0.97377 1.20858 1.01151 0.97016 0.93432 1.20787 0.91541 0.89483 0.92640 0.94485 1.21607 0.96949 0.93452 0.92385 1.58479 1.35102 1.27910 1.15203 0.94875 0.94608 0.92682 0.86144 0.83487 0.83026 0.83959 0.91867 0.88453 0.93380 0.93365 0.85149 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.94 13.70 21.65 0.30 -64.65 16 2 C -0.09 -5.19 5.24 84.86 0.44 -4.74 16 3 Si 1.09 56.22 24.66 68.60 1.69 57.91 16 4 H -0.29 -14.30 6.79 99.48 0.68 -13.62 16 5 H -0.32 -17.08 7.11 99.48 0.71 -16.37 16 6 H -0.27 -12.93 6.27 99.48 0.62 -12.31 16 7 C -0.23 -13.09 7.86 84.04 0.66 -12.43 16 8 H 0.06 3.46 6.29 -2.91 -0.02 3.44 16 9 N -0.61 -28.74 2.73 -679.60 -1.86 -30.59 16 10 C 0.16 7.17 4.03 85.76 0.35 7.52 16 11 C -0.11 -4.15 5.83 -19.69 -0.11 -4.27 16 12 C -0.14 -4.51 9.62 22.35 0.22 -4.30 16 13 C -0.12 -3.19 10.05 22.21 0.22 -2.97 16 14 C -0.13 -2.93 10.04 22.20 0.22 -2.70 16 15 C -0.13 -3.35 9.59 22.37 0.21 -3.14 16 16 C -0.08 -2.73 5.76 -19.85 -0.11 -2.85 16 17 C -0.09 -2.75 5.21 29.74 0.16 -2.59 16 18 C 0.16 6.10 3.10 44.78 0.14 6.23 16 19 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 20 C 0.09 3.01 5.55 86.30 0.48 3.48 16 21 N -0.84 -30.95 7.42 -186.72 -1.38 -32.34 16 22 H 0.24 16.16 8.73 -92.71 -0.81 15.35 16 23 H 0.04 1.62 6.29 -2.39 -0.01 1.61 16 24 H 0.06 2.76 5.26 -2.39 -0.01 2.75 16 25 H 0.12 3.72 8.05 -2.91 -0.02 3.69 16 26 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 27 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 28 H 0.14 2.90 8.05 -2.91 -0.02 2.87 16 29 H 0.06 2.16 8.01 -2.39 -0.02 2.14 16 30 H 0.10 2.40 8.10 -2.39 -0.02 2.38 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.86 7.32 -2.39 -0.02 1.84 16 33 H 0.34 11.52 8.99 -89.69 -0.81 10.71 16 34 H 0.34 10.80 9.08 -89.69 -0.81 9.99 16 Total: -1.00 -71.08 267.15 0.96 -70.12 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -0.66 Total: 22.30 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 2.87 Total: -22.75 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -2.95 Total: -127.58 kcal Atomic # 14 Polarization: 56.22 SS G_CDS: 1.69 Total: 57.91 kcal Total: -71.08 0.96 -70.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082638996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.035 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds