Wall clock time and date at job start Mon Mar 30 2020 03:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00220 * 2 1 4 4 H 1.48501 * 109.47006 * 239.99815 * 3 2 1 5 5 H 1.48502 * 109.47247 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47355 * 119.99743 * 3 2 1 7 7 C 1.37877 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99778 * 170.61862 * 7 2 1 9 9 C 1.50704 * 120.00109 * 350.62345 * 7 2 1 10 10 H 1.09000 * 109.46877 * 174.59071 * 9 7 2 11 11 C 1.50700 * 109.47136 * 294.58932 * 9 7 2 12 12 C 1.38230 * 119.99741 * 271.25475 * 11 9 7 13 13 C 1.38240 * 119.99579 * 179.76472 * 12 11 9 14 14 C 1.38233 * 120.00282 * 0.51098 * 13 12 11 15 15 C 1.38237 * 119.99692 * 359.74189 * 14 13 12 16 16 C 1.38235 * 119.99920 * 91.52783 * 11 9 7 17 17 N 1.46901 * 109.47025 * 54.59148 * 9 7 2 18 18 C 1.47480 * 111.00372 * 69.99732 * 17 9 7 19 19 C 1.53509 * 87.99613 * 138.67147 * 18 17 9 20 20 N 1.46902 * 114.16932 * 87.65696 * 19 18 17 21 21 C 1.47483 * 110.99871 * 165.97168 * 17 9 7 22 22 H 0.97011 * 119.99922 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.00333 * 0.02562 * 12 11 9 24 24 H 1.08001 * 119.99875 * 180.23104 * 13 12 11 25 25 H 1.07995 * 120.00016 * 179.72279 * 14 13 12 26 26 H 1.07997 * 119.99995 * 179.97438 * 15 14 13 27 27 H 1.07997 * 119.99738 * 0.02562 * 16 11 9 28 28 H 1.08995 * 113.47681 * 253.47221 * 18 17 9 29 29 H 1.09000 * 113.47300 * 23.87655 * 18 17 9 30 30 H 1.08996 * 114.17361 * 220.35813 * 19 18 17 31 31 H 1.00901 * 111.00428 * 180.02562 * 20 19 18 32 32 H 1.00910 * 111.00001 * 303.95229 * 20 19 18 33 33 H 1.08994 * 113.47277 * 336.05966 * 21 17 9 34 34 H 1.09004 * 113.47272 * 106.46845 * 21 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0736 -1.2005 -0.1519 9 6 1.2660 -2.4904 0.2137 10 1 1.9544 -3.3259 0.0864 11 6 0.6935 -2.5190 1.6075 12 6 1.4476 -3.0155 2.6542 13 6 0.9242 -3.0373 3.9336 14 6 -0.3569 -2.5724 4.1643 15 6 -1.1129 -2.0807 3.1166 16 6 -0.5877 -2.0540 1.8382 17 7 0.1764 -2.6000 -0.7655 18 6 0.7070 -2.8145 -2.1248 19 6 -0.4172 -3.8365 -2.3441 20 7 -1.6704 -3.2544 -2.8428 21 6 -0.3528 -3.9757 -0.8154 22 1 -0.4850 0.8401 -0.0004 23 1 2.4471 -3.3825 2.4733 24 1 1.5147 -3.4218 4.7521 25 1 -0.7674 -2.5936 5.1630 26 1 -2.1140 -1.7179 3.2967 27 1 -1.1785 -1.6706 1.0195 28 1 0.6268 -1.9365 -2.7657 29 1 1.7035 -3.2558 -2.1372 30 1 -0.1088 -4.7296 -2.8875 31 1 -2.3746 -3.9659 -2.9692 32 1 -2.0001 -2.5250 -2.2283 33 1 0.3605 -4.7278 -0.4785 34 1 -1.3308 -4.0820 -0.3458 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083635763.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:56 Heat of formation + Delta-G solvation = 74.448643 kcal Electronic energy + Delta-G solvation = -16652.330751 eV Core-core repulsion = 14165.416837 eV Total energy + Delta-G solvation = -2486.913914 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.43973 -37.78342 -33.75683 -31.64983 -30.33597 -29.76039 -27.27411 -25.14837 -24.44775 -22.37896 -21.37141 -19.93995 -18.55154 -16.59736 -16.18178 -15.24134 -15.00218 -14.44328 -14.05534 -13.87534 -13.36492 -12.99033 -12.75308 -12.26484 -12.09124 -11.79830 -11.63804 -11.39598 -10.91942 -10.70524 -10.69112 -10.19642 -10.08399 -9.79683 -9.61531 -9.17679 -8.48146 -8.11023 -7.86584 -7.47311 -7.42251 -5.93659 -4.10122 2.42658 2.53016 3.31667 3.36377 3.39959 4.42113 4.88521 4.97118 5.12776 5.30360 5.44733 5.75481 5.76810 5.86827 5.94902 6.19826 6.22433 6.31857 6.40193 6.53818 6.56537 6.70928 6.82780 6.94757 7.04798 7.16955 7.30351 7.49511 7.67369 7.70757 7.87536 7.97045 8.01406 8.19059 8.28468 8.40655 8.95365 9.56601 11.02950 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.014277 C = 0.009067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.608715 B = 1960.774974 C = 3087.291222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.089 3.911 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.534 4.534 8 H 0.056 0.944 9 C 0.214 3.786 10 H 0.005 0.995 11 C -0.026 4.026 12 C -0.135 4.135 13 C -0.141 4.141 14 C -0.153 4.153 15 C -0.146 4.146 16 C -0.068 4.068 17 N -0.405 5.405 18 C 0.029 3.971 19 C 0.059 3.941 20 N -0.823 5.823 21 C -0.055 4.055 22 H 0.257 0.743 23 H 0.104 0.896 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.151 0.849 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.329 0.671 32 H 0.357 0.643 33 H 0.048 0.952 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.373 -6.254 0.807 6.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.119 4.119 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.572 4.572 8 H 0.074 0.926 9 C 0.107 3.893 10 H 0.023 0.977 11 C -0.028 4.028 12 C -0.154 4.154 13 C -0.159 4.159 14 C -0.171 4.171 15 C -0.164 4.164 16 C -0.087 4.087 17 N -0.127 5.127 18 C -0.101 4.101 19 C -0.054 4.054 20 N -0.351 5.351 21 C -0.187 4.187 22 H 0.067 0.933 23 H 0.122 0.878 24 H 0.120 0.880 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.169 0.831 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.141 0.859 32 H 0.172 0.828 33 H 0.067 0.933 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.551 -5.309 0.330 5.899 hybrid contribution 0.875 0.089 1.176 1.468 sum -1.676 -5.219 1.505 5.685 Atomic orbital electron populations 1.70063 1.05458 1.25702 1.44629 1.24872 0.94690 0.98447 0.93914 0.86864 0.80003 0.83791 0.78548 1.20334 1.21231 1.20391 1.20700 0.93426 0.89969 1.53070 0.92567 1.18807 0.88215 0.95705 0.86536 0.97684 1.20276 0.92961 0.92951 0.96571 1.20889 0.99271 1.02223 0.92976 1.20783 0.95926 1.02842 0.96336 1.20794 0.95364 1.03052 0.97926 1.21150 0.99251 1.01870 0.94136 1.21508 0.95881 0.94857 0.96438 1.69344 1.25499 1.16762 1.01100 1.23475 0.94627 0.97787 0.94243 1.22715 0.92724 0.97088 0.92871 1.58622 1.05738 1.15615 1.55156 1.24703 1.00835 0.95728 0.97398 0.93306 0.87802 0.87992 0.88182 0.87991 0.83099 0.90375 0.92873 0.90589 0.85912 0.82849 0.93336 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.79 9.57 55.43 0.53 -21.26 16 2 C 0.09 2.36 5.21 -17.82 -0.09 2.27 16 3 Si 0.88 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.53 -14.10 8.29 -34.44 -0.29 -14.39 16 8 H 0.06 1.50 7.83 -52.49 -0.41 1.09 16 9 C 0.21 5.13 1.52 -70.01 -0.11 5.02 16 10 H 0.01 0.13 7.51 -51.93 -0.39 -0.26 16 11 C -0.03 -0.62 4.40 -104.63 -0.46 -1.08 16 12 C -0.13 -2.90 9.71 -39.58 -0.38 -3.28 16 13 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 14 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 15 C -0.15 -2.98 10.05 -39.58 -0.40 -3.38 16 16 C -0.07 -1.57 7.91 -39.58 -0.31 -1.88 16 17 N -0.40 -8.86 3.56 -239.20 -0.85 -9.71 16 18 C 0.03 0.58 6.99 -7.54 -0.05 0.53 16 19 C 0.06 1.00 5.43 -67.39 -0.37 0.64 16 20 N -0.82 -13.16 9.68 -4.35 -0.04 -13.21 16 21 C -0.05 -1.02 6.83 -7.47 -0.05 -1.07 16 22 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 23 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 24 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 25 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 26 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.15 3.70 5.98 -52.49 -0.31 3.39 16 28 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 29 H 0.05 1.06 7.77 -51.93 -0.40 0.66 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.33 4.33 9.08 -39.29 -0.36 3.97 16 32 H 0.36 6.28 8.71 -39.29 -0.34 5.94 16 33 H 0.05 0.90 7.70 -51.93 -0.40 0.50 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 279.64 15.07 4.21 4.21 Total: -1.00 -26.88 279.64 -9.19 -36.07 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -4.71 Total: 11.06 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -3.30 Total: -23.06 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -0.36 Total: -44.18 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -26.88 -9.19 -36.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083635763.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.515 kcal (2) G-P(sol) polarization free energy of solvation -26.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds