Wall clock time and date at job start Mon Mar 30 2020 03:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00220 * 2 1 4 4 H 1.48501 * 109.47006 * 239.99815 * 3 2 1 5 5 H 1.48502 * 109.47247 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47355 * 119.99743 * 3 2 1 7 7 C 1.37877 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99778 * 170.61862 * 7 2 1 9 9 C 1.50704 * 120.00109 * 350.62345 * 7 2 1 10 10 H 1.09000 * 109.46877 * 174.59071 * 9 7 2 11 11 C 1.50700 * 109.47136 * 294.58932 * 9 7 2 12 12 C 1.38230 * 119.99741 * 271.25475 * 11 9 7 13 13 C 1.38240 * 119.99579 * 179.76472 * 12 11 9 14 14 C 1.38233 * 120.00282 * 0.51098 * 13 12 11 15 15 C 1.38237 * 119.99692 * 359.74189 * 14 13 12 16 16 C 1.38235 * 119.99920 * 91.52783 * 11 9 7 17 17 N 1.46901 * 109.47025 * 54.59148 * 9 7 2 18 18 C 1.47480 * 111.00372 * 69.99732 * 17 9 7 19 19 C 1.53509 * 87.99613 * 138.67147 * 18 17 9 20 20 N 1.46902 * 114.16932 * 87.65696 * 19 18 17 21 21 C 1.47483 * 110.99871 * 165.97168 * 17 9 7 22 22 H 0.97011 * 119.99922 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.00333 * 0.02562 * 12 11 9 24 24 H 1.08001 * 119.99875 * 180.23104 * 13 12 11 25 25 H 1.07995 * 120.00016 * 179.72279 * 14 13 12 26 26 H 1.07997 * 119.99995 * 179.97438 * 15 14 13 27 27 H 1.07997 * 119.99738 * 0.02562 * 16 11 9 28 28 H 1.08995 * 113.47681 * 253.47221 * 18 17 9 29 29 H 1.09000 * 113.47300 * 23.87655 * 18 17 9 30 30 H 1.08996 * 114.17361 * 220.35813 * 19 18 17 31 31 H 1.00901 * 111.00428 * 180.02562 * 20 19 18 32 32 H 1.00910 * 111.00001 * 303.95229 * 20 19 18 33 33 H 1.08994 * 113.47277 * 336.05966 * 21 17 9 34 34 H 1.09004 * 113.47272 * 106.46845 * 21 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0736 -1.2005 -0.1519 9 6 1.2660 -2.4904 0.2137 10 1 1.9544 -3.3259 0.0864 11 6 0.6935 -2.5190 1.6075 12 6 1.4476 -3.0155 2.6542 13 6 0.9242 -3.0373 3.9336 14 6 -0.3569 -2.5724 4.1643 15 6 -1.1129 -2.0807 3.1166 16 6 -0.5877 -2.0540 1.8382 17 7 0.1764 -2.6000 -0.7655 18 6 0.7070 -2.8145 -2.1248 19 6 -0.4172 -3.8365 -2.3441 20 7 -1.6704 -3.2544 -2.8428 21 6 -0.3528 -3.9757 -0.8154 22 1 -0.4850 0.8401 -0.0004 23 1 2.4471 -3.3825 2.4733 24 1 1.5147 -3.4218 4.7521 25 1 -0.7674 -2.5936 5.1630 26 1 -2.1140 -1.7179 3.2967 27 1 -1.1785 -1.6706 1.0195 28 1 0.6268 -1.9365 -2.7657 29 1 1.7035 -3.2558 -2.1372 30 1 -0.1088 -4.7296 -2.8875 31 1 -2.3746 -3.9659 -2.9692 32 1 -2.0001 -2.5250 -2.2283 33 1 0.3605 -4.7278 -0.4785 34 1 -1.3308 -4.0820 -0.3458 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083635763.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:56 Heat of formation + Delta-G solvation = 57.629730 kcal Electronic energy + Delta-G solvation = -16653.060074 eV Core-core repulsion = 14165.416837 eV Total energy + Delta-G solvation = -2487.643237 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.04862 -39.36627 -35.51146 -33.36839 -31.92171 -31.36424 -29.00492 -26.81209 -26.11843 -24.09325 -22.97271 -21.61088 -20.07733 -18.44859 -17.73385 -16.87151 -16.74442 -16.14143 -15.63423 -15.42569 -15.11984 -14.54944 -14.35334 -13.85051 -13.71985 -13.47644 -13.30296 -13.04534 -12.81341 -12.54294 -12.37966 -11.84144 -11.78150 -11.52713 -11.25449 -10.95926 -10.45715 -9.50760 -9.46038 -9.14933 -9.09695 -7.91618 -6.13510 0.79980 0.92869 1.40112 1.42455 1.47144 2.45458 3.17989 3.32391 3.56706 3.63397 3.97146 4.25369 4.31871 4.34303 4.46429 4.63360 4.68075 4.69795 4.85344 4.91275 4.99659 5.11972 5.17444 5.29023 5.41332 5.52753 5.68611 5.76491 5.88085 6.09814 6.27977 6.33684 6.41367 6.52056 6.56774 6.76669 7.05862 7.53978 9.01337 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.014277 C = 0.009067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.608715 B = 1960.774974 C = 3087.291222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.056 3.944 3 Si 0.927 3.073 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.555 4.555 8 H 0.040 0.960 9 C 0.216 3.784 10 H -0.007 1.007 11 C -0.050 4.050 12 C -0.152 4.152 13 C -0.137 4.137 14 C -0.147 4.147 15 C -0.152 4.152 16 C -0.085 4.085 17 N -0.421 5.421 18 C 0.021 3.979 19 C 0.084 3.916 20 N -0.822 5.822 21 C -0.048 4.048 22 H 0.254 0.746 23 H 0.108 0.892 24 H 0.136 0.864 25 H 0.138 0.862 26 H 0.123 0.877 27 H 0.129 0.871 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.349 0.651 32 H 0.348 0.652 33 H 0.050 0.950 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 -6.996 1.940 7.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.151 4.151 3 Si 0.754 3.246 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.593 4.593 8 H 0.058 0.942 9 C 0.108 3.892 10 H 0.011 0.989 11 C -0.051 4.051 12 C -0.171 4.171 13 C -0.155 4.155 14 C -0.165 4.165 15 C -0.170 4.170 16 C -0.103 4.103 17 N -0.143 5.143 18 C -0.109 4.109 19 C -0.030 4.030 20 N -0.352 5.352 21 C -0.180 4.180 22 H 0.063 0.937 23 H 0.126 0.874 24 H 0.154 0.846 25 H 0.156 0.844 26 H 0.141 0.859 27 H 0.147 0.853 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.068 0.932 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.245 -6.066 1.450 7.030 hybrid contribution 1.079 0.273 0.859 1.406 sum -2.165 -5.793 2.309 6.602 Atomic orbital electron populations 1.70180 1.05867 1.25673 1.44918 1.25327 0.95412 1.00346 0.94017 0.86139 0.79021 0.81349 0.78110 1.20310 1.20835 1.20827 1.20872 0.92951 0.91699 1.53739 0.94165 1.18707 0.88561 0.94010 0.87899 0.98898 1.20288 0.93701 0.94577 0.96487 1.21109 0.99559 1.02664 0.93773 1.21181 0.96388 1.01633 0.96252 1.21218 0.94931 1.01154 0.99191 1.21425 1.00434 1.01591 0.93538 1.21343 0.95809 0.96094 0.97098 1.69214 1.24884 1.19112 1.01078 1.23494 0.96036 0.97875 0.93539 1.22588 0.91820 0.96540 0.92024 1.58570 1.06057 1.16076 1.54456 1.24663 1.00570 0.93958 0.98803 0.93696 0.87406 0.84567 0.84414 0.85932 0.85343 0.92957 0.93083 0.87656 0.83665 0.83855 0.93171 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.72 9.57 21.45 0.21 -44.51 16 2 C 0.06 3.02 5.21 84.65 0.44 3.46 16 3 Si 0.93 43.49 29.55 68.60 2.03 45.51 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.55 -30.14 8.29 25.60 0.21 -29.93 16 8 H 0.04 2.23 7.83 -2.91 -0.02 2.21 16 9 C 0.22 10.57 1.52 43.42 0.07 10.64 16 10 H -0.01 -0.33 7.51 -2.39 -0.02 -0.35 16 11 C -0.05 -2.32 4.40 -19.87 -0.09 -2.40 16 12 C -0.15 -6.41 9.71 22.27 0.22 -6.20 16 13 C -0.14 -4.89 10.05 22.27 0.22 -4.67 16 14 C -0.15 -5.10 10.05 22.27 0.22 -4.87 16 15 C -0.15 -5.91 10.05 22.27 0.22 -5.69 16 16 C -0.08 -3.87 7.91 22.27 0.18 -3.70 16 17 N -0.42 -18.75 3.56 -910.70 -3.24 -21.99 16 18 C 0.02 0.86 6.99 83.58 0.58 1.44 16 19 C 0.08 2.74 5.43 45.39 0.25 2.98 16 20 N -0.82 -25.21 9.68 -167.68 -1.62 -26.84 16 21 C -0.05 -1.76 6.83 83.62 0.57 -1.19 16 22 H 0.25 13.30 8.31 -92.70 -0.77 12.53 16 23 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 24 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 25 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 26 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 27 H 0.13 6.41 5.98 -2.91 -0.02 6.39 16 28 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.05 2.10 7.77 -2.39 -0.02 2.08 16 30 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.35 8.41 9.08 -89.69 -0.81 7.59 16 32 H 0.35 12.07 8.71 -89.69 -0.78 11.29 16 33 H 0.05 1.83 7.70 -2.39 -0.02 1.81 16 34 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -57.86 279.64 -0.03 -57.88 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -0.49 Total: 30.07 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 3.10 Total: -40.13 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -4.66 Total: -93.34 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -57.86 -0.03 -57.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083635763.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.511 kcal (2) G-P(sol) polarization free energy of solvation -57.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds