Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47222 * 2 1 4 4 C 1.46897 * 111.00002 * 291.45366 * 3 2 1 5 5 C 1.50704 * 109.47007 * 288.61031 * 4 3 2 6 6 H 1.07992 * 120.00005 * 2.36621 * 5 4 3 7 7 C 1.37881 * 119.99903 * 182.37037 * 5 4 3 8 8 N 1.31516 * 119.99812 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00009 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47041 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47199 * 119.99623 * 9 7 5 12 12 H 1.48498 * 109.47389 * 239.99949 * 9 7 5 13 13 C 1.38459 * 111.00037 * 55.40762 * 3 2 1 14 14 N 1.32590 * 120.28291 * 256.36380 * 13 3 2 15 15 N 1.28265 * 122.20459 * 180.02562 * 14 13 3 16 16 C 1.31901 * 122.66937 * 0.02562 * 15 14 13 17 17 C 1.38454 * 120.19034 * 0.02562 * 16 15 14 18 18 C 1.40114 * 117.88611 * 359.97438 * 17 16 15 19 19 C 1.43198 * 121.18876 * 180.02562 * 18 17 16 20 20 N 3.69244 * 129.85791 * 85.12937 * 2 1 3 21 21 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47482 * 300.04753 * 1 2 3 23 23 H 1.09005 * 109.47147 * 60.04429 * 1 2 3 24 24 H 1.09004 * 109.47262 * 239.99825 * 2 1 3 25 25 H 1.08997 * 109.46681 * 120.00050 * 2 1 3 26 26 H 1.08994 * 109.47252 * 48.61428 * 4 3 2 27 27 H 1.09003 * 109.47542 * 168.61015 * 4 3 2 28 28 H 0.96999 * 119.99985 * 180.02562 * 8 7 5 29 29 H 1.07996 * 119.90423 * 179.97438 * 16 15 14 30 30 H 1.07989 * 121.05404 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7223 2.0485 -1.2764 5 6 2.6050 1.4783 -2.3566 6 1 3.2887 0.6745 -2.1269 7 6 2.5397 1.9829 -3.6381 8 7 1.7074 2.9621 -3.9176 9 14 3.6343 1.2767 -4.9768 10 1 4.4742 0.1918 -4.4085 11 1 2.7901 0.7280 -6.0684 12 1 4.5085 2.3482 -5.5180 13 6 1.4932 2.0974 1.0641 14 7 0.5111 2.9661 0.8666 15 7 -0.0033 3.6457 1.8250 16 6 0.4029 3.5343 3.0750 17 6 1.4241 2.6576 3.3996 18 6 1.9974 1.9072 2.3646 19 6 3.0576 0.9792 2.6207 20 7 3.8964 0.2407 2.8242 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5145 0.8895 23 1 -0.3634 0.5132 -0.8904 24 1 1.8934 -0.5139 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 0.6768 1.8835 -1.5367 27 1 1.9086 3.1183 -1.1819 28 1 1.6612 3.3169 -4.8192 29 1 -0.0620 4.1291 3.8472 30 1 1.7674 2.5549 4.4184 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123210338.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = 103.279665 kcal Electronic energy + Delta-G solvation = -15819.886806 eV Core-core repulsion = 13230.682756 eV Total energy + Delta-G solvation = -2589.204051 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.10256 -37.62017 -36.55548 -33.18031 -32.77136 -31.63484 -29.53909 -26.95658 -25.64125 -23.81420 -23.06289 -20.60691 -19.36305 -17.59706 -16.52313 -15.99399 -15.69351 -14.97515 -14.50402 -14.16553 -13.85669 -13.58145 -13.30462 -13.00015 -12.73415 -12.62701 -12.06113 -11.60033 -11.37400 -11.06060 -10.80729 -10.73896 -10.42596 -10.13680 -10.09002 -9.96653 -9.46051 -9.33388 -8.50491 -7.75932 -6.08619 -4.12405 0.40186 1.04157 2.67760 3.02979 3.27946 3.35740 3.39779 3.71905 3.78247 3.94512 4.33092 4.42569 4.63577 4.90245 5.07245 5.27263 5.42052 5.53279 5.57774 5.72491 5.78357 6.00738 6.16019 6.37930 6.57743 6.97382 7.24844 7.48926 7.60518 7.71935 7.97448 8.29090 8.86642 8.97764 9.51443 11.01365 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.029213 B = 0.007933 C = 0.007130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.245254 B = 3528.735157 C = 3925.917597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.066 3.934 3 N -0.476 5.476 4 C 0.195 3.805 5 C -0.520 4.520 6 H 0.064 0.936 7 C 0.061 3.939 8 N -0.888 5.888 9 Si 0.898 3.102 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.314 3.686 14 N -0.257 5.257 15 N -0.204 5.204 16 C -0.001 4.001 17 C -0.056 4.056 18 C -0.045 4.045 19 C 0.271 3.729 20 N -0.401 5.401 21 H 0.060 0.940 22 H 0.042 0.958 23 H 0.077 0.923 24 H 0.104 0.896 25 H 0.058 0.942 26 H 0.024 0.976 27 H 0.042 0.958 28 H 0.263 0.737 29 H 0.176 0.824 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.259 -1.589 13.264 13.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.059 4.059 3 N -0.194 5.194 4 C 0.072 3.928 5 C -0.559 4.559 6 H 0.082 0.918 7 C -0.142 4.142 8 N -0.527 5.527 9 Si 0.726 3.274 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.074 3.926 14 N -0.105 5.105 15 N -0.048 5.048 16 C -0.166 4.166 17 C -0.088 4.088 18 C -0.062 4.062 19 C -0.045 4.045 20 N -0.077 5.077 21 H 0.079 0.921 22 H 0.061 0.939 23 H 0.096 0.904 24 H 0.122 0.878 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.193 0.807 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.513 -1.952 12.314 12.718 hybrid contribution 0.577 -0.492 0.053 0.761 sum -1.935 -2.444 12.367 12.754 Atomic orbital electron populations 1.22417 0.97097 1.01945 1.02724 1.22134 0.93418 0.87093 1.03263 1.59623 1.51577 1.03199 1.05008 1.19931 0.97008 0.94767 0.81069 1.21122 1.22253 1.19547 0.92965 0.91775 1.24944 0.95673 0.94989 0.98577 1.69982 1.36383 1.25654 1.20656 0.86437 0.80381 0.79022 0.81573 1.19674 1.20941 1.20926 1.21906 0.87375 0.92756 0.90540 1.73765 1.06078 1.06537 1.24157 1.72771 1.20205 1.13716 0.98065 1.24082 0.96878 0.99067 0.96541 1.22409 0.94201 0.92588 0.99636 1.16802 0.96034 0.98787 0.94574 1.24853 0.92984 0.93200 0.93452 1.81200 1.09415 1.09117 1.07959 0.92137 0.93880 0.90437 0.87809 0.92335 0.95863 0.93998 0.92745 0.80688 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 9.31 37.16 0.35 -2.72 16 2 C 0.07 1.21 5.75 -3.83 -0.02 1.19 16 3 N -0.48 -9.98 4.22 -174.15 -0.73 -10.71 16 4 C 0.20 4.93 3.84 -4.98 -0.02 4.91 16 5 C -0.52 -14.17 8.50 -34.44 -0.29 -14.46 16 6 H 0.06 1.73 7.44 -52.49 -0.39 1.34 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 9 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.31 5.81 4.45 -154.76 -0.69 5.12 16 14 N -0.26 -4.97 9.82 31.40 0.31 -4.66 16 15 N -0.20 -3.31 11.47 30.51 0.35 -2.96 16 16 C 0.00 -0.01 11.29 -17.44 -0.20 -0.21 16 17 C -0.06 -0.60 9.97 -38.80 -0.39 -0.99 16 18 C -0.04 -0.66 5.73 -106.31 -0.61 -1.27 16 19 C 0.27 4.25 13.60 -22.47 -0.31 3.94 16 20 N -0.40 -6.80 18.54 41.84 0.78 -6.02 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.04 0.70 6.94 -51.93 -0.36 0.34 16 23 H 0.08 1.48 6.44 -51.93 -0.33 1.14 16 24 H 0.10 2.00 7.03 -51.93 -0.37 1.64 16 25 H 0.06 0.97 6.87 -51.93 -0.36 0.61 16 26 H 0.02 0.62 6.18 -51.93 -0.32 0.30 16 27 H 0.04 1.17 7.74 -51.93 -0.40 0.77 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 267.29 15.07 4.03 4.03 Total: -1.00 -31.02 267.29 -4.76 -35.79 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -2.93 Total: -3.68 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -2.27 Total: -2.88 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 1.44 Total: -49.51 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.02 -4.76 -35.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123210338.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.066 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds