Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47222 * 2 1 4 4 C 1.46897 * 111.00002 * 291.45366 * 3 2 1 5 5 C 1.50704 * 109.47007 * 288.61031 * 4 3 2 6 6 H 1.07992 * 120.00005 * 2.36621 * 5 4 3 7 7 C 1.37881 * 119.99903 * 182.37037 * 5 4 3 8 8 N 1.31516 * 119.99812 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00009 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47041 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47199 * 119.99623 * 9 7 5 12 12 H 1.48498 * 109.47389 * 239.99949 * 9 7 5 13 13 C 1.38459 * 111.00037 * 55.40762 * 3 2 1 14 14 N 1.32590 * 120.28291 * 256.36380 * 13 3 2 15 15 N 1.28265 * 122.20459 * 180.02562 * 14 13 3 16 16 C 1.31901 * 122.66937 * 0.02562 * 15 14 13 17 17 C 1.38454 * 120.19034 * 0.02562 * 16 15 14 18 18 C 1.40114 * 117.88611 * 359.97438 * 17 16 15 19 19 C 1.43198 * 121.18876 * 180.02562 * 18 17 16 20 20 N 3.69244 * 129.85791 * 85.12937 * 2 1 3 21 21 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47482 * 300.04753 * 1 2 3 23 23 H 1.09005 * 109.47147 * 60.04429 * 1 2 3 24 24 H 1.09004 * 109.47262 * 239.99825 * 2 1 3 25 25 H 1.08997 * 109.46681 * 120.00050 * 2 1 3 26 26 H 1.08994 * 109.47252 * 48.61428 * 4 3 2 27 27 H 1.09003 * 109.47542 * 168.61015 * 4 3 2 28 28 H 0.96999 * 119.99985 * 180.02562 * 8 7 5 29 29 H 1.07996 * 119.90423 * 179.97438 * 16 15 14 30 30 H 1.07989 * 121.05404 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7223 2.0485 -1.2764 5 6 2.6050 1.4783 -2.3566 6 1 3.2887 0.6745 -2.1269 7 6 2.5397 1.9829 -3.6381 8 7 1.7074 2.9621 -3.9176 9 14 3.6343 1.2767 -4.9768 10 1 4.4742 0.1918 -4.4085 11 1 2.7901 0.7280 -6.0684 12 1 4.5085 2.3482 -5.5180 13 6 1.4932 2.0974 1.0641 14 7 0.5111 2.9661 0.8666 15 7 -0.0033 3.6457 1.8250 16 6 0.4029 3.5343 3.0750 17 6 1.4241 2.6576 3.3996 18 6 1.9974 1.9072 2.3646 19 6 3.0576 0.9792 2.6207 20 7 3.8964 0.2407 2.8242 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5145 0.8895 23 1 -0.3634 0.5132 -0.8904 24 1 1.8934 -0.5139 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 0.6768 1.8835 -1.5367 27 1 1.9086 3.1183 -1.1819 28 1 1.6612 3.3169 -4.8192 29 1 -0.0620 4.1291 3.8472 30 1 1.7674 2.5549 4.4184 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123210338.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = 81.503602 kcal Electronic energy + Delta-G solvation = -15820.831087 eV Core-core repulsion = 13230.682756 eV Total energy + Delta-G solvation = -2590.148332 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.33429 -39.06962 -37.83071 -34.88493 -34.25837 -32.92407 -31.14302 -28.76033 -26.86084 -25.18456 -24.79631 -22.12995 -20.51721 -18.89548 -18.40023 -17.55631 -17.17075 -16.36496 -16.00013 -15.48949 -15.18954 -14.99172 -14.57960 -14.33698 -14.19617 -13.97126 -13.79069 -13.28028 -13.00633 -12.74111 -12.61645 -12.27040 -12.10565 -11.78566 -11.49894 -11.22738 -11.13915 -10.67717 -10.61060 -9.33467 -8.21300 -6.32857 -0.70483 -0.06548 1.40244 1.41095 1.45418 1.54068 1.84088 2.35240 2.53429 2.60152 2.71290 3.11606 3.21192 3.60229 3.86377 3.98808 4.05922 4.17071 4.40360 4.48970 4.66235 4.72346 4.89958 5.03791 5.13328 5.26866 5.38175 5.58962 5.92677 5.96173 6.27248 6.40709 6.79848 7.35593 7.75218 8.89539 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.029213 B = 0.007933 C = 0.007130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.245254 B = 3528.735157 C = 3925.917597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.066 3.934 3 N -0.489 5.489 4 C 0.223 3.777 5 C -0.533 4.533 6 H 0.063 0.937 7 C 0.008 3.992 8 N -0.926 5.926 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.275 1.275 12 H -0.280 1.280 13 C 0.289 3.711 14 N -0.306 5.306 15 N -0.241 5.241 16 C 0.024 3.976 17 C -0.018 4.018 18 C -0.053 4.053 19 C 0.287 3.713 20 N -0.427 5.427 21 H 0.089 0.911 22 H 0.046 0.954 23 H 0.044 0.956 24 H 0.086 0.914 25 H 0.079 0.921 26 H -0.002 1.002 27 H 0.003 0.997 28 H 0.265 0.735 29 H 0.232 0.768 30 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 -1.937 15.771 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.059 4.059 3 N -0.208 5.208 4 C 0.098 3.902 5 C -0.571 4.571 6 H 0.081 0.919 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.201 1.201 12 H -0.206 1.206 13 C 0.049 3.951 14 N -0.152 5.152 15 N -0.082 5.082 16 C -0.142 4.142 17 C -0.050 4.050 18 C -0.070 4.070 19 C -0.029 4.029 20 N -0.103 5.103 21 H 0.107 0.893 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.016 0.984 27 H 0.021 0.979 28 H 0.074 0.926 29 H 0.248 0.752 30 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -2.255 -2.295 14.834 15.178 hybrid contribution 0.411 -0.301 -0.487 0.705 sum -1.844 -2.596 14.346 14.695 Atomic orbital electron populations 1.22265 0.96091 1.03250 1.01251 1.22154 0.94304 0.86168 1.03262 1.59572 1.53235 1.04068 1.03896 1.19300 0.95031 0.92707 0.83186 1.21454 1.22296 1.19429 0.93949 0.91886 1.25847 0.97009 0.95247 1.01031 1.70114 1.38075 1.27076 1.21315 0.85357 0.78504 0.78373 0.78512 1.18883 1.20099 1.20563 1.21854 0.88695 0.93419 0.91177 1.73661 1.07447 1.07749 1.26334 1.72664 1.21198 1.14511 0.99831 1.25014 0.95616 0.97896 0.95668 1.23077 0.91756 0.89222 1.00911 1.16878 0.96308 0.99734 0.94105 1.24894 0.92592 0.92732 0.92695 1.81221 1.10204 1.09952 1.08903 0.89269 0.93464 0.93689 0.89560 0.90309 0.98393 0.97902 0.92568 0.75198 0.76967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.79 9.31 71.98 0.67 -5.12 16 2 C 0.07 2.47 5.75 86.30 0.50 2.97 16 3 N -0.49 -21.20 4.22 -704.89 -2.97 -24.18 16 4 C 0.22 11.92 3.84 85.56 0.33 12.25 16 5 C -0.53 -30.16 8.50 25.60 0.22 -29.94 16 6 H 0.06 3.49 7.44 -2.91 -0.02 3.47 16 7 C 0.01 0.44 5.46 84.66 0.46 0.91 16 8 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 9 Si 0.97 44.44 29.54 68.60 2.03 46.46 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 13 C 0.29 10.78 4.45 133.60 0.60 11.37 16 14 N -0.31 -12.09 9.82 -54.58 -0.54 -12.63 16 15 N -0.24 -7.52 11.47 -57.38 -0.66 -8.18 16 16 C 0.02 0.44 11.29 84.73 0.96 1.40 16 17 C -0.02 -0.29 9.97 22.78 0.23 -0.07 16 18 C -0.05 -1.47 5.73 -20.96 -0.12 -1.59 16 19 C 0.29 8.39 13.60 88.33 1.20 9.59 16 20 N -0.43 -13.76 18.54 19.00 0.35 -13.41 16 21 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 22 H 0.05 1.54 6.94 -2.39 -0.02 1.52 16 23 H 0.04 1.81 6.44 -2.38 -0.02 1.80 16 24 H 0.09 3.45 7.03 -2.39 -0.02 3.44 16 25 H 0.08 2.57 6.87 -2.39 -0.02 2.56 16 26 H 0.00 -0.10 6.18 -2.39 -0.01 -0.11 16 27 H 0.00 0.17 7.74 -2.39 -0.02 0.15 16 28 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.23 1.53 8.06 -2.91 -0.02 1.51 16 30 H 0.21 1.10 8.06 -2.92 -0.02 1.07 16 Total: -1.00 -72.93 267.29 4.69 -68.24 By element: Atomic # 1 Polarization: -3.50 SS G_CDS: 1.16 Total: -2.34 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 5.03 Total: 1.76 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -3.53 Total: -114.12 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -72.93 4.69 -68.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123210338.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.739 kcal (2) G-P(sol) polarization free energy of solvation -72.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds