Wall clock time and date at job start Mon Mar 30 2020 03:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47024 * 2 1 4 4 H 1.08998 * 109.47501 * 54.84493 * 3 2 1 5 5 C 1.50703 * 109.47049 * 174.85086 * 3 2 1 6 6 H 1.07995 * 120.00262 * 119.99944 * 5 3 2 7 7 C 1.37878 * 119.99667 * 299.99559 * 5 3 2 8 8 N 1.31522 * 119.99869 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00003 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47318 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47237 * 120.00084 * 9 7 5 12 12 H 1.48499 * 109.47061 * 240.00150 * 9 7 5 13 13 N 1.46504 * 109.46860 * 294.84514 * 3 2 1 14 14 C 1.38568 * 119.99829 * 157.77469 * 13 3 2 15 15 C 1.39750 * 119.97919 * 355.50054 * 14 13 3 16 16 N 1.31554 * 120.03003 * 179.97438 * 15 14 13 17 17 C 1.33299 * 119.99402 * 359.97438 * 16 15 14 18 18 C 1.43199 * 120.01925 * 180.02562 * 17 16 15 19 19 N 8.85048 * 88.59627 * 350.15777 * 2 1 3 20 20 C 1.39519 * 119.96096 * 0.02562 * 17 16 15 21 21 N 1.32041 * 119.96665 * 359.97438 * 20 17 16 22 22 H 1.09003 * 109.46833 * 55.47307 * 1 2 3 23 23 H 1.08995 * 109.47147 * 175.46723 * 1 2 3 24 24 H 1.08997 * 109.46829 * 295.47043 * 1 2 3 25 25 H 1.08997 * 109.46917 * 239.99787 * 2 1 3 26 26 H 1.09002 * 109.46894 * 119.99849 * 2 1 3 27 27 H 0.96998 * 119.99411 * 179.97438 * 8 7 5 28 28 H 0.96998 * 120.00507 * 337.77006 * 13 3 2 29 29 H 1.08000 * 119.98996 * 0.26401 * 15 14 13 30 30 H 1.07997 * 120.01590 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9823 0.8402 5 6 3.5417 1.4444 0.1275 6 1 4.1489 1.8883 -0.6475 7 6 4.1402 0.8795 1.2337 8 7 3.4007 0.3386 2.1773 9 14 6.0014 0.8825 1.3922 10 1 6.5982 1.5475 0.2061 11 1 6.3925 1.6191 2.6210 12 1 6.4933 -0.5162 1.4759 13 7 1.6556 2.0963 -1.2534 14 6 1.5812 3.4784 -1.3195 15 6 1.7808 4.2443 -0.1677 16 7 1.7109 5.5565 -0.2293 17 6 1.4502 6.1561 -1.3910 18 6 1.3745 7.5845 -1.4588 19 7 1.3132 8.7176 -1.5124 20 6 1.2510 5.3912 -2.5406 21 7 1.3215 4.0742 -2.4770 22 1 -0.3633 0.5825 -0.8467 23 1 -0.3633 -1.0244 -0.0812 24 1 -0.3633 0.4419 0.9278 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8219 -0.0591 2.9553 28 1 1.4532 1.5618 -2.0371 29 1 1.9971 3.7590 0.7726 30 1 1.0401 5.8761 -3.4823 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129933271.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:39 Heat of formation + Delta-G solvation = 73.167838 kcal Electronic energy + Delta-G solvation = -15402.642923 eV Core-core repulsion = 12812.133126 eV Total energy + Delta-G solvation = -2590.509797 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.66800 -37.04652 -36.10533 -34.04731 -32.89949 -31.70038 -29.62702 -27.12053 -24.41449 -24.19489 -22.85560 -20.32119 -19.16097 -17.65251 -17.01737 -16.57329 -15.03265 -14.83225 -14.56916 -14.23011 -13.85648 -13.37656 -12.96798 -12.86351 -12.67563 -12.47720 -11.95142 -11.52050 -11.30307 -11.23042 -11.01973 -10.92011 -10.39807 -10.25117 -10.16232 -10.01739 -9.19031 -8.84444 -8.65863 -7.32266 -6.30462 -4.43066 0.99840 1.52699 2.79118 3.14856 3.19050 3.24915 3.28561 3.55635 3.97756 4.21333 4.28526 4.71253 4.94811 4.98212 5.10376 5.49664 5.88785 5.92212 5.97932 6.16810 6.45762 6.56707 6.67385 6.76846 7.03033 7.26637 7.43882 7.59995 7.70742 7.89315 7.92878 7.97540 8.34907 8.64460 9.26728 10.71086 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.024865 B = 0.007452 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.798959 B = 3756.431610 C = 4482.895349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.265 3.735 4 H 0.050 0.950 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.666 5.666 14 C 0.397 3.603 15 C 0.021 3.979 16 N -0.375 5.375 17 C 0.011 3.989 18 C 0.295 3.705 19 N -0.431 5.431 20 C 0.168 3.832 21 N -0.528 5.528 22 H 0.038 0.962 23 H 0.039 0.961 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.113 0.887 27 H 0.267 0.733 28 H 0.397 0.603 29 H 0.186 0.814 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.181 0.790 -5.162 6.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C 0.164 3.836 4 H 0.068 0.932 5 C -0.576 4.576 6 H 0.081 0.919 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.726 3.274 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.288 5.288 14 C 0.151 3.849 15 C -0.156 4.156 16 N -0.089 5.089 17 C -0.129 4.129 18 C -0.022 4.022 19 N -0.109 5.109 20 C 0.002 3.998 21 N -0.251 5.251 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.131 0.869 27 H 0.077 0.923 28 H 0.232 0.768 29 H 0.203 0.797 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.199 2.272 -4.859 6.812 hybrid contribution 1.038 -0.793 -0.129 1.313 sum -3.161 1.478 -4.988 6.088 Atomic orbital electron populations 1.21861 0.98507 0.99833 1.00602 1.21887 0.92351 0.98595 1.03901 1.19172 0.95014 0.89893 0.79538 0.93212 1.21484 0.90673 1.39268 1.06182 0.91863 1.24882 0.98769 0.94437 0.95246 1.69832 1.35314 1.37578 1.09450 0.86414 0.84715 0.77891 0.78359 1.19712 1.20658 1.20791 1.45599 1.66018 1.00782 1.16432 1.19744 0.87326 0.87786 0.90043 1.23433 1.04257 0.88040 0.99877 1.68091 1.04976 1.10979 1.24875 1.16791 1.16452 0.86800 0.92817 1.24826 0.92725 0.91415 0.93194 1.81186 1.10518 1.11491 1.07730 1.23185 0.90276 0.88754 0.97590 1.68147 1.21403 1.10195 1.25365 0.94268 0.94189 0.93326 0.93875 0.86945 0.92318 0.76774 0.79736 0.81568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.85 37.16 0.37 -2.06 16 2 C -0.13 -2.47 5.30 -26.73 -0.14 -2.61 16 3 C 0.27 5.34 1.67 -69.08 -0.12 5.23 16 4 H 0.05 1.07 6.43 -51.93 -0.33 0.74 16 5 C -0.54 -12.49 8.66 -34.44 -0.30 -12.79 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.07 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.88 -21.70 11.29 55.43 0.63 -21.07 16 9 Si 0.90 19.38 29.54 -169.99 -5.02 14.36 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.67 -11.68 4.63 -54.92 -0.25 -11.93 16 14 C 0.40 6.93 7.60 -154.91 -1.18 5.75 16 15 C 0.02 0.38 10.33 -17.11 -0.18 0.20 16 16 N -0.38 -6.64 10.41 -10.72 -0.11 -6.75 16 17 C 0.01 0.17 6.58 -84.83 -0.56 -0.39 16 18 C 0.29 4.61 15.56 -22.47 -0.35 4.26 16 19 N -0.43 -7.22 18.54 41.84 0.78 -6.44 16 20 C 0.17 2.34 10.92 -16.98 -0.19 2.16 16 21 N -0.53 -8.46 10.52 -11.93 -0.13 -8.59 16 22 H 0.04 0.59 7.62 -51.93 -0.40 0.19 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.11 2.47 5.95 -51.93 -0.31 2.17 16 27 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 28 H 0.40 6.38 8.68 -40.82 -0.35 6.03 16 29 H 0.19 3.45 6.18 -52.49 -0.32 3.13 16 30 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 271.47 15.07 4.09 4.09 Total: -1.00 -24.70 271.47 -5.70 -30.41 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -2.95 Total: 4.59 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -2.73 Total: 1.34 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.91 Total: -54.78 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -24.70 -5.70 -30.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129933271.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.574 kcal (2) G-P(sol) polarization free energy of solvation -24.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds