Wall clock time and date at job start Mon Mar 30 2020 03:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47024 * 2 1 4 4 H 1.08998 * 109.47501 * 54.84493 * 3 2 1 5 5 C 1.50703 * 109.47049 * 174.85086 * 3 2 1 6 6 H 1.07995 * 120.00262 * 119.99944 * 5 3 2 7 7 C 1.37878 * 119.99667 * 299.99559 * 5 3 2 8 8 N 1.31522 * 119.99869 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00003 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47318 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47237 * 120.00084 * 9 7 5 12 12 H 1.48499 * 109.47061 * 240.00150 * 9 7 5 13 13 N 1.46504 * 109.46860 * 294.84514 * 3 2 1 14 14 C 1.38568 * 119.99829 * 157.77469 * 13 3 2 15 15 C 1.39750 * 119.97919 * 355.50054 * 14 13 3 16 16 N 1.31554 * 120.03003 * 179.97438 * 15 14 13 17 17 C 1.33299 * 119.99402 * 359.97438 * 16 15 14 18 18 C 1.43199 * 120.01925 * 180.02562 * 17 16 15 19 19 N 8.85048 * 88.59627 * 350.15777 * 2 1 3 20 20 C 1.39519 * 119.96096 * 0.02562 * 17 16 15 21 21 N 1.32041 * 119.96665 * 359.97438 * 20 17 16 22 22 H 1.09003 * 109.46833 * 55.47307 * 1 2 3 23 23 H 1.08995 * 109.47147 * 175.46723 * 1 2 3 24 24 H 1.08997 * 109.46829 * 295.47043 * 1 2 3 25 25 H 1.08997 * 109.46917 * 239.99787 * 2 1 3 26 26 H 1.09002 * 109.46894 * 119.99849 * 2 1 3 27 27 H 0.96998 * 119.99411 * 179.97438 * 8 7 5 28 28 H 0.96998 * 120.00507 * 337.77006 * 13 3 2 29 29 H 1.08000 * 119.98996 * 0.26401 * 15 14 13 30 30 H 1.07997 * 120.01590 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9823 0.8402 5 6 3.5417 1.4444 0.1275 6 1 4.1489 1.8883 -0.6475 7 6 4.1402 0.8795 1.2337 8 7 3.4007 0.3386 2.1773 9 14 6.0014 0.8825 1.3922 10 1 6.5982 1.5475 0.2061 11 1 6.3925 1.6191 2.6210 12 1 6.4933 -0.5162 1.4759 13 7 1.6556 2.0963 -1.2534 14 6 1.5812 3.4784 -1.3195 15 6 1.7808 4.2443 -0.1677 16 7 1.7109 5.5565 -0.2293 17 6 1.4502 6.1561 -1.3910 18 6 1.3745 7.5845 -1.4588 19 7 1.3132 8.7176 -1.5124 20 6 1.2510 5.3912 -2.5406 21 7 1.3215 4.0742 -2.4770 22 1 -0.3633 0.5825 -0.8467 23 1 -0.3633 -1.0244 -0.0812 24 1 -0.3633 0.4419 0.9278 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8219 -0.0591 2.9553 28 1 1.4532 1.5618 -2.0371 29 1 1.9971 3.7590 0.7726 30 1 1.0401 5.8761 -3.4823 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129933271.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:39 Heat of formation + Delta-G solvation = 58.799158 kcal Electronic energy + Delta-G solvation = -15403.265996 eV Core-core repulsion = 12812.133126 eV Total energy + Delta-G solvation = -2591.132870 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.99165 -38.49524 -37.45987 -35.45049 -34.46215 -33.22645 -30.97331 -28.76045 -25.75875 -25.67929 -24.31872 -21.83503 -20.47828 -19.03197 -18.60815 -18.11863 -16.68812 -16.20894 -15.94682 -15.55020 -15.25784 -14.95169 -14.37888 -14.20407 -13.99888 -13.80812 -13.41742 -13.18578 -12.95462 -12.60935 -12.55845 -12.42282 -12.10351 -11.78479 -11.64880 -11.53065 -10.75392 -10.47919 -10.14322 -8.75212 -8.10154 -6.28854 -0.28136 0.20835 1.41427 1.47813 1.51166 1.54582 1.90227 2.17559 2.44777 2.68157 2.97827 3.14240 3.51808 3.62289 3.80083 4.22022 4.49671 4.58390 4.70200 4.76180 5.05169 5.11142 5.29112 5.35015 5.55688 5.68683 5.78098 6.02182 6.22235 6.31139 6.53922 6.62148 6.79867 7.03599 7.42924 8.87180 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.024865 B = 0.007452 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.798959 B = 3756.431610 C = 4482.895349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.275 3.725 4 H 0.034 0.966 5 C -0.542 4.542 6 H 0.049 0.951 7 C 0.033 3.967 8 N -0.903 5.903 9 Si 0.945 3.055 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.665 5.665 14 C 0.393 3.607 15 C 0.004 3.996 16 N -0.390 5.390 17 C 0.012 3.988 18 C 0.310 3.690 19 N -0.446 5.446 20 C 0.186 3.814 21 N -0.525 5.525 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.266 0.734 28 H 0.406 0.594 29 H 0.169 0.831 30 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.692 1.230 -6.696 8.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C 0.172 3.828 4 H 0.051 0.949 5 C -0.580 4.580 6 H 0.067 0.933 7 C -0.168 4.168 8 N -0.541 5.541 9 Si 0.772 3.228 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.205 1.205 13 N -0.288 5.288 14 C 0.147 3.853 15 C -0.172 4.172 16 N -0.105 5.105 17 C -0.129 4.129 18 C -0.006 4.006 19 N -0.124 5.124 20 C 0.020 3.980 21 N -0.249 5.249 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.102 0.898 27 H 0.076 0.924 28 H 0.242 0.758 29 H 0.186 0.814 30 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.714 2.702 -6.398 8.393 hybrid contribution 1.181 -0.803 0.291 1.458 sum -3.532 1.898 -6.107 7.306 Atomic orbital electron populations 1.21744 0.96011 1.01186 1.00833 1.21715 0.94529 0.97334 1.02621 1.18843 0.93182 0.90554 0.80208 0.94880 1.21674 0.92409 1.38432 1.05515 0.93274 1.25394 1.01333 0.94680 0.95385 1.69920 1.36139 1.38343 1.09742 0.85711 0.81720 0.77692 0.77710 1.20182 1.20974 1.20490 1.45256 1.66673 1.00993 1.15868 1.19728 0.87502 0.87642 0.90388 1.23153 1.06065 0.88259 0.99730 1.67991 1.05195 1.10997 1.26309 1.16956 1.16162 0.86839 0.92896 1.24671 0.92177 0.91117 0.92663 1.81215 1.11043 1.11902 1.08272 1.23866 0.87672 0.87786 0.98639 1.68257 1.21165 1.11093 1.24337 0.92913 0.92433 0.93995 0.93508 0.89796 0.92437 0.75771 0.81375 0.76936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 9.85 71.98 0.71 -3.63 16 2 C -0.12 -4.68 5.30 30.60 0.16 -4.52 16 3 C 0.27 11.13 1.67 44.25 0.07 11.20 16 4 H 0.03 1.47 6.43 -2.39 -0.02 1.46 16 5 C -0.54 -25.42 8.66 25.60 0.22 -25.20 16 6 H 0.05 2.40 7.81 -2.91 -0.02 2.38 16 7 C 0.03 1.62 5.29 84.65 0.45 2.07 16 8 N -0.90 -44.98 11.29 21.45 0.24 -44.74 16 9 Si 0.94 39.99 29.54 68.60 2.03 42.02 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.66 -22.76 4.63 -327.67 -1.52 -24.28 16 14 C 0.39 13.26 7.60 133.26 1.01 14.27 16 15 C 0.00 0.13 10.33 85.10 0.88 1.01 16 16 N -0.39 -13.51 10.41 -187.83 -1.96 -15.46 16 17 C 0.01 0.34 6.58 40.48 0.27 0.60 16 18 C 0.31 9.00 15.56 88.33 1.37 10.38 16 19 N -0.45 -14.03 18.54 19.00 0.35 -13.68 16 20 C 0.19 4.57 10.92 84.97 0.93 5.50 16 21 N -0.53 -15.49 10.52 -191.65 -2.02 -17.51 16 22 H 0.05 1.48 7.62 -2.39 -0.02 1.46 16 23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 3.73 5.95 -2.39 -0.01 3.72 16 27 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 28 H 0.41 12.43 8.68 -92.71 -0.80 11.63 16 29 H 0.17 6.54 6.18 -2.91 -0.02 6.52 16 30 H 0.21 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -52.01 271.47 3.58 -48.42 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.38 Total: 13.54 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 6.07 Total: 11.68 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -4.90 Total: -115.66 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -52.01 3.58 -48.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129933271.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.223 kcal (2) G-P(sol) polarization free energy of solvation -52.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds