Wall clock time and date at job start Mon Mar 30 2020 03:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37879 * 120.37778 * 2 1 4 4 N 1.31976 * 120.94236 * 179.74706 * 3 2 1 5 5 C 1.32636 * 121.80470 * 0.25648 * 4 3 2 6 6 N 1.38879 * 119.66823 * 180.02562 * 5 4 3 7 7 C 1.36917 * 119.99619 * 185.00025 * 6 5 4 8 8 H 1.08001 * 120.00296 * 20.64599 * 7 6 5 9 9 C 1.38811 * 120.00000 * 200.64794 * 7 6 5 10 10 N 1.31569 * 119.99818 * 19.10255 * 9 7 6 11 11 Si 1.86801 * 120.00119 * 199.10958 * 9 7 6 12 12 H 1.48495 * 109.47286 * 59.99600 * 11 9 7 13 13 H 1.48497 * 109.47173 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47054 * 299.99745 * 11 9 7 15 15 C 1.46496 * 120.00130 * 5.00079 * 6 5 4 16 16 C 1.47203 * 109.47277 * 84.06107 * 15 6 5 17 17 N 6.00282 * 145.70789 * 51.36448 * 2 1 3 18 18 C 1.38875 * 120.65691 * 359.97438 * 5 4 3 19 19 C 1.39184 * 118.99777 * 0.02666 * 18 5 4 20 20 N 1.39213 * 120.82274 * 179.97438 * 19 18 5 21 21 H 1.08996 * 109.47408 * 89.99142 * 1 2 3 22 22 H 1.08998 * 109.47154 * 209.99757 * 1 2 3 23 23 H 1.09005 * 109.46941 * 329.99557 * 1 2 3 24 24 H 1.08000 * 119.52710 * 0.02668 * 3 2 1 25 25 H 0.97007 * 120.00059 * 180.02562 * 10 9 7 26 26 H 1.09006 * 109.47224 * 204.05954 * 15 6 5 27 27 H 1.08995 * 109.47519 * 324.06152 * 15 6 5 28 28 H 1.07999 * 120.50061 * 180.02562 * 18 5 4 29 29 H 0.97003 * 119.99844 * 359.97438 * 20 19 18 30 30 H 0.96998 * 119.99658 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1895 0.0000 4 7 3.5240 1.2025 0.0050 5 6 4.2341 0.0822 0.0052 6 7 5.6213 0.1477 0.0111 7 6 6.3612 -0.9997 -0.0921 8 1 5.9166 -1.8938 -0.5036 9 6 7.6827 -1.0139 0.3323 10 7 8.1184 -0.0871 1.1583 11 14 8.8427 -2.3488 -0.2695 12 1 8.9419 -2.2880 -1.7499 13 1 10.1874 -2.1410 0.3252 14 1 8.3210 -3.6783 0.1374 15 6 6.2930 1.4444 0.1277 16 6 6.3903 1.8207 1.5474 17 7 6.4664 2.1116 2.6418 18 6 3.6042 -1.1554 0.0005 19 6 2.2132 -1.2046 -0.0048 20 7 1.5426 -2.4245 -0.0101 21 1 -0.3634 0.0002 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6627 2.1239 0.0004 25 1 9.0421 -0.0968 1.4545 26 1 7.2935 1.3750 -0.2992 27 1 5.7202 2.2000 -0.4100 28 1 4.1849 -2.0660 0.0011 29 1 2.0451 -3.2542 -0.0104 30 1 0.5728 -2.4448 -0.0134 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132982156.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:43 Heat of formation + Delta-G solvation = 76.793005 kcal Electronic energy + Delta-G solvation = -15743.161645 eV Core-core repulsion = 13152.809047 eV Total energy + Delta-G solvation = -2590.352598 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.36756 -36.85121 -34.76376 -34.27859 -32.24768 -30.87939 -29.29639 -27.16513 -26.22400 -23.58862 -22.11076 -20.33082 -18.03836 -17.25962 -16.55615 -16.08455 -15.05431 -14.49384 -14.21787 -13.92924 -13.65549 -13.19708 -12.89256 -12.51641 -12.47576 -11.95506 -11.85649 -11.53553 -11.27353 -11.15095 -10.81588 -10.74396 -10.52927 -10.40483 -10.15902 -9.57964 -8.61751 -8.34391 -7.28110 -6.92648 -6.52008 -3.92828 2.35470 2.63320 3.11632 3.15418 3.17384 3.77141 4.09094 4.31648 4.36329 4.68178 4.95662 5.06595 5.49587 5.59762 5.65744 5.82112 6.04691 6.08773 6.33101 6.47591 6.52342 6.62956 6.68023 6.93553 7.11082 7.25432 7.34783 7.84718 8.08326 8.23090 8.39599 9.00206 9.02587 9.13083 9.64702 10.50472 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.027020 B = 0.008920 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.011862 B = 3138.332720 C = 3937.523729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.322 4.322 3 C 0.187 3.813 4 N -0.592 5.592 5 C 0.402 3.598 6 N -0.427 5.427 7 C -0.310 4.310 8 H 0.103 0.897 9 C 0.030 3.970 10 N -0.869 5.869 11 Si 0.931 3.069 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.241 3.759 16 C 0.259 3.741 17 N -0.488 5.488 18 C -0.317 4.317 19 C 0.282 3.718 20 N -0.875 5.875 21 H 0.046 0.954 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.135 0.865 25 H 0.275 0.725 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.123 0.877 29 H 0.394 0.606 30 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.265 -2.437 -5.614 10.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.334 4.334 3 C 0.024 3.976 4 N -0.314 5.314 5 C 0.165 3.835 6 N -0.120 5.120 7 C -0.438 4.438 8 H 0.121 0.879 9 C -0.176 4.176 10 N -0.504 5.504 11 Si 0.757 3.243 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.199 1.199 15 C 0.114 3.886 16 C -0.059 4.059 17 N -0.168 5.168 18 C -0.349 4.349 19 C 0.170 3.830 20 N -0.415 5.415 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.153 0.847 25 H 0.086 0.914 26 H 0.133 0.867 27 H 0.110 0.890 28 H 0.141 0.859 29 H 0.221 0.779 30 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.091 -1.136 -3.888 8.167 hybrid contribution 0.074 -2.068 -0.475 2.123 sum -7.017 -3.204 -4.363 8.862 Atomic orbital electron populations 1.20171 0.92367 1.00691 1.00025 1.19631 0.95500 0.92830 1.25436 1.21693 0.88876 0.95727 0.91283 1.67128 1.07762 1.29661 1.26804 1.18114 0.85116 0.88440 0.91863 1.42277 0.99622 1.05182 1.64873 1.19562 0.93235 0.91174 1.39807 0.87938 1.25330 0.98516 0.98756 0.94966 1.69922 1.17736 1.34986 1.27803 0.85920 0.78964 0.80307 0.79114 1.19644 1.20860 1.19886 1.18492 0.99816 0.85852 0.84465 1.29272 0.90312 0.90786 0.95500 1.80780 1.11652 1.11719 1.12688 1.20477 0.91707 0.98228 1.24455 1.17436 0.90896 0.85393 0.89238 1.42325 1.08576 1.05232 1.85413 0.93558 0.93808 0.92810 0.84735 0.91424 0.86690 0.89049 0.85877 0.77873 0.77971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 9.62 36.01 0.35 -0.63 16 2 C -0.32 -5.59 5.92 -104.23 -0.62 -6.20 16 3 C 0.19 3.49 10.84 -17.62 -0.19 3.30 16 4 N -0.59 -12.87 9.17 -12.52 -0.11 -12.99 16 5 C 0.40 9.26 7.29 -155.04 -1.13 8.14 16 6 N -0.43 -10.20 2.69 -118.22 -0.32 -10.51 16 7 C -0.31 -7.52 8.97 -15.07 -0.14 -7.66 16 8 H 0.10 2.40 6.25 -52.49 -0.33 2.07 16 9 C 0.03 0.71 4.90 -17.45 -0.09 0.63 16 10 N -0.87 -22.15 9.44 55.49 0.52 -21.63 16 11 Si 0.93 18.88 29.59 -169.99 -5.03 13.85 16 12 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 13 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 15 C 0.24 5.39 5.12 -6.83 -0.03 5.35 16 16 C 0.26 6.43 13.49 -20.79 -0.28 6.15 16 17 N -0.49 -12.86 18.53 42.11 0.78 -12.08 16 18 C -0.32 -6.72 9.15 -38.99 -0.36 -7.08 16 19 C 0.28 5.11 6.79 -83.64 -0.57 4.55 16 20 N -0.88 -12.02 8.99 32.52 0.29 -11.73 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.04 0.51 6.67 -51.93 -0.35 0.17 16 23 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 24 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 25 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.12 2.54 6.59 -51.93 -0.34 2.19 16 27 H 0.09 1.83 7.49 -51.93 -0.39 1.44 16 28 H 0.12 2.61 6.22 -52.49 -0.33 2.28 16 29 H 0.39 4.83 8.86 -40.82 -0.36 4.47 16 30 H 0.39 4.43 6.97 -40.82 -0.28 4.14 16 LS Contribution 263.48 15.07 3.97 3.97 Total: -1.00 -29.15 263.48 -5.73 -34.88 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -2.78 Total: 9.72 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -3.05 Total: 6.53 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: 1.16 Total: -68.94 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.15 -5.73 -34.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132982156.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.671 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds