Wall clock time and date at job start Mon Mar 30 2020 03:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37879 * 120.37778 * 2 1 4 4 N 1.31976 * 120.94236 * 179.74706 * 3 2 1 5 5 C 1.32636 * 121.80470 * 0.25648 * 4 3 2 6 6 N 1.38879 * 119.66823 * 180.02562 * 5 4 3 7 7 C 1.36917 * 119.99619 * 185.00025 * 6 5 4 8 8 H 1.08001 * 120.00296 * 20.64599 * 7 6 5 9 9 C 1.38811 * 120.00000 * 200.64794 * 7 6 5 10 10 N 1.31569 * 119.99818 * 19.10255 * 9 7 6 11 11 Si 1.86801 * 120.00119 * 199.10958 * 9 7 6 12 12 H 1.48495 * 109.47286 * 59.99600 * 11 9 7 13 13 H 1.48497 * 109.47173 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47054 * 299.99745 * 11 9 7 15 15 C 1.46496 * 120.00130 * 5.00079 * 6 5 4 16 16 C 1.47203 * 109.47277 * 84.06107 * 15 6 5 17 17 N 6.00282 * 145.70789 * 51.36448 * 2 1 3 18 18 C 1.38875 * 120.65691 * 359.97438 * 5 4 3 19 19 C 1.39184 * 118.99777 * 0.02666 * 18 5 4 20 20 N 1.39213 * 120.82274 * 179.97438 * 19 18 5 21 21 H 1.08996 * 109.47408 * 89.99142 * 1 2 3 22 22 H 1.08998 * 109.47154 * 209.99757 * 1 2 3 23 23 H 1.09005 * 109.46941 * 329.99557 * 1 2 3 24 24 H 1.08000 * 119.52710 * 0.02668 * 3 2 1 25 25 H 0.97007 * 120.00059 * 180.02562 * 10 9 7 26 26 H 1.09006 * 109.47224 * 204.05954 * 15 6 5 27 27 H 1.08995 * 109.47519 * 324.06152 * 15 6 5 28 28 H 1.07999 * 120.50061 * 180.02562 * 18 5 4 29 29 H 0.97003 * 119.99844 * 359.97438 * 20 19 18 30 30 H 0.96998 * 119.99658 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1895 0.0000 4 7 3.5240 1.2025 0.0050 5 6 4.2341 0.0822 0.0052 6 7 5.6213 0.1477 0.0111 7 6 6.3612 -0.9997 -0.0921 8 1 5.9166 -1.8938 -0.5036 9 6 7.6827 -1.0139 0.3323 10 7 8.1184 -0.0871 1.1583 11 14 8.8427 -2.3488 -0.2695 12 1 8.9419 -2.2880 -1.7499 13 1 10.1874 -2.1410 0.3252 14 1 8.3210 -3.6783 0.1374 15 6 6.2930 1.4444 0.1277 16 6 6.3903 1.8207 1.5474 17 7 6.4664 2.1116 2.6418 18 6 3.6042 -1.1554 0.0005 19 6 2.2132 -1.2046 -0.0048 20 7 1.5426 -2.4245 -0.0101 21 1 -0.3634 0.0002 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6627 2.1239 0.0004 25 1 9.0421 -0.0968 1.4545 26 1 7.2935 1.3750 -0.2992 27 1 5.7202 2.2000 -0.4100 28 1 4.1849 -2.0660 0.0011 29 1 2.0451 -3.2542 -0.0104 30 1 0.5728 -2.4448 -0.0134 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132982156.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:43 Heat of formation + Delta-G solvation = 58.583889 kcal Electronic energy + Delta-G solvation = -15743.951252 eV Core-core repulsion = 13152.809047 eV Total energy + Delta-G solvation = -2591.142205 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.91632 -38.51119 -36.57432 -35.83991 -33.88803 -32.34861 -30.82471 -28.83265 -27.71615 -25.20341 -23.60049 -21.86502 -19.71526 -18.88005 -17.96791 -17.86648 -16.62776 -16.05479 -15.79847 -15.43865 -15.12991 -14.77797 -14.42315 -14.19149 -14.04829 -13.55739 -13.22880 -13.08226 -12.95076 -12.78878 -12.36369 -12.23511 -12.16671 -12.05985 -11.86856 -11.26230 -10.33520 -9.91383 -8.74444 -8.49212 -8.27952 -5.76149 0.81720 1.10618 1.48880 1.53807 1.59653 1.99625 2.33150 2.41322 2.95513 3.05340 3.31679 3.40722 3.81539 4.06171 4.44662 4.53602 4.65984 4.82649 4.88325 5.01348 5.06595 5.17741 5.27947 5.43499 5.45960 5.68564 5.84019 6.20981 6.65458 6.70455 7.10173 7.12393 7.33278 7.40057 7.97604 8.72080 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.027020 B = 0.008920 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.011862 B = 3138.332720 C = 3937.523729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.311 4.311 3 C 0.170 3.830 4 N -0.613 5.613 5 C 0.384 3.616 6 N -0.452 5.452 7 C -0.320 4.320 8 H 0.103 0.897 9 C -0.011 4.011 10 N -0.904 5.904 11 Si 0.995 3.005 12 H -0.262 1.262 13 H -0.290 1.290 14 H -0.273 1.273 15 C 0.248 3.752 16 C 0.271 3.729 17 N -0.526 5.526 18 C -0.340 4.340 19 C 0.282 3.718 20 N -0.855 5.855 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.166 0.834 25 H 0.269 0.731 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.403 0.597 30 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.638 -3.285 -6.526 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.323 4.323 3 C 0.010 3.990 4 N -0.336 5.336 5 C 0.148 3.852 6 N -0.147 5.147 7 C -0.447 4.447 8 H 0.121 0.879 9 C -0.212 4.212 10 N -0.542 5.542 11 Si 0.819 3.181 12 H -0.187 1.187 13 H -0.215 1.215 14 H -0.198 1.198 15 C 0.121 3.879 16 C -0.047 4.047 17 N -0.207 5.207 18 C -0.372 4.372 19 C 0.168 3.832 20 N -0.396 5.396 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.183 0.817 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.133 0.867 29 H 0.232 0.768 30 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -9.569 -2.017 -4.822 10.904 hybrid contribution 0.478 -1.835 -0.216 1.908 sum -9.091 -3.852 -5.038 11.084 Atomic orbital electron populations 1.20263 0.88819 1.02383 1.01678 1.20158 0.98026 0.91890 1.22237 1.22345 0.88173 0.97788 0.90703 1.67140 1.09296 1.29451 1.27691 1.18460 0.85173 0.89511 0.92041 1.42346 1.00097 1.05147 1.67151 1.19768 0.93689 0.91623 1.39669 0.87912 1.26052 0.99571 1.00675 0.94928 1.70029 1.17506 1.37018 1.29642 0.84947 0.76549 0.77757 0.78854 1.18660 1.21538 1.19784 1.18566 1.00039 0.86243 0.83087 1.29900 0.89110 0.89641 0.96027 1.80748 1.13044 1.13141 1.13812 1.20577 0.93285 0.97456 1.25881 1.17560 0.90099 0.87344 0.88157 1.42260 1.09484 1.04218 1.83657 0.91762 0.92135 0.91256 0.81657 0.92081 0.86868 0.87136 0.86743 0.76826 0.76064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 9.62 71.24 0.69 -0.89 16 2 C -0.31 -9.79 5.92 -19.61 -0.12 -9.91 16 3 C 0.17 5.95 10.84 84.59 0.92 6.87 16 4 N -0.61 -26.19 9.17 -193.52 -1.78 -27.96 16 5 C 0.38 17.68 7.29 132.97 0.97 18.65 16 6 N -0.45 -21.91 2.69 -527.95 -1.42 -23.33 16 7 C -0.32 -15.77 8.97 84.04 0.75 -15.02 16 8 H 0.10 4.89 6.25 -2.91 -0.02 4.87 16 9 C -0.01 -0.55 4.90 84.87 0.42 -0.13 16 10 N -0.90 -47.33 9.44 21.65 0.20 -47.12 16 11 Si 0.99 39.23 29.59 68.60 2.03 41.26 16 12 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 13 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 15 C 0.25 11.31 5.12 84.58 0.43 11.74 16 16 C 0.27 13.71 13.49 89.45 1.21 14.92 16 17 N -0.53 -28.39 18.53 19.99 0.37 -28.02 16 18 C -0.34 -14.25 9.15 22.65 0.21 -14.04 16 19 C 0.28 9.58 6.79 38.53 0.26 9.84 16 20 N -0.86 -20.66 8.99 -51.04 -0.46 -21.12 16 21 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.06 1.11 6.67 -2.39 -0.02 1.09 16 23 H 0.07 1.32 8.09 -2.38 -0.02 1.30 16 24 H 0.17 4.60 8.06 -2.91 -0.02 4.57 16 25 H 0.27 13.78 8.31 -92.70 -0.77 13.01 16 26 H 0.11 5.15 6.59 -2.38 -0.02 5.13 16 27 H 0.11 4.48 7.49 -2.39 -0.02 4.47 16 28 H 0.11 4.88 6.22 -2.91 -0.02 4.86 16 29 H 0.40 8.74 8.86 -92.71 -0.82 7.92 16 30 H 0.41 7.44 6.97 -92.71 -0.65 6.79 16 Total: -1.00 -63.34 263.48 4.42 -58.92 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -0.27 Total: 25.34 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 5.73 Total: 22.02 kcal Atomic # 7 Polarization: -144.46 SS G_CDS: -3.08 Total: -147.55 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -63.34 4.42 -58.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132982156.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.506 kcal (2) G-P(sol) polarization free energy of solvation -63.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds