Wall clock time and date at job start Mon Mar 30 2020 03:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99695 * 2 1 4 4 H 1.48495 * 109.47113 * 239.99762 * 3 2 1 5 5 H 1.48495 * 109.47356 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46732 * 120.00090 * 3 2 1 7 7 C 1.37869 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00396 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47295 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47290 * 180.02562 * 10 9 7 12 12 C 1.47924 * 111.00269 * 71.09382 * 11 10 9 13 13 C 1.54592 * 102.60379 * 210.99174 * 12 11 10 14 14 C 1.51590 * 102.88787 * 25.53992 * 13 12 11 15 15 C 1.38130 * 131.49474 * 164.01133 * 14 13 12 16 16 C 1.38237 * 120.21788 * 180.27985 * 15 14 13 17 17 C 1.38310 * 119.93713 * 359.97438 * 16 15 14 18 18 C 1.38456 * 120.17090 * 359.88218 * 17 16 15 19 19 N 1.40016 * 119.95600 * 179.97438 * 18 17 16 20 20 C 1.38696 * 107.99237 * 344.04316 * 14 13 12 21 21 H 0.97003 * 120.00484 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46948 * 60.00434 * 9 7 2 23 23 H 1.09000 * 109.47095 * 300.00434 * 9 7 2 24 24 H 1.08998 * 109.46962 * 60.00056 * 10 9 7 25 25 H 1.09006 * 109.47019 * 299.99803 * 10 9 7 26 26 H 1.08992 * 110.77930 * 92.70882 * 12 11 10 27 27 H 1.09005 * 110.77574 * 329.27066 * 12 11 10 28 28 H 1.09002 * 110.72750 * 143.88892 * 13 12 11 29 29 H 1.08990 * 110.72834 * 267.01513 * 13 12 11 30 30 H 1.08006 * 119.89118 * 0.26124 * 15 14 13 31 31 H 1.07997 * 120.03392 * 179.97438 * 16 15 14 32 32 H 1.07998 * 119.91393 * 179.85425 * 17 16 15 33 33 H 0.96997 * 120.00288 * 335.40010 * 19 18 17 34 34 H 0.97001 * 119.99299 * 155.40214 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 0.8587 -5.1693 -1.3079 13 6 -0.4003 -5.9764 -0.9163 14 6 -0.6435 -5.5489 0.5176 15 6 -1.7500 -5.6743 1.3349 16 6 -1.7187 -5.1866 2.6280 17 6 -0.5760 -4.5713 3.1062 18 6 0.5379 -4.4446 2.2938 19 7 1.6922 -3.8205 2.7823 20 6 0.5111 -4.9384 0.9844 21 1 -0.4851 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6247 -2.5570 0.8896 24 1 2.8719 -3.6043 0.8894 25 1 2.8719 -3.6043 -0.8906 26 1 1.5047 -5.7538 -1.9628 27 1 0.5824 -4.2252 -1.7775 28 1 -1.2453 -5.7041 -1.5487 29 1 -0.2057 -7.0472 -0.9747 30 1 -2.6427 -6.1547 0.9623 31 1 -2.5857 -5.2859 3.2643 32 1 -0.5528 -4.1883 4.1157 33 1 1.6272 -3.1802 3.5080 34 1 2.5568 -4.0284 2.3949 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168392193.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:39 Heat of formation + Delta-G solvation = 39.554562 kcal Electronic energy + Delta-G solvation = -16511.478877 eV Core-core repulsion = 14023.051842 eV Total energy + Delta-G solvation = -2488.427035 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.31910 -36.39678 -34.67930 -32.96727 -31.14990 -28.83241 -28.50665 -27.23359 -24.18777 -22.35518 -21.58679 -20.77981 -19.71701 -16.55959 -16.22979 -15.86121 -15.55867 -15.03041 -14.50950 -14.28972 -13.84022 -13.19857 -12.72770 -12.64267 -12.41558 -11.79533 -11.57521 -11.40257 -11.11285 -10.90033 -10.86483 -10.77866 -10.61504 -10.08872 -9.72836 -9.63098 -9.16257 -8.89634 -8.34039 -7.48541 -6.54070 -6.00389 -4.03917 1.96606 2.16155 3.29744 3.35025 3.36654 4.21467 4.43287 4.53483 4.63917 5.09151 5.20189 5.34189 5.51709 5.66767 5.71288 5.79427 5.96972 6.08573 6.16519 6.27401 6.33717 6.47903 6.54169 6.70024 6.85718 6.90746 7.12523 7.28428 7.48608 7.63455 7.73959 7.83564 8.02269 8.21923 8.39219 8.43083 9.02677 9.59280 11.09971 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027873 B = 0.008435 C = 0.007762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.309981 B = 3318.621953 C = 3606.503728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.518 4.518 8 H 0.052 0.948 9 C -0.001 4.001 10 C 0.044 3.956 11 N -0.480 5.480 12 C 0.043 3.957 13 C -0.080 4.080 14 C -0.111 4.111 15 C -0.139 4.139 16 C -0.109 4.109 17 C -0.176 4.176 18 C 0.214 3.786 19 N -0.878 5.878 20 C 0.054 3.946 21 H 0.260 0.740 22 H 0.011 0.989 23 H 0.035 0.965 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.392 0.608 34 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 -10.404 2.558 10.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.071 0.929 9 C -0.039 4.039 10 C -0.081 4.081 11 N -0.195 5.195 12 C -0.084 4.084 13 C -0.118 4.118 14 C -0.115 4.115 15 C -0.159 4.159 16 C -0.128 4.128 17 C -0.199 4.199 18 C 0.109 3.891 19 N -0.422 5.422 20 C -0.048 4.048 21 H 0.070 0.930 22 H 0.029 0.971 23 H 0.053 0.947 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.221 0.779 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.409 -10.698 2.570 11.010 hybrid contribution 0.262 1.903 -0.052 1.922 sum -0.147 -8.794 2.518 9.149 Atomic orbital electron populations 1.69971 1.05992 1.26590 1.50405 1.24992 0.94782 0.99079 0.95364 0.86700 0.79588 0.83383 0.78542 1.20314 1.21329 1.20330 1.21053 0.92715 0.90935 1.51035 0.92936 1.19661 0.94474 0.91790 0.98001 1.22614 0.97551 0.86937 1.01046 1.61167 1.22306 1.33361 1.02684 1.23198 0.93987 1.00012 0.91188 1.21232 0.97829 0.99840 0.92872 1.20248 0.93452 1.01715 0.96043 1.20032 0.97228 1.04545 0.94085 1.20580 0.97195 0.99642 0.95399 1.20379 0.93996 1.06457 0.99066 1.17126 0.88599 0.93706 0.89684 1.42574 1.06376 1.49994 1.43258 1.19166 0.91649 1.02168 0.91770 0.93002 0.97077 0.94684 0.91453 0.91921 0.89883 0.91356 0.90744 0.90353 0.87178 0.86664 0.86554 0.77943 0.77271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 9 C 0.00 -0.04 4.18 -27.88 -0.12 -0.15 16 10 C 0.04 0.93 4.73 -3.82 -0.02 0.91 16 11 N -0.48 -9.22 5.31 -168.80 -0.90 -10.11 16 12 C 0.04 0.73 6.69 -2.42 -0.02 0.72 16 13 C -0.08 -1.25 7.03 -26.61 -0.19 -1.44 16 14 C -0.11 -2.02 6.23 -104.05 -0.65 -2.67 16 15 C -0.14 -2.31 10.03 -39.62 -0.40 -2.71 16 16 C -0.11 -1.76 10.05 -39.56 -0.40 -2.16 16 17 C -0.18 -3.04 9.91 -39.47 -0.39 -3.43 16 18 C 0.21 4.06 5.33 -83.39 -0.44 3.62 16 19 N -0.88 -15.11 7.73 32.60 0.25 -14.86 16 20 C 0.05 1.06 4.74 -83.12 -0.39 0.66 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.01 0.31 6.58 -51.92 -0.34 -0.03 16 23 H 0.03 0.97 5.55 -51.93 -0.29 0.68 16 24 H 0.07 1.35 5.33 -51.93 -0.28 1.08 16 25 H 0.06 1.29 8.07 -51.93 -0.42 0.87 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 1.31 6.29 -51.93 -0.33 0.99 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 31 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.39 6.16 8.91 -40.82 -0.36 5.80 16 34 H 0.40 6.63 6.31 -40.82 -0.26 6.37 16 LS Contribution 272.35 15.07 4.10 4.10 Total: -1.00 -31.14 272.35 -8.60 -39.74 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -4.35 Total: 10.52 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -3.42 Total: -19.82 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.09 Total: -51.15 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.14 -8.60 -39.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168392193.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.290 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds