Wall clock time and date at job start Mon Mar 30 2020 03:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99695 * 2 1 4 4 H 1.48495 * 109.47113 * 239.99762 * 3 2 1 5 5 H 1.48495 * 109.47356 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46732 * 120.00090 * 3 2 1 7 7 C 1.37869 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00396 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47295 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47290 * 180.02562 * 10 9 7 12 12 C 1.47924 * 111.00269 * 71.09382 * 11 10 9 13 13 C 1.54592 * 102.60379 * 210.99174 * 12 11 10 14 14 C 1.51590 * 102.88787 * 25.53992 * 13 12 11 15 15 C 1.38130 * 131.49474 * 164.01133 * 14 13 12 16 16 C 1.38237 * 120.21788 * 180.27985 * 15 14 13 17 17 C 1.38310 * 119.93713 * 359.97438 * 16 15 14 18 18 C 1.38456 * 120.17090 * 359.88218 * 17 16 15 19 19 N 1.40016 * 119.95600 * 179.97438 * 18 17 16 20 20 C 1.38696 * 107.99237 * 344.04316 * 14 13 12 21 21 H 0.97003 * 120.00484 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46948 * 60.00434 * 9 7 2 23 23 H 1.09000 * 109.47095 * 300.00434 * 9 7 2 24 24 H 1.08998 * 109.46962 * 60.00056 * 10 9 7 25 25 H 1.09006 * 109.47019 * 299.99803 * 10 9 7 26 26 H 1.08992 * 110.77930 * 92.70882 * 12 11 10 27 27 H 1.09005 * 110.77574 * 329.27066 * 12 11 10 28 28 H 1.09002 * 110.72750 * 143.88892 * 13 12 11 29 29 H 1.08990 * 110.72834 * 267.01513 * 13 12 11 30 30 H 1.08006 * 119.89118 * 0.26124 * 15 14 13 31 31 H 1.07997 * 120.03392 * 179.97438 * 16 15 14 32 32 H 1.07998 * 119.91393 * 179.85425 * 17 16 15 33 33 H 0.96997 * 120.00288 * 335.40010 * 19 18 17 34 34 H 0.97001 * 119.99299 * 155.40214 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 0.8587 -5.1693 -1.3079 13 6 -0.4003 -5.9764 -0.9163 14 6 -0.6435 -5.5489 0.5176 15 6 -1.7500 -5.6743 1.3349 16 6 -1.7187 -5.1866 2.6280 17 6 -0.5760 -4.5713 3.1062 18 6 0.5379 -4.4446 2.2938 19 7 1.6922 -3.8205 2.7823 20 6 0.5111 -4.9384 0.9844 21 1 -0.4851 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6247 -2.5570 0.8896 24 1 2.8719 -3.6043 0.8894 25 1 2.8719 -3.6043 -0.8906 26 1 1.5047 -5.7538 -1.9628 27 1 0.5824 -4.2252 -1.7775 28 1 -1.2453 -5.7041 -1.5487 29 1 -0.2057 -7.0472 -0.9747 30 1 -2.6427 -6.1547 0.9623 31 1 -2.5857 -5.2859 3.2643 32 1 -0.5528 -4.1883 4.1157 33 1 1.6272 -3.1802 3.5080 34 1 2.5568 -4.0284 2.3949 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168392193.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:39 Heat of formation + Delta-G solvation = 18.928657 kcal Electronic energy + Delta-G solvation = -16512.373283 eV Core-core repulsion = 14023.051842 eV Total energy + Delta-G solvation = -2489.321441 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.71373 -37.79722 -36.17817 -34.92697 -32.76943 -30.49532 -29.85414 -28.76095 -26.08372 -23.75327 -23.26810 -22.16091 -21.21536 -18.64237 -17.63718 -17.19868 -16.99511 -16.63665 -16.40891 -15.64470 -15.25984 -14.80948 -14.45104 -14.24259 -13.80093 -13.38918 -13.30861 -12.99089 -12.72760 -12.56506 -12.45080 -12.26904 -12.08211 -11.83475 -11.57235 -11.31292 -10.92554 -10.57498 -10.42027 -8.86369 -8.20384 -7.94809 -6.30354 0.60530 0.81165 1.37167 1.39358 1.47249 2.38474 2.84342 3.13404 3.18566 3.28088 3.78465 3.86661 4.20963 4.31032 4.37278 4.49714 4.65156 4.70819 4.72637 4.82187 4.93631 5.04430 5.10180 5.18416 5.37308 5.49093 5.57839 5.63251 5.78427 5.81783 6.01073 6.08276 6.27454 6.37396 6.83692 6.86964 7.11345 7.37836 8.91578 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027873 B = 0.008435 C = 0.007762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.309981 B = 3318.621953 C = 3606.503728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.015 3.985 10 C 0.057 3.943 11 N -0.476 5.476 12 C 0.037 3.963 13 C -0.074 4.074 14 C -0.126 4.126 15 C -0.148 4.148 16 C -0.106 4.106 17 C -0.190 4.190 18 C 0.192 3.808 19 N -0.877 5.877 20 C 0.014 3.986 21 H 0.261 0.739 22 H -0.025 1.025 23 H 0.013 0.987 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.111 0.889 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.134 0.866 33 H 0.397 0.603 34 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.525 -10.879 2.820 11.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.573 4.573 8 H 0.077 0.923 9 C -0.023 4.023 10 C -0.069 4.069 11 N -0.191 5.191 12 C -0.089 4.089 13 C -0.111 4.111 14 C -0.129 4.129 15 C -0.168 4.168 16 C -0.126 4.126 17 C -0.213 4.213 18 C 0.087 3.913 19 N -0.421 5.421 20 C -0.087 4.087 21 H 0.069 0.931 22 H -0.007 1.007 23 H 0.031 0.969 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.129 0.871 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.156 0.844 31 H 0.166 0.834 32 H 0.152 0.848 33 H 0.226 0.774 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.251 -11.190 2.842 11.548 hybrid contribution 0.136 2.008 -0.108 2.015 sum -0.115 -9.182 2.733 9.581 Atomic orbital electron populations 1.70122 1.07793 1.27501 1.51644 1.25898 0.95597 1.03054 0.94887 0.85573 0.78265 0.78483 0.79133 1.19360 1.21209 1.19105 1.21498 0.93270 0.92095 1.50431 0.92259 1.19421 0.94547 0.93201 0.95103 1.22354 0.96609 0.86456 1.01499 1.61265 1.22771 1.31524 1.03492 1.23327 0.95503 0.99357 0.90706 1.21289 0.97295 1.00983 0.91524 1.20742 0.93449 1.01336 0.97401 1.20444 0.97751 1.04418 0.94223 1.21048 0.97750 0.98043 0.95721 1.20750 0.94011 1.06666 0.99902 1.17490 0.89525 0.94201 0.90061 1.42531 1.06131 1.50089 1.43350 1.19485 0.92666 1.04199 0.92316 0.93055 1.00670 0.96882 0.90604 0.91698 0.87120 0.94300 0.89572 0.87702 0.84415 0.83427 0.84808 0.77381 0.77262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.44 0.28 -56.94 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.53 -30.10 9.11 25.60 0.23 -29.87 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 0.81 4.18 29.85 0.12 0.94 16 10 C 0.06 2.44 4.73 86.30 0.41 2.85 16 11 N -0.48 -18.20 5.31 -687.96 -3.65 -21.85 16 12 C 0.04 1.27 6.69 86.65 0.58 1.85 16 13 C -0.07 -2.19 7.03 30.67 0.22 -1.97 16 14 C -0.13 -4.47 6.23 -19.50 -0.12 -4.59 16 15 C -0.15 -4.67 10.03 22.24 0.22 -4.45 16 16 C -0.11 -3.25 10.05 22.29 0.22 -3.02 16 17 C -0.19 -6.42 9.91 22.34 0.22 -6.20 16 18 C 0.19 7.31 5.33 38.31 0.20 7.51 16 19 N -0.88 -30.37 7.73 -50.78 -0.39 -30.76 16 20 C 0.01 0.56 4.74 38.30 0.18 0.74 16 21 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 22 H -0.02 -1.48 6.58 -2.38 -0.02 -1.50 16 23 H 0.01 0.74 5.55 -2.39 -0.01 0.73 16 24 H 0.08 3.05 5.33 -2.39 -0.01 3.04 16 25 H 0.06 2.68 8.07 -2.38 -0.02 2.66 16 26 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 27 H 0.04 1.54 6.29 -2.38 -0.01 1.52 16 28 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.10 2.55 8.14 -2.39 -0.02 2.54 16 30 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 31 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.40 12.56 8.91 -92.71 -0.83 11.73 16 34 H 0.40 13.34 6.31 -92.71 -0.58 12.75 16 Total: -1.00 -67.14 272.35 0.94 -66.20 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: -0.29 Total: 32.53 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 2.96 Total: -35.55 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -3.76 Total: -109.55 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -67.14 0.94 -66.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168392193.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.133 kcal (2) G-P(sol) polarization free energy of solvation -67.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds