Wall clock time and date at job start Mon Mar 30 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31313 * 119.81028 * 2 1 4 4 C 1.34030 * 120.88705 * 180.02562 * 3 2 1 5 5 N 1.32425 * 132.16056 * 180.02562 * 4 3 2 6 6 C 1.34141 * 109.75605 * 179.97438 * 5 4 3 7 7 C 1.41485 * 125.45726 * 180.25829 * 6 5 4 8 8 H 1.08005 * 119.99651 * 179.69319 * 7 6 5 9 9 C 1.39939 * 120.00424 * 359.69832 * 7 6 5 10 10 N 1.30792 * 119.99682 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00302 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46794 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47279 * 119.99952 * 11 9 7 14 14 H 1.48503 * 109.47077 * 240.00006 * 11 9 7 15 15 N 1.33074 * 109.07760 * 359.97438 * 6 5 4 16 16 N 1.37094 * 120.18205 * 359.97438 * 4 3 2 17 17 C 1.36134 * 120.22324 * 0.02562 * 16 4 3 18 18 C 1.50702 * 120.47887 * 179.97438 * 17 16 4 19 19 C 1.35751 * 119.04729 * 359.93238 * 17 16 4 20 20 C 1.50699 * 120.35656 * 180.02562 * 19 17 16 21 21 H 1.08994 * 109.47152 * 90.00311 * 1 2 3 22 22 H 1.09006 * 109.46258 * 210.00021 * 1 2 3 23 23 H 1.09000 * 109.46970 * 329.99516 * 1 2 3 24 24 H 0.97005 * 119.99902 * 179.97438 * 10 9 7 25 25 H 1.09005 * 109.46843 * 89.99794 * 18 17 16 26 26 H 1.08996 * 109.46806 * 209.99892 * 18 17 16 27 27 H 1.09002 * 109.46777 * 330.00075 * 18 17 16 28 28 H 1.08999 * 109.46563 * 270.02849 * 20 19 17 29 29 H 1.09001 * 109.46860 * 30.02688 * 20 19 17 30 30 H 1.08991 * 109.46883 * 150.03199 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1394 0.0000 4 6 3.4999 1.1646 -0.0005 5 7 4.3702 2.1627 -0.0002 6 6 5.6197 1.6748 -0.0004 7 6 6.8034 2.4498 0.0050 8 1 7.7675 1.9631 0.0093 9 6 6.7250 3.8470 0.0049 10 7 5.5575 4.4365 -0.0008 11 14 8.2878 4.8702 0.0127 12 1 9.4688 3.9699 0.0190 13 1 8.3245 5.7272 -1.1994 14 1 8.3125 5.7268 1.2256 15 7 5.5675 0.3451 -0.0004 16 7 4.2113 -0.0074 -0.0005 17 6 3.5614 -1.2035 -0.0005 18 6 4.3376 -2.4952 -0.0011 19 6 2.2039 -1.2161 0.0009 20 6 1.4544 -2.5234 0.0015 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3632 -0.8901 0.5139 23 1 -0.3633 0.8899 0.5139 24 1 5.5031 5.4050 -0.0005 25 1 4.5252 -2.8069 1.0265 26 1 3.7617 -3.2649 -0.5149 27 1 5.2874 -2.3481 -0.5153 28 1 1.2731 -2.8387 -1.0261 29 1 2.0461 -3.2812 0.5150 30 1 0.5019 -2.3959 0.5158 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215061561.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:36 Heat of formation + Delta-G solvation = 114.485213 kcal Electronic energy + Delta-G solvation = -15795.997054 eV Core-core repulsion = 13207.278912 eV Total energy + Delta-G solvation = -2588.718142 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.24062 -38.00163 -34.55400 -33.78093 -32.15143 -30.14566 -28.62348 -27.90726 -26.69042 -25.07453 -21.41458 -21.27613 -19.94389 -17.83542 -16.70373 -16.15588 -15.44894 -14.81594 -14.10478 -13.65725 -13.41261 -13.20187 -13.02924 -12.93044 -12.49652 -12.24981 -11.78485 -11.45040 -11.40616 -11.37229 -10.96796 -10.87538 -10.66570 -10.32525 -10.27999 -9.26719 -8.84561 -8.26056 -8.11997 -7.29670 -6.63360 -4.72319 1.45684 1.89218 3.00671 3.08697 3.15033 3.37215 3.90722 3.93784 4.42204 4.55053 4.74791 5.09674 5.25738 5.46026 5.50467 5.60927 5.64774 5.69545 5.76559 5.82868 5.90819 6.00636 6.14363 6.23665 6.46313 6.87328 6.98211 7.17111 7.52254 7.88253 8.17574 8.58774 8.69034 8.78308 9.83035 10.27930 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.045878 B = 0.007132 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.162725 B = 3924.782481 C = 4509.189500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.209 3.791 3 N -0.480 5.480 4 C 0.414 3.586 5 N -0.485 5.485 6 C 0.371 3.629 7 C -0.417 4.417 8 H 0.096 0.904 9 C 0.073 3.927 10 N -0.732 5.732 11 Si 0.924 3.076 12 H -0.259 1.259 13 H -0.272 1.272 14 H -0.272 1.272 15 N -0.450 5.450 16 N -0.329 5.329 17 C 0.203 3.797 18 C -0.111 4.111 19 C -0.256 4.256 20 C -0.083 4.083 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.279 0.721 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 -9.962 0.011 12.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.042 3.958 3 N -0.198 5.198 4 C 0.053 3.947 5 N -0.217 5.217 6 C 0.121 3.879 7 C -0.457 4.457 8 H 0.114 0.886 9 C -0.153 4.153 10 N -0.356 5.356 11 Si 0.747 3.253 12 H -0.182 1.182 13 H -0.197 1.197 14 H -0.197 1.197 15 N -0.293 5.293 16 N -0.108 5.108 17 C 0.077 3.923 18 C -0.169 4.169 19 C -0.266 4.266 20 C -0.141 4.141 21 H 0.099 0.901 22 H 0.098 0.902 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.433 -8.672 0.011 10.798 hybrid contribution 0.829 -0.211 -0.007 0.855 sum -5.604 -8.884 0.003 10.504 Atomic orbital electron populations 1.20732 0.88330 1.03481 1.03180 1.21424 0.96738 0.87080 0.90538 1.67688 1.03609 1.28136 1.20336 1.23519 0.89914 0.83014 0.98218 1.71715 0.98671 1.23041 1.28267 1.21089 0.91318 0.86686 0.88849 1.18614 0.90629 0.89823 1.46603 0.88600 1.26030 0.97973 0.98390 0.92925 1.70048 1.24793 1.11074 1.29642 0.86014 0.81177 0.79498 0.78602 1.18210 1.19673 1.19676 1.79182 0.85665 1.14684 1.49756 1.49177 1.09311 1.06095 1.46231 1.20269 0.91282 0.87076 0.93707 1.20862 1.00610 0.91895 1.03498 1.19589 0.91435 0.97383 1.18231 1.20465 0.99302 0.92549 1.01736 0.90128 0.90196 0.90331 0.91005 0.89983 0.89881 0.89874 0.91910 0.91882 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 9.80 36.01 0.35 -0.90 16 2 C 0.21 3.84 6.83 -82.09 -0.56 3.28 16 3 N -0.48 -11.58 10.40 -9.96 -0.10 -11.68 16 4 C 0.41 11.51 8.98 -322.77 -2.90 8.61 16 5 N -0.48 -15.02 9.39 -13.68 -0.13 -15.15 16 6 C 0.37 11.26 7.59 -158.07 -1.20 10.06 16 7 C -0.42 -11.93 9.50 -37.71 -0.36 -12.29 16 8 H 0.10 2.58 7.85 -52.48 -0.41 2.17 16 9 C 0.07 1.94 5.49 -17.36 -0.10 1.85 16 10 N -0.73 -20.67 11.88 55.55 0.66 -20.01 16 11 Si 0.92 19.22 29.56 -169.99 -5.02 14.19 16 12 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 13 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 14 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 15 N -0.45 -12.76 12.76 30.81 0.39 -12.37 16 16 N -0.33 -8.44 3.91 -10.01 -0.04 -8.48 16 17 C 0.20 3.99 6.86 -81.57 -0.56 3.43 16 18 C -0.11 -1.66 9.30 36.01 0.33 -1.32 16 19 C -0.26 -4.27 5.87 -104.79 -0.61 -4.89 16 20 C -0.08 -0.89 8.82 36.01 0.32 -0.57 16 21 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.08 0.75 6.01 -51.93 -0.31 0.43 16 23 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.08 0.92 6.72 -51.93 -0.35 0.57 16 27 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.59 6.72 -51.93 -0.35 0.24 16 30 H 0.07 0.61 6.02 -51.93 -0.31 0.30 16 LS Contribution 260.58 15.07 3.93 3.93 Total: -1.00 -35.51 260.58 -8.58 -44.09 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -2.98 Total: -1.79 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -5.28 Total: 7.26 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: 0.78 Total: -67.68 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -35.51 -8.58 -44.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215061561.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.574 kcal (2) G-P(sol) polarization free energy of solvation -35.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds