Wall clock time and date at job start Mon Mar 30 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31313 * 119.81028 * 2 1 4 4 C 1.34030 * 120.88705 * 180.02562 * 3 2 1 5 5 N 1.32425 * 132.16056 * 180.02562 * 4 3 2 6 6 C 1.34141 * 109.75605 * 179.97438 * 5 4 3 7 7 C 1.41485 * 125.45726 * 180.25829 * 6 5 4 8 8 H 1.08005 * 119.99651 * 179.69319 * 7 6 5 9 9 C 1.39939 * 120.00424 * 359.69832 * 7 6 5 10 10 N 1.30792 * 119.99682 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00302 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46794 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47279 * 119.99952 * 11 9 7 14 14 H 1.48503 * 109.47077 * 240.00006 * 11 9 7 15 15 N 1.33074 * 109.07760 * 359.97438 * 6 5 4 16 16 N 1.37094 * 120.18205 * 359.97438 * 4 3 2 17 17 C 1.36134 * 120.22324 * 0.02562 * 16 4 3 18 18 C 1.50702 * 120.47887 * 179.97438 * 17 16 4 19 19 C 1.35751 * 119.04729 * 359.93238 * 17 16 4 20 20 C 1.50699 * 120.35656 * 180.02562 * 19 17 16 21 21 H 1.08994 * 109.47152 * 90.00311 * 1 2 3 22 22 H 1.09006 * 109.46258 * 210.00021 * 1 2 3 23 23 H 1.09000 * 109.46970 * 329.99516 * 1 2 3 24 24 H 0.97005 * 119.99902 * 179.97438 * 10 9 7 25 25 H 1.09005 * 109.46843 * 89.99794 * 18 17 16 26 26 H 1.08996 * 109.46806 * 209.99892 * 18 17 16 27 27 H 1.09002 * 109.46777 * 330.00075 * 18 17 16 28 28 H 1.08999 * 109.46563 * 270.02849 * 20 19 17 29 29 H 1.09001 * 109.46860 * 30.02688 * 20 19 17 30 30 H 1.08991 * 109.46883 * 150.03199 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1394 0.0000 4 6 3.4999 1.1646 -0.0005 5 7 4.3702 2.1627 -0.0002 6 6 5.6197 1.6748 -0.0004 7 6 6.8034 2.4498 0.0050 8 1 7.7675 1.9631 0.0093 9 6 6.7250 3.8470 0.0049 10 7 5.5575 4.4365 -0.0008 11 14 8.2878 4.8702 0.0127 12 1 9.4688 3.9699 0.0190 13 1 8.3245 5.7272 -1.1994 14 1 8.3125 5.7268 1.2256 15 7 5.5675 0.3451 -0.0004 16 7 4.2113 -0.0074 -0.0005 17 6 3.5614 -1.2035 -0.0005 18 6 4.3376 -2.4952 -0.0011 19 6 2.2039 -1.2161 0.0009 20 6 1.4544 -2.5234 0.0015 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3632 -0.8901 0.5139 23 1 -0.3633 0.8899 0.5139 24 1 5.5031 5.4050 -0.0005 25 1 4.5252 -2.8069 1.0265 26 1 3.7617 -3.2649 -0.5149 27 1 5.2874 -2.3481 -0.5153 28 1 1.2731 -2.8387 -1.0261 29 1 2.0461 -3.2812 0.5150 30 1 0.5019 -2.3959 0.5158 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215061561.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:36 Heat of formation + Delta-G solvation = 90.879614 kcal Electronic energy + Delta-G solvation = -15797.020669 eV Core-core repulsion = 13207.278912 eV Total energy + Delta-G solvation = -2589.741757 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.06538 -39.71323 -36.17243 -35.64326 -33.80153 -31.86402 -30.28611 -29.23803 -28.45360 -26.55159 -23.09576 -22.95023 -21.80650 -19.60042 -18.60286 -17.92958 -17.19265 -16.63771 -15.53412 -15.01138 -14.87628 -14.56492 -14.45714 -14.23941 -13.53097 -13.39738 -13.30426 -13.08053 -12.98945 -12.84569 -12.66910 -12.48444 -12.24429 -12.05345 -11.94081 -11.07421 -10.56558 -10.31375 -9.97340 -9.14226 -8.58268 -6.83140 -0.12940 0.18885 1.36961 1.37262 1.56626 1.66695 2.06343 2.20521 2.69767 2.80860 3.36997 3.37903 3.61435 4.01174 4.24229 4.43179 4.48994 4.56372 4.62436 4.76508 4.83716 4.97714 5.04420 5.15784 5.20260 5.22574 5.26332 5.60348 5.80604 5.89789 6.14795 6.58282 6.68972 6.96911 7.81469 8.36978 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.045878 B = 0.007132 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.162725 B = 3924.782481 C = 4509.189500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.209 3.791 3 N -0.521 5.521 4 C 0.395 3.605 5 N -0.547 5.547 6 C 0.343 3.657 7 C -0.457 4.457 8 H 0.098 0.902 9 C 0.026 3.974 10 N -0.781 5.781 11 Si 1.013 2.987 12 H -0.250 1.250 13 H -0.260 1.260 14 H -0.260 1.260 15 N -0.475 5.475 16 N -0.345 5.345 17 C 0.166 3.834 18 C -0.104 4.104 19 C -0.226 4.226 20 C -0.084 4.084 21 H 0.106 0.894 22 H 0.126 0.874 23 H 0.074 0.926 24 H 0.286 0.714 25 H 0.098 0.902 26 H 0.132 0.868 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.702 -12.544 0.009 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.045 3.955 3 N -0.241 5.241 4 C 0.034 3.966 5 N -0.281 5.281 6 C 0.091 3.909 7 C -0.497 4.497 8 H 0.116 0.884 9 C -0.195 4.195 10 N -0.405 5.405 11 Si 0.831 3.169 12 H -0.173 1.173 13 H -0.185 1.185 14 H -0.185 1.185 15 N -0.318 5.318 16 N -0.124 5.124 17 C 0.044 3.956 18 C -0.161 4.161 19 C -0.235 4.235 20 C -0.141 4.141 21 H 0.124 0.876 22 H 0.144 0.856 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.150 0.850 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.416 -11.376 0.010 14.150 hybrid contribution 1.032 0.259 -0.011 1.064 sum -7.384 -11.116 -0.001 13.345 Atomic orbital electron populations 1.21022 0.83476 1.05590 1.05328 1.22731 0.99646 0.86403 0.86698 1.67840 1.01910 1.31221 1.23123 1.23712 0.91167 0.83489 0.98245 1.71522 0.99426 1.25576 1.31620 1.21542 0.92056 0.87571 0.89690 1.19013 0.90432 0.91348 1.48918 0.88415 1.27189 1.02127 0.98846 0.91314 1.70177 1.27746 1.11765 1.30784 0.84733 0.75747 0.77255 0.79200 1.17317 1.18459 1.18474 1.78904 0.88039 1.14118 1.50710 1.49117 1.08152 1.07595 1.47526 1.21502 0.93071 0.87022 0.93963 1.21011 0.99688 0.90543 1.04873 1.20506 0.90440 0.99782 1.12761 1.20754 1.00054 0.89016 1.04280 0.87593 0.85622 0.90709 0.90314 0.88336 0.84982 0.92251 0.89137 0.89625 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 9.80 71.24 0.70 -1.29 16 2 C 0.21 7.21 6.83 43.10 0.29 7.50 16 3 N -0.52 -25.62 10.40 -185.42 -1.93 -27.55 16 4 C 0.39 23.07 8.98 261.47 2.35 25.42 16 5 N -0.55 -36.32 9.39 -197.21 -1.85 -38.17 16 6 C 0.34 22.40 7.59 135.03 1.02 23.43 16 7 C -0.46 -27.94 9.50 23.48 0.22 -27.72 16 8 H 0.10 5.62 7.85 -2.91 -0.02 5.60 16 9 C 0.03 1.48 5.49 85.26 0.47 1.95 16 10 N -0.78 -46.69 11.88 21.82 0.26 -46.43 16 11 Si 1.01 40.83 29.56 68.60 2.03 42.86 16 12 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 13 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 14 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 15 N -0.47 -28.62 12.76 -56.45 -0.72 -29.34 16 16 N -0.34 -18.31 3.91 -185.59 -0.73 -19.04 16 17 C 0.17 6.34 6.86 41.32 0.28 6.62 16 18 C -0.10 -2.85 9.30 71.24 0.66 -2.19 16 19 C -0.23 -6.74 5.87 -19.98 -0.12 -6.85 16 20 C -0.08 -1.22 8.82 71.24 0.63 -0.59 16 21 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.13 1.45 6.01 -2.38 -0.01 1.44 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.29 15.23 8.30 -92.70 -0.77 14.46 16 25 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 26 H 0.13 2.25 6.72 -2.39 -0.02 2.23 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 0.98 6.72 -2.39 -0.02 0.97 16 30 H 0.10 0.95 6.02 -2.39 -0.01 0.93 16 Total: -1.00 -89.10 260.58 4.75 -84.36 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.17 Total: 7.04 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: 6.51 Total: 26.27 kcal Atomic # 7 Polarization: -155.56 SS G_CDS: -4.97 Total: -160.53 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -89.10 4.75 -84.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215061561.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.237 kcal (2) G-P(sol) polarization free energy of solvation -89.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds