Wall clock time and date at job start Mon Mar 30 2020 03:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 H 1.08997 * 109.48706 * 60.32576 * 9 7 2 11 11 C 1.53047 * 109.48954 * 180.38672 * 9 7 2 12 12 N 1.46962 * 109.36737 * 178.37381 * 11 9 7 13 13 C 1.39671 * 111.00227 * 176.81548 * 12 11 9 14 14 C 1.38919 * 120.07316 * 359.56261 * 13 12 11 15 15 C 1.38106 * 119.92029 * 179.77027 * 14 13 12 16 16 C 1.38286 * 120.07621 * 0.51316 * 15 14 13 17 17 C 1.38285 * 120.15102 * 359.74243 * 16 15 14 18 18 C 1.38106 * 120.07037 * 359.97438 * 17 16 15 19 19 C 1.46955 * 110.87593 * 300.67936 * 12 11 9 20 20 C 1.53053 * 109.36665 * 59.32197 * 19 12 11 21 21 N 1.46947 * 109.49463 * 300.27987 * 9 7 2 22 22 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.49161 * 298.34350 * 11 9 7 24 24 H 1.09004 * 109.48900 * 58.40427 * 11 9 7 25 25 H 1.07998 * 120.03593 * 0.02562 * 14 13 12 26 26 H 1.07999 * 119.95824 * 180.25847 * 15 14 13 27 27 H 1.08000 * 119.92076 * 179.77071 * 16 15 14 28 28 H 1.08000 * 119.96251 * 180.02562 * 17 16 15 29 29 H 1.08001 * 120.03137 * 180.02562 * 18 17 16 30 30 H 1.09000 * 109.49033 * 299.35403 * 19 12 11 31 31 H 1.08997 * 109.50856 * 179.29861 * 19 12 11 32 32 H 1.08995 * 109.49049 * 181.62963 * 20 19 12 33 33 H 1.08998 * 109.50712 * 61.57053 * 20 19 12 34 34 H 1.00903 * 111.00426 * 304.58536 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 1 3.8789 -0.6827 0.8840 11 6 4.0222 -2.6367 -0.0136 12 7 5.4911 -2.6336 -0.0591 13 6 5.9967 -3.9340 0.0050 14 6 5.1290 -5.0140 0.1072 15 6 5.6321 -6.2988 0.1656 16 6 6.9984 -6.5102 0.1331 17 6 7.8651 -5.4370 0.0368 18 6 7.3685 -4.1499 -0.0279 19 6 5.9763 -1.9385 -1.2595 20 6 5.4657 -0.4956 -1.2518 21 7 3.9969 -0.4989 -1.2061 22 1 -0.4850 0.8400 -0.0004 23 1 3.6875 -3.1458 0.8903 24 1 3.6323 -3.1558 -0.8892 25 1 4.0620 -4.8493 0.1368 26 1 4.9579 -7.1391 0.2408 27 1 7.3893 -7.5157 0.1826 28 1 8.9316 -5.6056 0.0113 29 1 8.0460 -3.3123 -0.1035 30 1 5.6086 -2.4496 -2.1493 31 1 7.0663 -1.9384 -1.2645 32 1 5.8004 0.0134 -2.1556 33 1 5.8556 0.0237 -0.3763 34 1 3.6100 -0.9092 -2.0429 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219936692.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:00 Heat of formation + Delta-G solvation = 41.703018 kcal Electronic energy + Delta-G solvation = -16223.893236 eV Core-core repulsion = 13735.559365 eV Total energy + Delta-G solvation = -2488.333871 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.04940 -37.70819 -34.22664 -32.49683 -31.21601 -30.16721 -29.02948 -25.71927 -24.74458 -22.70825 -21.54462 -20.84621 -19.63622 -17.56048 -16.72833 -15.56117 -15.08745 -14.73926 -14.39886 -14.18897 -14.06112 -13.44613 -13.39757 -13.14197 -12.85821 -12.38295 -12.17658 -11.44924 -11.35068 -10.98578 -10.96103 -10.67143 -10.37907 -10.12251 -9.81534 -9.45336 -9.15298 -8.81571 -8.56858 -7.61853 -7.44297 -6.05852 -4.16977 1.52708 1.54011 3.55820 3.58951 3.73499 3.82415 4.17718 4.61537 4.93669 4.99623 5.06504 5.24295 5.35284 5.40578 5.54169 5.56752 5.66092 5.70259 5.74640 5.96064 6.03751 6.05801 6.16183 6.39959 6.45087 6.46041 6.54154 6.66603 6.93048 6.96459 7.35086 7.57956 7.61106 8.06104 8.14993 8.57329 8.91541 9.57242 11.03322 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.044149 B = 0.007032 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.064334 B = 3980.623206 C = 4469.265383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.084 3.916 3 Si 0.933 3.067 4 H -0.279 1.279 5 H -0.317 1.317 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.072 0.928 9 C 0.186 3.814 10 H 0.052 0.948 11 C 0.036 3.964 12 N -0.492 5.492 13 C 0.123 3.877 14 C -0.172 4.172 15 C -0.094 4.094 16 C -0.159 4.159 17 C -0.099 4.099 18 C -0.149 4.149 19 C 0.027 3.973 20 C 0.052 3.948 21 N -0.684 5.684 22 H 0.264 0.736 23 H 0.079 0.921 24 H 0.040 0.960 25 H 0.130 0.870 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.072 -8.140 -2.103 16.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.121 4.121 3 Si 0.765 3.235 4 H -0.206 1.206 5 H -0.246 1.246 6 H -0.196 1.196 7 C -0.566 4.566 8 H 0.090 0.910 9 C 0.079 3.921 10 H 0.069 0.931 11 C -0.092 4.092 12 N -0.206 5.206 13 C 0.024 3.976 14 C -0.193 4.193 15 C -0.113 4.113 16 C -0.178 4.178 17 C -0.118 4.118 18 C -0.169 4.169 19 C -0.100 4.100 20 C -0.079 4.079 21 N -0.315 5.315 22 H 0.074 0.926 23 H 0.098 0.902 24 H 0.058 0.942 25 H 0.148 0.852 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.996 -7.040 -1.432 15.732 hybrid contribution 0.313 -0.575 -0.798 1.032 sum 14.309 -7.615 -2.230 16.362 Atomic orbital electron populations 1.69955 1.06833 1.27499 1.49154 1.25011 0.94598 1.00143 0.92361 0.85902 0.78685 0.80745 0.78176 1.20560 1.24632 1.19619 1.20808 0.87687 0.94699 1.53374 0.90999 1.19752 0.95836 0.86606 0.89917 0.93062 1.23049 0.82657 1.02334 1.01155 1.59231 1.11761 1.12446 1.37143 1.19203 0.93385 0.88818 0.96209 1.21473 1.00302 0.92209 1.05296 1.20999 0.95323 0.96477 0.98502 1.20976 0.93540 0.98568 1.04759 1.20936 0.99254 0.92384 0.99225 1.20771 0.93628 0.97139 1.05383 1.22946 1.00246 0.97395 0.89406 1.22144 0.91006 0.92800 1.01921 1.61143 1.03997 1.59214 1.07124 0.92618 0.90220 0.94215 0.85185 0.86349 0.86660 0.86401 0.86162 0.94403 0.90752 0.91140 0.90821 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 2 C 0.08 2.38 5.47 -17.82 -0.10 2.29 16 3 Si 0.93 23.56 26.02 -169.99 -4.42 19.13 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.32 -8.10 7.11 56.52 0.40 -7.70 16 6 H -0.27 -6.75 6.55 56.52 0.37 -6.38 16 7 C -0.53 -14.39 9.27 -34.44 -0.32 -14.71 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.19 4.28 1.94 -68.81 -0.13 4.15 16 10 H 0.05 1.28 7.21 -51.93 -0.37 0.90 16 11 C 0.04 0.71 3.51 -3.77 -0.01 0.70 16 12 N -0.49 -8.68 4.76 -170.95 -0.81 -9.49 16 13 C 0.12 1.99 5.64 -83.79 -0.47 1.52 16 14 C -0.17 -2.68 8.82 -39.38 -0.35 -3.03 16 15 C -0.09 -1.25 10.04 -39.61 -0.40 -1.65 16 16 C -0.16 -1.93 10.04 -39.55 -0.40 -2.33 16 17 C -0.10 -1.22 10.04 -39.61 -0.40 -1.61 16 18 C -0.15 -2.09 9.19 -39.38 -0.36 -2.45 16 19 C 0.03 0.43 5.37 -3.77 -0.02 0.41 16 20 C 0.05 0.88 6.72 -3.76 -0.03 0.85 16 21 N -0.68 -14.28 4.08 -107.82 -0.44 -14.72 16 22 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 23 H 0.08 1.61 7.15 -51.93 -0.37 1.24 16 24 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 25 H 0.13 2.09 5.81 -52.49 -0.31 1.78 16 26 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 27 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 29 H 0.12 1.54 7.17 -52.49 -0.38 1.17 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.01 6.81 -51.93 -0.35 0.66 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.34 6.85 8.79 -39.29 -0.35 6.51 16 LS Contribution 271.08 15.07 4.09 4.09 Total: -1.00 -30.01 271.08 -8.45 -38.46 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -4.64 Total: 4.82 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -2.98 Total: -15.86 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.48 Total: -50.63 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -4.42 Total: 19.13 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.01 -8.45 -38.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219936692.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.162 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds