Wall clock time and date at job start Mon Mar 30 2020 03:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 H 1.08997 * 109.48706 * 60.32576 * 9 7 2 11 11 C 1.53047 * 109.48954 * 180.38672 * 9 7 2 12 12 N 1.46962 * 109.36737 * 178.37381 * 11 9 7 13 13 C 1.39671 * 111.00227 * 176.81548 * 12 11 9 14 14 C 1.38919 * 120.07316 * 359.56261 * 13 12 11 15 15 C 1.38106 * 119.92029 * 179.77027 * 14 13 12 16 16 C 1.38286 * 120.07621 * 0.51316 * 15 14 13 17 17 C 1.38285 * 120.15102 * 359.74243 * 16 15 14 18 18 C 1.38106 * 120.07037 * 359.97438 * 17 16 15 19 19 C 1.46955 * 110.87593 * 300.67936 * 12 11 9 20 20 C 1.53053 * 109.36665 * 59.32197 * 19 12 11 21 21 N 1.46947 * 109.49463 * 300.27987 * 9 7 2 22 22 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.49161 * 298.34350 * 11 9 7 24 24 H 1.09004 * 109.48900 * 58.40427 * 11 9 7 25 25 H 1.07998 * 120.03593 * 0.02562 * 14 13 12 26 26 H 1.07999 * 119.95824 * 180.25847 * 15 14 13 27 27 H 1.08000 * 119.92076 * 179.77071 * 16 15 14 28 28 H 1.08000 * 119.96251 * 180.02562 * 17 16 15 29 29 H 1.08001 * 120.03137 * 180.02562 * 18 17 16 30 30 H 1.09000 * 109.49033 * 299.35403 * 19 12 11 31 31 H 1.08997 * 109.50856 * 179.29861 * 19 12 11 32 32 H 1.08995 * 109.49049 * 181.62963 * 20 19 12 33 33 H 1.08998 * 109.50712 * 61.57053 * 20 19 12 34 34 H 1.00903 * 111.00426 * 304.58536 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 1 3.8789 -0.6827 0.8840 11 6 4.0222 -2.6367 -0.0136 12 7 5.4911 -2.6336 -0.0591 13 6 5.9967 -3.9340 0.0050 14 6 5.1290 -5.0140 0.1072 15 6 5.6321 -6.2988 0.1656 16 6 6.9984 -6.5102 0.1331 17 6 7.8651 -5.4370 0.0368 18 6 7.3685 -4.1499 -0.0279 19 6 5.9763 -1.9385 -1.2595 20 6 5.4657 -0.4956 -1.2518 21 7 3.9969 -0.4989 -1.2061 22 1 -0.4850 0.8400 -0.0004 23 1 3.6875 -3.1458 0.8903 24 1 3.6323 -3.1558 -0.8892 25 1 4.0620 -4.8493 0.1368 26 1 4.9579 -7.1391 0.2408 27 1 7.3893 -7.5157 0.1826 28 1 8.9316 -5.6056 0.0113 29 1 8.0460 -3.3123 -0.1035 30 1 5.6086 -2.4496 -2.1493 31 1 7.0663 -1.9384 -1.2645 32 1 5.8004 0.0134 -2.1556 33 1 5.8556 0.0237 -0.3763 34 1 3.6100 -0.9092 -2.0429 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219936692.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:00 Heat of formation + Delta-G solvation = 21.179635 kcal Electronic energy + Delta-G solvation = -16224.783197 eV Core-core repulsion = 13735.559365 eV Total energy + Delta-G solvation = -2489.223832 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.31950 -39.00699 -35.76199 -34.40482 -32.63337 -31.53201 -30.22285 -27.54195 -26.18026 -24.11044 -22.75090 -22.20066 -21.19667 -19.19108 -18.32613 -16.88093 -16.36481 -16.26890 -16.01245 -15.62052 -15.51231 -14.89633 -14.79201 -14.47626 -14.30836 -14.07563 -13.37188 -13.04756 -12.77102 -12.52242 -12.37950 -12.10261 -12.04508 -11.75142 -11.71376 -11.25398 -10.77165 -10.67262 -9.85953 -9.13913 -8.77712 -8.27653 -6.41838 0.46976 0.48956 1.50397 1.56311 1.71011 2.50946 2.66161 2.97289 3.03085 3.65687 3.89264 4.08150 4.09886 4.20826 4.21567 4.29539 4.31836 4.47947 4.58506 4.63693 4.68777 4.80849 4.86936 5.05131 5.05363 5.15128 5.38153 5.51581 5.55629 5.64922 5.89395 6.01390 6.12183 6.30846 6.37757 6.72245 6.75361 7.35640 8.85001 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.044149 B = 0.007032 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.064334 B = 3980.623206 C = 4469.265383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.032 3.968 3 Si 0.998 3.002 4 H -0.271 1.271 5 H -0.322 1.322 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.035 0.965 9 C 0.196 3.804 10 H 0.035 0.965 11 C 0.054 3.946 12 N -0.499 5.499 13 C 0.095 3.905 14 C -0.195 4.195 15 C -0.101 4.101 16 C -0.153 4.153 17 C -0.095 4.095 18 C -0.152 4.152 19 C 0.031 3.969 20 C 0.053 3.947 21 N -0.696 5.696 22 H 0.266 0.734 23 H 0.064 0.936 24 H 0.030 0.970 25 H 0.110 0.890 26 H 0.136 0.864 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.134 0.866 30 H 0.037 0.963 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.549 -8.673 -2.714 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.167 4.167 3 Si 0.827 3.173 4 H -0.197 1.197 5 H -0.252 1.252 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.053 0.947 9 C 0.087 3.913 10 H 0.053 0.947 11 C -0.074 4.074 12 N -0.214 5.214 13 C -0.003 4.003 14 C -0.216 4.216 15 C -0.119 4.119 16 C -0.171 4.171 17 C -0.113 4.113 18 C -0.172 4.172 19 C -0.096 4.096 20 C -0.077 4.077 21 N -0.326 5.326 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.048 0.952 25 H 0.128 0.872 26 H 0.154 0.846 27 H 0.165 0.835 28 H 0.170 0.830 29 H 0.152 0.848 30 H 0.055 0.945 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 17.505 -7.598 -2.050 19.193 hybrid contribution -0.707 -0.583 -0.607 1.099 sum 16.799 -8.181 -2.657 18.873 Atomic orbital electron populations 1.70074 1.08482 1.28333 1.51471 1.25801 0.95144 1.03487 0.92302 0.84883 0.77372 0.76641 0.78396 1.19667 1.25160 1.18958 1.21064 0.90288 0.93141 1.52149 0.94658 1.19388 0.92969 0.88576 0.90334 0.94747 1.22612 0.84964 0.99803 1.00050 1.59260 1.09577 1.14061 1.38464 1.19356 0.94605 0.88018 0.98331 1.21488 0.99531 0.93612 1.07012 1.21270 0.96681 0.95941 0.98022 1.21403 0.92799 1.00286 1.02655 1.21364 1.01097 0.91461 0.97408 1.20989 0.92552 0.98649 1.04989 1.22966 1.01852 0.96050 0.88698 1.22253 0.88051 0.94071 1.03287 1.60841 1.06949 1.58785 1.06068 0.92512 0.91731 0.95179 0.87187 0.84599 0.83460 0.82980 0.84791 0.94481 0.87783 0.87935 0.91322 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.15 13.96 21.45 0.30 -58.85 16 2 C 0.03 1.89 5.47 84.65 0.46 2.35 16 3 Si 1.00 49.16 26.02 68.60 1.79 50.94 16 4 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.32 -15.97 7.11 99.48 0.71 -15.27 16 6 H -0.26 -12.64 6.55 99.48 0.65 -11.99 16 7 C -0.53 -29.95 9.27 25.60 0.24 -29.71 16 8 H 0.04 2.20 7.99 -2.91 -0.02 2.18 16 9 C 0.20 9.13 1.94 44.18 0.09 9.22 16 10 H 0.03 1.73 7.21 -2.39 -0.02 1.71 16 11 C 0.05 2.22 3.51 86.31 0.30 2.53 16 12 N -0.50 -17.21 4.76 -694.78 -3.30 -20.51 16 13 C 0.09 2.96 5.64 38.21 0.22 3.17 16 14 C -0.20 -6.08 8.82 22.40 0.20 -5.88 16 15 C -0.10 -2.49 10.04 22.25 0.22 -2.26 16 16 C -0.15 -3.12 10.04 22.29 0.22 -2.90 16 17 C -0.09 -1.93 10.04 22.25 0.22 -1.71 16 18 C -0.15 -3.80 9.19 22.40 0.21 -3.59 16 19 C 0.03 0.90 5.37 86.31 0.46 1.36 16 20 C 0.05 1.66 6.72 86.31 0.58 2.24 16 21 N -0.70 -28.37 4.08 -495.04 -2.02 -30.39 16 22 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 23 H 0.06 2.77 7.15 -2.39 -0.02 2.75 16 24 H 0.03 1.26 7.60 -2.38 -0.02 1.24 16 25 H 0.11 3.75 5.81 -2.91 -0.02 3.73 16 26 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 27 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 28 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 29 H 0.13 2.92 7.17 -2.91 -0.02 2.90 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 2.43 6.81 -2.39 -0.02 2.41 16 32 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.34 13.59 8.79 -89.69 -0.79 12.80 16 Total: -1.00 -66.50 271.08 0.43 -66.07 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.25 Total: 17.91 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 3.42 Total: -25.17 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -5.03 Total: -109.75 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 1.79 Total: 50.94 kcal Total: -66.50 0.43 -66.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219936692.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.245 kcal (2) G-P(sol) polarization free energy of solvation -66.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds