Wall clock time and date at job start Mon Mar 30 2020 02:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35044 * 126.00201 * 2 1 4 4 C 1.40922 * 107.85644 * 180.14195 * 3 2 1 5 5 C 1.48264 * 126.04805 * 179.86114 * 4 3 2 6 6 C 1.38575 * 125.95852 * 179.71535 * 5 4 3 7 7 N 1.36098 * 106.91468 * 179.74040 * 6 5 4 8 8 C 1.46495 * 126.39454 * 179.97438 * 7 6 5 9 9 C 1.37590 * 107.20911 * 0.02562 * 7 6 5 10 10 C 1.39934 * 125.69858 * 179.97438 * 9 7 6 11 11 H 1.08004 * 120.00454 * 359.97438 * 10 9 7 12 12 C 1.40159 * 119.99729 * 179.97438 * 10 9 7 13 13 N 1.30726 * 120.00348 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99854 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46963 * 60.00266 * 14 12 10 16 16 H 1.48496 * 109.46888 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47237 * 299.99941 * 14 12 10 18 18 N 1.32843 * 108.60029 * 359.97438 * 9 7 6 19 19 N 1.31734 * 107.89754 * 359.60354 * 4 3 2 20 20 N 1.35085 * 125.99867 * 179.70332 * 2 1 3 21 21 H 0.97004 * 125.92117 * 0.02903 * 20 2 1 22 22 H 1.08998 * 109.47441 * 270.27208 * 1 2 3 23 23 H 1.09005 * 109.47466 * 30.27490 * 1 2 3 24 24 H 1.09008 * 109.47430 * 150.27242 * 1 2 3 25 25 H 1.08003 * 126.06703 * 359.97438 * 3 2 1 26 26 H 1.08004 * 126.54089 * 359.75948 * 6 5 4 27 27 H 1.08999 * 109.47500 * 90.02291 * 8 7 6 28 28 H 1.08999 * 109.47440 * 210.02805 * 8 7 6 29 29 H 1.09004 * 109.47023 * 330.02523 * 8 7 6 30 30 H 0.97005 * 120.00175 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3007 1.0925 0.0000 4 6 3.6399 0.6536 -0.0033 5 6 4.8423 1.5210 -0.0074 6 6 6.1585 1.0874 -0.0051 7 7 6.9420 2.2002 -0.0163 8 6 8.4066 2.2320 -0.0179 9 6 6.1017 3.2897 -0.0246 10 6 6.5029 4.6302 -0.0367 11 1 7.5537 4.8795 -0.0398 12 6 5.5409 5.6495 -0.0449 13 7 4.2689 5.3479 -0.0416 14 14 6.0764 7.4391 -0.0603 15 1 6.8882 7.7023 -1.2755 16 1 4.8770 8.3146 -0.0665 17 1 6.8895 7.7229 1.1494 18 7 4.8459 2.8563 -0.0193 19 7 3.6342 -0.6637 0.0034 20 7 2.3009 -1.0929 0.0057 21 1 1.9999 -2.0150 0.0100 22 1 -0.3634 0.0049 1.0276 23 1 -0.3634 0.8875 -0.5181 24 1 -0.3634 -0.8925 -0.5096 25 1 1.9682 2.1201 -0.0004 26 1 6.4977 0.0621 0.0036 27 1 8.7690 2.2306 -1.0459 28 1 8.7510 3.1342 0.4875 29 1 8.7896 1.3548 0.5035 30 1 3.6031 6.0534 -0.0469 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259514455.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:02 Heat of formation + Delta-G solvation = 101.515944 kcal Electronic energy + Delta-G solvation = -15430.546176 eV Core-core repulsion = 12841.265645 eV Total energy + Delta-G solvation = -2589.280531 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.08702 -41.47223 -35.28522 -34.62285 -33.23957 -31.88617 -30.39718 -27.95457 -27.48539 -26.66757 -23.34952 -21.74944 -20.99348 -19.88047 -18.59301 -18.04190 -17.10975 -16.25161 -16.05348 -15.62225 -15.07121 -14.61416 -14.47675 -14.24169 -13.68713 -13.59945 -13.38471 -13.28934 -12.85490 -12.78521 -12.74493 -12.33703 -11.88921 -11.53839 -11.14360 -10.69459 -9.81608 -9.68375 -9.48222 -8.75242 -8.27841 -6.25717 0.76967 1.34970 1.47333 1.52885 1.60464 2.06619 2.12656 2.29806 2.66526 2.98642 3.68531 3.71788 3.93017 4.25173 4.38286 4.52464 4.60178 4.71538 4.76673 4.80645 4.97034 5.05026 5.14628 5.33066 5.39398 5.64840 5.72491 6.10747 6.26437 6.57752 6.60471 6.84041 7.01885 7.36251 8.23599 8.67561 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.027847 B = 0.007560 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.247962 B = 3702.585046 C = 4687.380698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.098 3.902 3 C -0.282 4.282 4 C 0.161 3.839 5 C 0.021 3.979 6 C -0.112 4.112 7 N -0.508 5.508 8 C 0.090 3.910 9 C 0.338 3.662 10 C -0.490 4.490 11 H 0.094 0.906 12 C 0.032 3.968 13 N -0.788 5.788 14 Si 0.994 3.006 15 H -0.259 1.259 16 H -0.275 1.275 17 H -0.258 1.258 18 N -0.530 5.530 19 N -0.326 5.326 20 N -0.468 5.468 21 H 0.451 0.549 22 H 0.096 0.904 23 H 0.088 0.912 24 H 0.100 0.900 25 H 0.127 0.873 26 H 0.170 0.830 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 -6.742 0.142 7.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.031 4.031 3 C -0.311 4.311 4 C -0.002 4.002 5 C -0.112 4.112 6 C -0.249 4.249 7 N -0.195 5.195 8 C -0.052 4.052 9 C 0.093 3.907 10 C -0.529 4.529 11 H 0.112 0.888 12 C -0.188 4.188 13 N -0.414 5.414 14 Si 0.815 3.185 15 H -0.183 1.183 16 H -0.199 1.199 17 H -0.183 1.183 18 N -0.252 5.252 19 N -0.152 5.152 20 N -0.180 5.180 21 H 0.299 0.701 22 H 0.114 0.886 23 H 0.107 0.893 24 H 0.118 0.882 25 H 0.145 0.855 26 H 0.187 0.813 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.097 -7.300 0.143 7.931 hybrid contribution 0.395 0.463 -0.018 0.609 sum -2.701 -6.836 0.125 7.352 Atomic orbital electron populations 1.20588 0.83347 1.05357 1.04792 1.21512 0.96347 0.86219 0.99002 1.21313 0.91730 0.99734 1.18331 1.19829 0.92822 0.90061 0.97520 1.18831 0.89373 0.91574 1.11388 1.22591 0.90839 0.91677 1.19772 1.45574 1.07530 1.05901 1.60537 1.21841 0.76304 1.04173 1.02884 1.20605 0.83335 0.89271 0.97464 1.18491 0.95186 0.87098 1.52170 0.88827 1.26747 0.94153 1.05424 0.92462 1.70181 1.02086 1.35653 1.33492 0.85100 0.78421 0.75127 0.79896 1.18292 1.19934 1.18262 1.71191 1.19244 1.06499 1.28273 1.77363 0.97582 1.11132 1.29143 1.46108 1.02922 1.08738 1.60187 0.70135 0.88551 0.89290 0.88175 0.85487 0.81270 0.91277 0.90010 0.89015 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 10.42 71.23 0.74 -0.82 16 2 C 0.10 3.14 7.19 41.32 0.30 3.44 16 3 C -0.28 -12.49 10.66 22.19 0.24 -12.25 16 4 C 0.16 7.99 7.11 42.48 0.30 8.29 16 5 C 0.02 1.19 7.03 41.63 0.29 1.48 16 6 C -0.11 -5.63 11.59 84.11 0.97 -4.65 16 7 N -0.51 -25.07 3.20 -542.43 -1.73 -26.81 16 8 C 0.09 3.19 10.93 127.77 1.40 4.59 16 9 C 0.34 19.72 7.41 133.60 0.99 20.71 16 10 C -0.49 -27.13 8.98 23.15 0.21 -26.93 16 11 H 0.09 4.65 7.11 -2.91 -0.02 4.63 16 12 C 0.03 1.68 5.50 85.32 0.47 2.15 16 13 N -0.79 -45.67 11.88 21.86 0.26 -45.41 16 14 Si 0.99 39.58 29.56 68.60 2.03 41.61 16 15 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 16 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 17 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 18 N -0.53 -32.75 9.38 -182.45 -1.71 -34.47 16 19 N -0.33 -13.90 12.72 -48.17 -0.61 -14.51 16 20 N -0.47 -14.67 7.35 -48.09 -0.35 -15.03 16 21 H 0.45 9.57 8.96 -213.34 -1.91 7.66 16 22 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 24 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.13 6.11 8.06 -2.91 -0.02 6.08 16 26 H 0.17 7.36 8.06 -2.91 -0.02 7.34 16 27 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.08 2.78 7.33 -2.39 -0.02 2.76 16 29 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.28 14.55 8.29 -92.70 -0.77 13.78 16 Total: -1.00 -78.21 270.75 3.04 -75.17 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -0.74 Total: 23.44 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 5.91 Total: -4.00 kcal Atomic # 7 Polarization: -132.07 SS G_CDS: -4.15 Total: -136.22 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -78.21 3.04 -75.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259514455.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.686 kcal (2) G-P(sol) polarization free energy of solvation -78.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds