Wall clock time and date at job start Mon Mar 30 2020 03:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48498 * 109.47390 * 270.00185 * 3 2 1 5 5 H 1.48510 * 109.46770 * 30.00285 * 3 2 1 6 6 H 1.48497 * 109.47114 * 149.99791 * 3 2 1 7 7 C 1.37882 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00046 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99609 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.46643 * 59.98324 * 9 7 2 11 11 C 1.53045 * 109.46240 * 179.97438 * 9 7 2 12 12 C 1.53116 * 109.27736 * 179.19482 * 11 9 7 13 13 H 1.08999 * 109.57374 * 62.28704 * 12 11 9 14 14 C 1.50707 * 109.51718 * 182.44304 * 12 11 9 15 15 C 1.38223 * 119.61967 * 84.68859 * 14 12 11 16 16 C 1.38625 * 119.15978 * 180.27814 * 15 14 12 17 17 C 1.38677 * 118.42126 * 359.46985 * 16 15 14 18 18 C 1.38182 * 119.16110 * 0.48634 * 17 16 15 19 19 N 1.31856 * 119.61465 * 264.65931 * 14 12 11 20 20 C 1.53112 * 109.16449 * 302.34718 * 12 11 9 21 21 C 1.53036 * 109.28036 * 57.65384 * 20 12 11 22 22 N 1.46843 * 109.52431 * 300.82580 * 21 20 12 23 23 H 0.96997 * 119.99833 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.49692 * 59.25473 * 11 9 7 25 25 H 1.08997 * 109.49885 * 299.14082 * 11 9 7 26 26 H 1.08002 * 120.41617 * 359.97438 * 15 14 12 27 27 H 1.08003 * 120.79223 * 179.72202 * 16 15 14 28 28 H 1.08007 * 120.41718 * 180.26474 * 17 16 15 29 29 H 1.07998 * 119.61686 * 179.76233 * 18 17 16 30 30 H 1.08997 * 109.50554 * 177.60106 * 20 12 11 31 31 H 1.09008 * 109.50595 * 297.71403 * 20 12 11 32 32 H 1.08999 * 109.45945 * 60.83570 * 21 20 12 33 33 H 1.09001 * 109.46492 * 180.80495 * 21 20 12 34 34 H 1.00899 * 111.00007 * 185.83829 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8751 -0.6801 0.8887 11 6 4.0215 -2.6370 -0.0010 12 6 5.5525 -2.6320 -0.0219 13 1 5.9285 -2.1488 0.8799 14 6 6.0599 -4.0499 -0.0824 15 6 6.1686 -4.6849 -1.3053 16 6 6.6309 -5.9910 -1.3494 17 6 6.9786 -6.6087 -0.1574 18 6 6.8440 -5.9101 1.0272 19 7 6.3954 -4.6700 1.0318 20 6 6.0359 -1.8626 -1.2542 21 6 5.4676 -0.4421 -1.2181 22 7 4.0004 -0.5009 -1.1998 23 1 -0.4850 0.8400 0.0004 24 1 3.6471 -3.1553 -0.8838 25 1 3.6714 -3.1466 0.8967 26 1 5.8923 -4.1716 -2.2145 27 1 6.7220 -6.5139 -2.2900 28 1 7.3465 -7.6242 -0.1547 29 1 7.1090 -6.3854 1.9601 30 1 7.1250 -1.8190 -1.2520 31 1 5.6933 -2.3687 -2.1569 32 1 5.8217 0.0680 -0.3223 33 1 5.7982 0.1040 -2.1015 34 1 3.6006 0.4227 -1.2717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259665780.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:00 Heat of formation + Delta-G solvation = 33.747153 kcal Electronic energy + Delta-G solvation = -16119.709767 eV Core-core repulsion = 13631.030903 eV Total energy + Delta-G solvation = -2488.678863 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.24928 -37.83001 -33.54667 -32.46327 -32.12876 -30.28255 -29.43997 -25.36227 -24.08713 -23.46842 -21.74777 -20.79067 -18.93533 -17.04920 -16.45984 -16.04886 -15.98872 -15.14503 -14.18128 -13.95227 -13.87821 -13.54579 -13.18334 -12.84742 -12.76252 -12.50197 -12.16901 -11.71453 -11.13438 -10.97225 -10.71073 -10.53624 -10.01795 -9.96743 -9.79314 -9.48522 -9.29413 -9.16901 -8.68331 -8.65467 -7.43164 -6.11934 -4.11758 1.23119 1.38666 3.18548 3.25150 3.30384 3.92143 4.31612 4.38223 4.85151 4.88867 4.93834 5.13723 5.25073 5.35608 5.37664 5.52034 5.63283 5.74545 5.91671 5.98861 6.05900 6.17563 6.20811 6.26258 6.37220 6.51405 6.57408 6.69102 6.80304 6.86374 7.21525 7.54952 8.16526 8.17529 8.29209 8.53614 8.93597 9.49027 11.01397 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.043246 B = 0.006695 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.298513 B = 4181.185535 C = 4455.060052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.872 3.128 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.501 4.501 8 H 0.079 0.921 9 C 0.182 3.818 10 H -0.001 1.001 11 C -0.079 4.079 12 C -0.047 4.047 13 H 0.081 0.919 14 C 0.152 3.848 15 C -0.169 4.169 16 C -0.076 4.076 17 C -0.190 4.190 18 C 0.098 3.902 19 N -0.486 5.486 20 C -0.103 4.103 21 C 0.049 3.951 22 N -0.682 5.682 23 H 0.265 0.735 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.138 0.862 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.151 0.849 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.019 0.981 33 H 0.062 0.938 34 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.726 -8.214 -2.351 17.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.539 4.539 8 H 0.097 0.903 9 C 0.075 3.925 10 H 0.017 0.983 11 C -0.117 4.117 12 C -0.067 4.067 13 H 0.100 0.900 14 C 0.015 3.985 15 C -0.189 4.189 16 C -0.102 4.102 17 C -0.210 4.210 18 C -0.059 4.059 19 N -0.194 5.194 20 C -0.141 4.141 21 C -0.081 4.081 22 N -0.321 5.321 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.156 0.844 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.169 0.831 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 14.446 -8.218 -1.932 16.732 hybrid contribution 0.643 1.058 -0.184 1.252 sum 15.089 -7.160 -2.116 16.835 Atomic orbital electron populations 1.69876 1.06103 1.26935 1.50405 1.25005 0.94747 0.98794 0.94317 0.87050 0.80179 0.84377 0.78281 1.19839 1.21678 1.19528 1.21026 0.88224 0.94749 1.49941 0.90263 1.19579 0.95747 0.90498 0.86681 0.98336 1.21473 0.89817 0.98715 1.01735 1.20345 0.98153 0.88695 0.99464 0.90028 1.21446 0.92310 0.96599 0.88138 1.22088 1.01383 0.95606 0.99787 1.21566 0.95559 0.94589 0.98500 1.22054 1.03649 1.01386 0.93905 1.22721 0.94973 0.90380 0.97851 1.67543 1.10822 1.09961 1.31105 1.21632 0.98619 0.95952 0.97883 1.21893 0.91236 0.95749 0.99195 1.61135 1.03704 1.22689 1.44523 0.92514 0.91698 0.92104 0.84382 0.85156 0.85281 0.83146 0.92466 0.90846 0.96315 0.91907 0.85469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.29 13.96 55.43 0.77 -26.52 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 21.38 24.66 -169.99 -4.19 17.19 16 4 H -0.27 -6.39 6.95 56.52 0.39 -6.00 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.50 -14.22 9.34 -34.44 -0.32 -14.54 16 8 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 9 C 0.18 4.38 1.90 -68.87 -0.13 4.25 16 10 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 11 C -0.08 -1.65 4.58 -26.65 -0.12 -1.77 16 12 C -0.05 -0.83 2.57 -91.65 -0.24 -1.07 16 13 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 14 C 0.15 2.46 5.80 -82.58 -0.48 1.99 16 15 C -0.17 -2.33 9.18 -39.44 -0.36 -2.69 16 16 C -0.08 -0.88 10.18 -39.28 -0.40 -1.28 16 17 C -0.19 -2.09 10.11 -39.44 -0.40 -2.49 16 18 C 0.10 1.26 11.18 -17.55 -0.20 1.06 16 19 N -0.49 -7.89 10.27 -9.47 -0.10 -7.98 16 20 C -0.10 -1.63 4.87 -26.65 -0.13 -1.76 16 21 C 0.05 0.89 6.55 -3.84 -0.03 0.86 16 22 N -0.68 -15.28 6.42 -107.99 -0.69 -15.98 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.14 1.76 6.26 -52.49 -0.33 1.43 16 27 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 28 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 29 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.12 6.37 -51.92 -0.33 0.79 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.32 7.52 3.97 -39.29 -0.16 7.36 16 LS Contribution 270.77 15.07 4.08 4.08 Total: -1.00 -31.23 270.77 -7.62 -38.84 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -4.59 Total: 5.77 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -2.90 Total: -15.40 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.02 Total: -50.48 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.19 Total: 17.19 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.23 -7.62 -38.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259665780.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.591 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds