Wall clock time and date at job start Mon Mar 30 2020 03:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48498 * 109.47390 * 270.00185 * 3 2 1 5 5 H 1.48510 * 109.46770 * 30.00285 * 3 2 1 6 6 H 1.48497 * 109.47114 * 149.99791 * 3 2 1 7 7 C 1.37882 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00046 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99609 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.46643 * 59.98324 * 9 7 2 11 11 C 1.53045 * 109.46240 * 179.97438 * 9 7 2 12 12 C 1.53116 * 109.27736 * 179.19482 * 11 9 7 13 13 H 1.08999 * 109.57374 * 62.28704 * 12 11 9 14 14 C 1.50707 * 109.51718 * 182.44304 * 12 11 9 15 15 C 1.38223 * 119.61967 * 84.68859 * 14 12 11 16 16 C 1.38625 * 119.15978 * 180.27814 * 15 14 12 17 17 C 1.38677 * 118.42126 * 359.46985 * 16 15 14 18 18 C 1.38182 * 119.16110 * 0.48634 * 17 16 15 19 19 N 1.31856 * 119.61465 * 264.65931 * 14 12 11 20 20 C 1.53112 * 109.16449 * 302.34718 * 12 11 9 21 21 C 1.53036 * 109.28036 * 57.65384 * 20 12 11 22 22 N 1.46843 * 109.52431 * 300.82580 * 21 20 12 23 23 H 0.96997 * 119.99833 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.49692 * 59.25473 * 11 9 7 25 25 H 1.08997 * 109.49885 * 299.14082 * 11 9 7 26 26 H 1.08002 * 120.41617 * 359.97438 * 15 14 12 27 27 H 1.08003 * 120.79223 * 179.72202 * 16 15 14 28 28 H 1.08007 * 120.41718 * 180.26474 * 17 16 15 29 29 H 1.07998 * 119.61686 * 179.76233 * 18 17 16 30 30 H 1.08997 * 109.50554 * 177.60106 * 20 12 11 31 31 H 1.09008 * 109.50595 * 297.71403 * 20 12 11 32 32 H 1.08999 * 109.45945 * 60.83570 * 21 20 12 33 33 H 1.09001 * 109.46492 * 180.80495 * 21 20 12 34 34 H 1.00899 * 111.00007 * 185.83829 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8751 -0.6801 0.8887 11 6 4.0215 -2.6370 -0.0010 12 6 5.5525 -2.6320 -0.0219 13 1 5.9285 -2.1488 0.8799 14 6 6.0599 -4.0499 -0.0824 15 6 6.1686 -4.6849 -1.3053 16 6 6.6309 -5.9910 -1.3494 17 6 6.9786 -6.6087 -0.1574 18 6 6.8440 -5.9101 1.0272 19 7 6.3954 -4.6700 1.0318 20 6 6.0359 -1.8626 -1.2542 21 6 5.4676 -0.4421 -1.2181 22 7 4.0004 -0.5009 -1.1998 23 1 -0.4850 0.8400 0.0004 24 1 3.6471 -3.1553 -0.8838 25 1 3.6714 -3.1466 0.8967 26 1 5.8923 -4.1716 -2.2145 27 1 6.7220 -6.5139 -2.2900 28 1 7.3465 -7.6242 -0.1547 29 1 7.1090 -6.3854 1.9601 30 1 7.1250 -1.8190 -1.2520 31 1 5.6933 -2.3687 -2.1569 32 1 5.8217 0.0680 -0.3223 33 1 5.7982 0.1040 -2.1015 34 1 3.6006 0.4227 -1.2717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259665780.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:00 Heat of formation + Delta-G solvation = 11.403464 kcal Electronic energy + Delta-G solvation = -16120.678662 eV Core-core repulsion = 13631.030903 eV Total energy + Delta-G solvation = -2489.647758 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.34127 -39.35582 -35.24961 -34.06167 -33.31575 -32.04347 -30.65442 -27.27840 -25.47766 -24.49954 -23.12013 -22.35011 -20.47938 -18.92460 -17.93459 -17.50333 -17.11614 -16.19359 -15.94205 -15.54983 -15.32968 -14.85626 -14.61446 -14.51479 -14.11592 -13.88496 -13.73538 -12.97391 -12.65973 -12.57829 -12.54598 -11.93769 -11.85863 -11.71221 -11.21738 -11.13250 -10.83406 -10.73349 -10.27815 -9.79677 -9.20077 -8.35100 -6.41254 0.23533 0.43824 1.21658 1.28336 1.35690 2.23507 2.89834 2.91789 3.28985 3.60049 3.76309 4.04741 4.09842 4.15588 4.23684 4.28907 4.34268 4.44134 4.60727 4.72217 4.81088 4.82287 4.84810 4.96815 5.05086 5.09313 5.20149 5.30566 5.35055 5.48845 5.53723 5.87514 6.22094 6.40557 6.47983 6.72389 7.14675 7.24139 8.81892 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.043246 B = 0.006695 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.298513 B = 4181.185535 C = 4455.060052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.017 3.983 3 Si 0.940 3.060 4 H -0.249 1.249 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.516 4.516 8 H 0.035 0.965 9 C 0.188 3.812 10 H -0.013 1.013 11 C -0.069 4.069 12 C -0.038 4.038 13 H 0.068 0.932 14 C 0.124 3.876 15 C -0.176 4.176 16 C -0.075 4.075 17 C -0.176 4.176 18 C 0.082 3.918 19 N -0.522 5.522 20 C -0.095 4.095 21 C 0.043 3.957 22 N -0.691 5.691 23 H 0.268 0.732 24 H 0.055 0.945 25 H 0.039 0.961 26 H 0.146 0.854 27 H 0.165 0.835 28 H 0.168 0.832 29 H 0.175 0.825 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.020 0.980 33 H 0.093 0.907 34 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.743 -8.722 -3.618 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.181 4.181 3 Si 0.765 3.235 4 H -0.174 1.174 5 H -0.215 1.215 6 H -0.184 1.184 7 C -0.555 4.555 8 H 0.054 0.946 9 C 0.080 3.920 10 H 0.004 0.996 11 C -0.108 4.108 12 C -0.058 4.058 13 H 0.086 0.914 14 C -0.013 4.013 15 C -0.196 4.196 16 C -0.100 4.100 17 C -0.196 4.196 18 C -0.074 4.074 19 N -0.232 5.232 20 C -0.133 4.133 21 C -0.086 4.086 22 N -0.328 5.328 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.164 0.836 27 H 0.183 0.817 28 H 0.185 0.815 29 H 0.192 0.808 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.038 0.962 33 H 0.111 0.889 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.485 -8.738 -3.211 19.809 hybrid contribution -0.303 1.036 0.242 1.106 sum 17.182 -7.703 -2.969 19.063 Atomic orbital electron populations 1.70033 1.08044 1.28213 1.51958 1.25882 0.95572 1.02926 0.93730 0.85944 0.78914 0.79064 0.79568 1.17410 1.21463 1.18450 1.21280 0.90838 0.93330 1.50019 0.94616 1.19364 0.93000 0.92577 0.87023 0.99600 1.21268 0.93043 0.96262 1.00194 1.20132 0.94983 0.90739 0.99907 0.91403 1.21201 0.94694 0.96065 0.89335 1.22224 1.01528 0.96823 0.99017 1.22015 0.94061 0.93676 1.00286 1.22494 1.01507 1.02703 0.92859 1.23245 0.94669 0.89570 0.99953 1.67443 1.12125 1.11864 1.31760 1.21620 1.00273 0.94236 0.97144 1.22134 0.88107 0.97699 1.00648 1.60961 1.06756 1.22134 1.42984 0.92254 0.92651 0.94212 0.83631 0.81703 0.81456 0.80780 0.89420 0.90041 0.96218 0.88866 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.59 13.96 21.45 0.30 -59.29 16 2 C 0.02 1.03 5.47 84.66 0.46 1.49 16 3 Si 0.94 44.50 24.66 68.60 1.69 46.19 16 4 H -0.25 -10.84 6.95 99.48 0.69 -10.15 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.26 -11.76 6.54 99.48 0.65 -11.10 16 7 C -0.52 -30.69 9.34 25.60 0.24 -30.45 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 9 C 0.19 9.26 1.90 44.19 0.08 9.34 16 10 H -0.01 -0.68 7.20 -2.39 -0.02 -0.70 16 11 C -0.07 -2.99 4.58 30.65 0.14 -2.85 16 12 C -0.04 -1.33 2.57 -11.46 -0.03 -1.36 16 13 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 14 C 0.12 3.89 5.80 42.55 0.25 4.14 16 15 C -0.18 -4.48 9.18 22.36 0.21 -4.27 16 16 C -0.07 -1.44 10.18 22.47 0.23 -1.22 16 17 C -0.18 -3.21 10.11 22.36 0.23 -2.98 16 18 C 0.08 1.94 11.18 84.67 0.95 2.88 16 19 N -0.52 -16.60 10.27 -183.88 -1.89 -18.49 16 20 C -0.09 -2.78 4.87 30.64 0.15 -2.64 16 21 C 0.04 1.45 6.55 86.33 0.57 2.01 16 22 N -0.69 -30.26 6.42 -495.57 -3.18 -33.44 16 23 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 24 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.15 3.35 6.26 -2.91 -0.02 3.34 16 27 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 28 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 29 H 0.18 3.01 8.06 -2.91 -0.02 2.98 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 2.28 6.37 -2.38 -0.02 2.26 16 32 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.32 14.22 3.97 -89.69 -0.36 13.86 16 Total: -1.00 -71.20 270.77 1.05 -70.15 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.66 Total: 20.78 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 3.47 Total: -25.90 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -4.77 Total: -111.21 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.69 Total: 46.19 kcal Total: -71.20 1.05 -70.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259665780.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.555 kcal (2) G-P(sol) polarization free energy of solvation -71.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds