Wall clock time and date at job start Mon Mar 30 2020 03:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.81725 * 303.67470 * 9 7 2 11 11 C 1.54436 * 110.92592 * 67.39686 * 9 7 2 12 12 C 1.51313 * 104.99444 * 143.89470 * 11 9 7 13 13 N 1.35218 * 141.95251 * 163.09542 * 12 11 9 14 14 H 0.97006 * 126.02595 * 359.96405 * 13 12 11 15 15 N 1.39998 * 107.94363 * 179.97438 * 13 12 11 16 16 C 1.30742 * 108.21006 * 359.97438 * 15 13 12 17 17 C 1.50701 * 125.87533 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.46924 * 269.97690 * 17 16 15 19 19 C 1.53001 * 117.49731 * 243.74612 * 18 17 16 20 20 C 1.53004 * 117.49288 * 175.09152 * 18 17 16 21 21 C 1.35138 * 110.30392 * 343.07326 * 12 11 9 22 22 C 1.51362 * 110.24761 * 359.97438 * 21 12 11 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09002 * 110.33606 * 262.77543 * 11 9 7 25 25 H 1.09007 * 110.33611 * 25.01292 * 11 9 7 26 26 H 1.08993 * 109.47214 * 29.97893 * 17 16 15 27 27 H 1.09003 * 109.46703 * 149.97683 * 17 16 15 28 28 H 1.08996 * 115.55182 * 29.42196 * 18 17 16 29 29 H 1.09004 * 117.50200 * 0.02562 * 19 18 17 30 30 H 1.09000 * 117.49758 * 145.01935 * 19 18 17 31 31 H 1.09008 * 117.49384 * 214.97371 * 20 18 17 32 32 H 1.08994 * 117.50161 * 359.97438 * 20 18 17 33 33 H 1.09001 * 110.33036 * 258.05045 * 22 21 12 34 34 H 1.08998 * 110.41992 * 135.86404 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.5685 -2.5524 0.8476 11 6 0.4946 -2.6994 -1.3320 12 6 0.5804 -4.1840 -1.6116 13 7 0.0182 -5.1612 -2.3582 14 1 -0.7084 -5.0491 -2.9910 15 7 0.6694 -6.3632 -2.0564 16 6 1.5898 -6.1158 -1.1614 17 6 2.5270 -7.1283 -0.5551 18 6 1.8900 -7.7244 0.7018 19 6 2.5905 -7.4689 2.0378 20 6 2.6382 -8.8605 1.4020 21 6 1.5543 -4.7467 -0.8624 22 6 2.2249 -3.6979 -0.0015 23 1 -0.4849 -0.8401 0.0004 24 1 -0.5462 -2.3934 -1.2261 25 1 0.9769 -2.1350 -2.1302 26 1 2.7197 -7.9224 -1.2763 27 1 3.4659 -6.6417 -0.2909 28 1 0.8007 -7.7627 0.7038 29 1 3.5049 -6.8758 2.0214 30 1 1.9620 -7.3394 2.9189 31 1 2.0411 -9.6461 1.8652 32 1 3.5840 -9.1835 0.9670 33 1 3.1825 -3.4085 -0.4342 34 1 2.3659 -4.0718 1.0127 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259828721.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:51 Heat of formation + Delta-G solvation = 83.567971 kcal Electronic energy + Delta-G solvation = -15848.478848 eV Core-core repulsion = 13361.960377 eV Total energy + Delta-G solvation = -2486.518470 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.01924 -37.41896 -35.95490 -32.27302 -32.16960 -27.96262 -27.46280 -26.51693 -24.06262 -22.32300 -21.06444 -20.19742 -19.34065 -18.84824 -16.94159 -16.28643 -15.50279 -14.93688 -14.25638 -13.78319 -13.57394 -13.32646 -12.66946 -12.46564 -11.86407 -11.76191 -11.47959 -11.44937 -11.36044 -10.91587 -10.81575 -10.46109 -10.27063 -10.13824 -10.08861 -9.77135 -9.58808 -8.78890 -8.56780 -8.44330 -7.57742 -6.40852 -4.13627 2.38226 3.15708 3.25842 3.42111 3.44830 3.60415 3.87743 4.48967 4.75368 4.92702 4.98179 5.16811 5.31350 5.41202 5.45993 5.64287 5.70059 5.76192 5.88201 5.95842 6.13318 6.19323 6.25521 6.35049 6.36502 6.70755 6.75846 6.88443 6.92973 7.13899 7.28248 7.53203 7.85177 8.16592 8.18868 8.39496 8.81636 9.58456 10.97347 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.033068 B = 0.006388 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.535910 B = 4382.295829 C = 4949.704960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 1.070 2.930 4 H -0.287 1.287 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.591 4.591 8 H 0.055 0.945 9 C 0.045 3.955 10 H 0.032 0.968 11 C -0.042 4.042 12 C 0.064 3.936 13 N -0.472 5.472 14 H 0.430 0.570 15 N -0.307 5.307 16 C 0.095 3.905 17 C -0.005 4.005 18 C -0.139 4.139 19 C -0.176 4.176 20 C -0.183 4.183 21 C -0.252 4.252 22 C -0.029 4.029 23 H 0.271 0.729 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.322 -11.691 -0.222 12.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.184 4.184 3 Si 0.898 3.102 4 H -0.214 1.214 5 H -0.211 1.211 6 H -0.214 1.214 7 C -0.629 4.629 8 H 0.073 0.927 9 C 0.026 3.974 10 H 0.050 0.950 11 C -0.082 4.082 12 C -0.064 4.064 13 N -0.179 5.179 14 H 0.273 0.727 15 N -0.131 5.131 16 C -0.071 4.071 17 C -0.044 4.044 18 C -0.158 4.158 19 C -0.213 4.213 20 C -0.220 4.220 21 C -0.263 4.263 22 C -0.067 4.067 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.585 -10.938 -0.943 11.279 hybrid contribution -0.052 -1.061 -0.007 1.062 sum 2.533 -11.999 -0.951 12.300 Atomic orbital electron populations 1.70789 1.06884 1.30854 1.46155 1.25840 0.96511 1.02667 0.93394 0.83523 0.74733 0.75077 0.76847 1.21387 1.21072 1.21401 1.21985 0.94273 0.90848 1.55777 0.92686 1.19589 0.93166 0.93590 0.91078 0.95006 1.21477 1.01441 0.83184 1.02076 1.22695 0.95111 0.95599 0.93007 1.45609 1.31517 1.04575 1.36176 0.72727 1.77127 1.11833 1.03754 1.20344 1.21592 0.96350 0.93455 0.95682 1.19502 0.95411 0.95001 0.94485 1.22154 0.98901 1.01964 0.92816 1.23051 1.02929 0.98752 0.96583 1.22984 1.02345 0.91977 1.04717 1.21156 1.04597 0.92976 1.07524 1.20515 0.98501 0.91632 0.96080 0.91810 0.92197 0.90058 0.90510 0.89936 0.88005 0.88480 0.88986 0.89091 0.88841 0.91927 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.13 13.50 55.43 0.75 -25.38 16 2 C 0.02 0.56 5.37 -17.82 -0.10 0.46 16 3 Si 1.07 24.19 29.90 -169.99 -5.08 19.11 16 4 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.59 -15.75 8.38 -34.44 -0.29 -16.04 16 8 H 0.05 1.46 7.61 -52.48 -0.40 1.06 16 9 C 0.04 1.09 2.57 -90.26 -0.23 0.86 16 10 H 0.03 0.83 7.90 -51.93 -0.41 0.42 16 11 C -0.04 -0.93 5.57 -26.83 -0.15 -1.08 16 12 C 0.06 1.31 8.07 -81.90 -0.66 0.65 16 13 N -0.47 -8.51 7.36 33.64 0.25 -8.26 16 14 H 0.43 6.25 8.96 -182.67 -1.64 4.61 16 15 N -0.31 -5.74 12.69 33.72 0.43 -5.31 16 16 C 0.09 1.74 6.43 -82.33 -0.53 1.21 16 17 C 0.00 -0.07 6.06 -27.88 -0.17 -0.24 16 18 C -0.14 -1.84 5.72 -90.62 -0.52 -2.36 16 19 C -0.18 -2.10 10.18 -26.69 -0.27 -2.37 16 20 C -0.18 -1.94 10.25 -26.69 -0.27 -2.22 16 21 C -0.25 -5.14 6.83 -104.67 -0.72 -5.85 16 22 C -0.03 -0.61 6.33 -26.80 -0.17 -0.78 16 23 H 0.27 7.65 5.79 -40.82 -0.24 7.41 16 24 H 0.06 1.34 7.11 -51.93 -0.37 0.97 16 25 H 0.08 1.89 7.89 -51.92 -0.41 1.48 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.08 1.12 7.88 -51.93 -0.41 0.71 16 28 H 0.10 1.48 8.07 -51.93 -0.42 1.06 16 29 H 0.10 1.13 8.03 -51.93 -0.42 0.71 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 1.34 7.75 -51.93 -0.40 0.94 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 284.25 15.07 4.28 4.28 Total: -1.00 -29.55 284.25 -9.47 -39.02 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.02 Total: 4.32 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -4.07 Total: -27.77 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 1.42 Total: -38.96 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.08 Total: 19.11 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.55 -9.47 -39.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259828721.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.583 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds