Wall clock time and date at job start Mon Mar 30 2020 03:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.81725 * 303.67470 * 9 7 2 11 11 C 1.54436 * 110.92592 * 67.39686 * 9 7 2 12 12 C 1.51313 * 104.99444 * 143.89470 * 11 9 7 13 13 N 1.35218 * 141.95251 * 163.09542 * 12 11 9 14 14 H 0.97006 * 126.02595 * 359.96405 * 13 12 11 15 15 N 1.39998 * 107.94363 * 179.97438 * 13 12 11 16 16 C 1.30742 * 108.21006 * 359.97438 * 15 13 12 17 17 C 1.50701 * 125.87533 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.46924 * 269.97690 * 17 16 15 19 19 C 1.53001 * 117.49731 * 243.74612 * 18 17 16 20 20 C 1.53004 * 117.49288 * 175.09152 * 18 17 16 21 21 C 1.35138 * 110.30392 * 343.07326 * 12 11 9 22 22 C 1.51362 * 110.24761 * 359.97438 * 21 12 11 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09002 * 110.33606 * 262.77543 * 11 9 7 25 25 H 1.09007 * 110.33611 * 25.01292 * 11 9 7 26 26 H 1.08993 * 109.47214 * 29.97893 * 17 16 15 27 27 H 1.09003 * 109.46703 * 149.97683 * 17 16 15 28 28 H 1.08996 * 115.55182 * 29.42196 * 18 17 16 29 29 H 1.09004 * 117.50200 * 0.02562 * 19 18 17 30 30 H 1.09000 * 117.49758 * 145.01935 * 19 18 17 31 31 H 1.09008 * 117.49384 * 214.97371 * 20 18 17 32 32 H 1.08994 * 117.50161 * 359.97438 * 20 18 17 33 33 H 1.09001 * 110.33036 * 258.05045 * 22 21 12 34 34 H 1.08998 * 110.41992 * 135.86404 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.5685 -2.5524 0.8476 11 6 0.4946 -2.6994 -1.3320 12 6 0.5804 -4.1840 -1.6116 13 7 0.0182 -5.1612 -2.3582 14 1 -0.7084 -5.0491 -2.9910 15 7 0.6694 -6.3632 -2.0564 16 6 1.5898 -6.1158 -1.1614 17 6 2.5270 -7.1283 -0.5551 18 6 1.8900 -7.7244 0.7018 19 6 2.5905 -7.4689 2.0378 20 6 2.6382 -8.8605 1.4020 21 6 1.5543 -4.7467 -0.8624 22 6 2.2249 -3.6979 -0.0015 23 1 -0.4849 -0.8401 0.0004 24 1 -0.5462 -2.3934 -1.2261 25 1 0.9769 -2.1350 -2.1302 26 1 2.7197 -7.9224 -1.2763 27 1 3.4659 -6.6417 -0.2909 28 1 0.8007 -7.7627 0.7038 29 1 3.5049 -6.8758 2.0214 30 1 1.9620 -7.3394 2.9189 31 1 2.0411 -9.6461 1.8652 32 1 3.5840 -9.1835 0.9670 33 1 3.1825 -3.4085 -0.4342 34 1 2.3659 -4.0718 1.0127 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259828721.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:51 Heat of formation + Delta-G solvation = 67.703542 kcal Electronic energy + Delta-G solvation = -15849.166781 eV Core-core repulsion = 13361.960377 eV Total energy + Delta-G solvation = -2487.206404 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.57281 -38.42649 -37.73510 -34.26105 -33.54348 -29.49548 -29.06278 -28.19516 -26.03422 -23.19119 -22.27858 -21.99483 -20.75065 -20.33060 -18.88922 -17.96531 -16.67188 -16.46174 -15.62998 -15.58781 -14.97149 -14.73934 -14.26181 -13.82956 -13.58180 -13.49829 -13.23260 -12.65681 -12.55579 -12.46463 -12.28726 -12.22921 -11.89570 -11.76039 -11.47591 -11.22916 -10.76176 -10.56037 -10.51570 -10.23587 -9.20637 -8.57222 -6.30804 0.83375 1.59322 1.64334 1.71788 1.72090 1.84269 2.61005 2.94201 3.21631 3.51458 3.80560 3.89543 4.00421 4.02382 4.21025 4.22590 4.36285 4.47558 4.68867 4.82772 4.82872 4.87329 4.91448 4.96566 5.07725 5.16046 5.20923 5.31459 5.32908 5.44813 5.56514 5.74566 6.11163 6.25172 6.39106 6.66815 6.69549 7.49137 8.81887 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.033068 B = 0.006388 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.535910 B = 4382.295829 C = 4949.704960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.026 4.026 3 Si 1.115 2.885 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.601 4.601 8 H 0.053 0.947 9 C 0.035 3.965 10 H 0.007 0.993 11 C -0.028 4.028 12 C 0.053 3.947 13 N -0.462 5.462 14 H 0.445 0.555 15 N -0.309 5.309 16 C 0.099 3.901 17 C -0.002 4.002 18 C -0.159 4.159 19 C -0.183 4.183 20 C -0.157 4.157 21 C -0.264 4.264 22 C -0.018 4.018 23 H 0.261 0.739 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.060 0.940 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.596 -12.912 -0.264 13.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.225 4.225 3 Si 0.937 3.063 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.639 4.639 8 H 0.072 0.928 9 C 0.016 3.984 10 H 0.025 0.975 11 C -0.068 4.068 12 C -0.076 4.076 13 N -0.171 5.171 14 H 0.290 0.710 15 N -0.132 5.132 16 C -0.068 4.068 17 C -0.041 4.041 18 C -0.178 4.178 19 C -0.220 4.220 20 C -0.194 4.194 21 C -0.275 4.275 22 C -0.057 4.057 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.079 0.921 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.849 -12.187 -0.998 12.819 hybrid contribution -0.474 -0.749 0.018 0.887 sum 3.375 -12.936 -0.979 13.405 Atomic orbital electron populations 1.70894 1.07819 1.30392 1.48218 1.27163 0.96566 1.06143 0.92593 0.82945 0.74255 0.71499 0.77596 1.20109 1.21216 1.19576 1.22288 0.94403 0.92029 1.55156 0.92843 1.19542 0.93565 0.94203 0.91064 0.97490 1.21056 1.00395 0.84714 1.00607 1.22325 0.96116 0.94857 0.94293 1.45605 1.31689 1.03780 1.35990 0.70988 1.77128 1.11916 1.03672 1.20476 1.22117 0.96385 0.93280 0.94975 1.19638 0.94794 0.94554 0.95151 1.22035 0.98130 1.04694 0.92980 1.23131 1.02827 1.00220 0.95859 1.23086 1.02481 0.91288 1.02546 1.21219 1.04718 0.94014 1.07558 1.20310 0.97559 0.90866 0.96930 0.92842 0.93042 0.91374 0.88922 0.89012 0.89778 0.88205 0.89005 0.87810 0.87127 0.92107 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.67 13.50 21.45 0.29 -54.38 16 2 C -0.03 -1.41 5.37 84.65 0.45 -0.96 16 3 Si 1.11 48.36 29.90 68.60 2.05 50.41 16 4 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.60 -32.37 8.38 25.60 0.21 -32.15 16 8 H 0.05 2.84 7.61 -2.91 -0.02 2.81 16 9 C 0.04 1.75 2.57 -10.56 -0.03 1.73 16 10 H 0.01 0.38 7.90 -2.39 -0.02 0.36 16 11 C -0.03 -1.26 5.57 30.53 0.17 -1.09 16 12 C 0.05 2.16 8.07 41.52 0.34 2.49 16 13 N -0.46 -16.20 7.36 -47.47 -0.35 -16.55 16 14 H 0.44 12.44 8.96 -213.38 -1.91 10.53 16 15 N -0.31 -11.05 12.69 -47.24 -0.60 -11.65 16 16 C 0.10 3.46 6.43 43.19 0.28 3.74 16 17 C 0.00 -0.06 6.06 29.85 0.18 0.12 16 18 C -0.16 -3.90 5.72 -10.79 -0.06 -3.97 16 19 C -0.18 -4.00 10.18 30.62 0.31 -3.69 16 20 C -0.16 -2.84 10.25 30.62 0.31 -2.53 16 21 C -0.26 -10.60 6.83 -19.90 -0.14 -10.74 16 22 C -0.02 -0.77 6.33 30.55 0.19 -0.58 16 23 H 0.26 15.26 5.79 -92.71 -0.54 14.72 16 24 H 0.05 2.38 7.11 -2.39 -0.02 2.37 16 25 H 0.07 3.25 7.89 -2.38 -0.02 3.23 16 26 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.09 2.26 7.88 -2.39 -0.02 2.24 16 28 H 0.08 2.36 8.07 -2.39 -0.02 2.34 16 29 H 0.10 2.11 8.03 -2.38 -0.02 2.09 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 2.59 7.75 -2.39 -0.02 2.57 16 34 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -62.45 284.25 3.04 -59.41 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -0.58 Total: 20.39 kcal Atomic # 6 Polarization: -49.86 SS G_CDS: 2.23 Total: -47.63 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -0.66 Total: -82.59 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.05 Total: 50.41 kcal Total: -62.45 3.04 -59.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259828721.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.118 kcal (2) G-P(sol) polarization free energy of solvation -62.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds