Wall clock time and date at job start Mon Mar 30 2020 03:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99650 * 2 1 4 4 H 1.48501 * 109.46767 * 270.00272 * 3 2 1 5 5 H 1.48504 * 109.47120 * 29.99581 * 3 2 1 6 6 H 1.48495 * 109.47373 * 149.99890 * 3 2 1 7 7 C 1.37872 * 120.00564 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00166 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00043 * 0.02562 * 7 2 1 10 10 H 1.09011 * 109.72919 * 300.59254 * 9 7 2 11 11 N 1.47270 * 109.71028 * 61.18663 * 9 7 2 12 12 C 1.46948 * 111.52443 * 171.12519 * 11 9 7 13 13 C 1.53553 * 109.59893 * 288.61914 * 12 11 9 14 14 C 1.50770 * 107.80098 * 48.90865 * 13 12 11 15 15 C 1.40293 * 128.75833 * 164.28962 * 14 13 12 16 16 C 1.34947 * 107.15963 * 180.11216 * 15 14 13 17 17 N 1.36982 * 108.27602 * 0.02562 * 16 15 14 18 18 H 0.96998 * 125.65836 * 179.91455 * 17 16 15 19 19 C 1.35378 * 123.48095 * 344.35298 * 14 13 12 20 20 C 1.51357 * 110.29149 * 180.02562 * 16 15 14 21 21 C 1.54422 * 105.01606 * 343.02928 * 20 16 15 22 22 C 1.51423 * 142.55540 * 0.07450 * 15 14 13 23 23 H 0.96994 * 120.00858 * 0.02562 * 1 2 3 24 24 H 1.00897 * 111.00451 * 295.46203 * 11 9 7 25 25 H 1.08996 * 109.44581 * 48.65046 * 12 11 9 26 26 H 1.08998 * 109.45429 * 168.60233 * 12 11 9 27 27 H 1.09004 * 109.79774 * 168.49038 * 13 12 11 28 28 H 1.09007 * 109.79145 * 289.33849 * 13 12 11 29 29 H 1.08994 * 110.33163 * 224.14521 * 20 16 15 30 30 H 1.09000 * 110.32852 * 101.91025 * 20 16 15 31 31 H 1.09002 * 110.94124 * 143.91176 * 21 20 16 32 32 H 1.08997 * 110.93835 * 267.56496 * 21 20 16 33 33 H 1.09000 * 110.32082 * 78.07515 * 22 15 14 34 34 H 1.08995 * 110.36464 * 315.83556 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 1 0.6147 -2.5566 0.8836 11 7 0.4247 -2.5955 -1.2145 12 6 -0.1634 -3.9341 -1.3617 13 6 0.9340 -4.9405 -1.7367 14 6 2.0845 -4.7449 -0.7820 15 6 3.1679 -5.5986 -0.5257 16 6 3.9363 -4.9976 0.4067 17 7 3.3581 -3.7994 0.7327 18 1 3.7013 -3.1633 1.3796 19 6 2.2272 -3.6499 0.0011 20 6 5.1333 -5.8628 0.7376 21 6 4.7723 -7.2662 0.2040 22 6 3.7668 -6.9324 -0.9194 23 1 -0.4851 0.8399 -0.0004 24 1 -0.2901 -1.8835 -1.2231 25 1 -0.6241 -4.2335 -0.4204 26 1 -0.9202 -3.9139 -2.1459 27 1 0.5492 -5.9565 -1.6479 28 1 1.2674 -4.7593 -2.7586 29 1 5.2900 -5.8963 1.8157 30 1 6.0241 -5.4846 0.2360 31 1 5.6524 -7.7687 -0.1974 32 1 4.3022 -7.8692 0.9808 33 1 4.2823 -6.8483 -1.8760 34 1 2.9907 -7.6959 -0.9724 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259924372.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:56 Heat of formation + Delta-G solvation = 44.799874 kcal Electronic energy + Delta-G solvation = -16351.110735 eV Core-core repulsion = 13862.911154 eV Total energy + Delta-G solvation = -2488.199581 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.92488 -36.61922 -34.88975 -32.96358 -30.68193 -28.84361 -27.27349 -26.75065 -25.16260 -22.20532 -21.51553 -20.03109 -18.36032 -17.58428 -16.67723 -16.10252 -15.31905 -14.63681 -14.12978 -13.76573 -13.32179 -12.80302 -12.69661 -12.42843 -12.23511 -12.08904 -11.68777 -11.22423 -11.08914 -10.93879 -10.90130 -10.84500 -10.61508 -10.45626 -10.11494 -9.63793 -9.30065 -8.65730 -7.64596 -7.02522 -6.70501 -6.16812 -4.23056 3.06503 3.24929 3.31710 3.33702 3.72324 3.86450 4.34434 5.01181 5.08416 5.11946 5.22751 5.70201 5.79185 5.80362 5.88761 5.94179 6.05012 6.10374 6.13754 6.19257 6.36649 6.43784 6.45407 6.58446 6.67699 6.88702 7.12157 7.19310 7.28306 7.69243 7.76865 8.05946 8.17555 8.50440 8.58938 8.86536 9.03509 9.45941 10.91604 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.032083 B = 0.008176 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.522601 B = 3423.643174 C = 4127.335970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.507 4.507 8 H 0.058 0.942 9 C 0.281 3.719 10 H 0.012 0.988 11 N -0.677 5.677 12 C 0.054 3.946 13 C -0.033 4.033 14 C -0.172 4.172 15 C -0.175 4.175 16 C -0.061 4.061 17 N -0.524 5.524 18 H 0.408 0.592 19 C 0.083 3.917 20 C -0.029 4.029 21 C -0.114 4.114 22 C -0.044 4.044 23 H 0.266 0.734 24 H 0.364 0.636 25 H 0.014 0.986 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 -10.206 0.518 11.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.546 4.546 8 H 0.076 0.924 9 C 0.172 3.828 10 H 0.029 0.971 11 N -0.314 5.314 12 C -0.077 4.077 13 C -0.072 4.072 14 C -0.177 4.177 15 C -0.182 4.182 16 C -0.172 4.172 17 N -0.116 5.116 18 H 0.244 0.756 19 C -0.032 4.032 20 C -0.067 4.067 21 C -0.152 4.152 22 C -0.082 4.082 23 H 0.076 0.924 24 H 0.187 0.813 25 H 0.032 0.968 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.699 -10.109 0.226 11.607 hybrid contribution -0.073 1.374 0.932 1.661 sum 5.626 -8.736 1.158 10.455 Atomic orbital electron populations 1.69697 1.06029 1.27312 1.50396 1.24969 0.94928 0.99338 0.93845 0.86452 0.79581 0.82765 0.78311 1.20375 1.21166 1.20034 1.20994 0.92820 0.89599 1.51157 0.92357 1.17689 0.88223 0.88497 0.88352 0.97106 1.60584 1.27335 1.02414 1.41076 1.21923 0.95155 0.92449 0.98140 1.19975 0.93024 0.96918 0.97237 1.18621 0.99066 0.95412 1.04640 1.19868 0.97916 0.97795 1.02666 1.20784 1.00816 0.90028 1.05613 1.40900 1.20078 1.15997 1.34631 0.75648 1.20872 0.89585 0.97869 0.94923 1.20400 0.93478 0.92621 1.00184 1.22285 0.98934 0.95634 0.98330 1.20363 0.96701 0.93652 0.97474 0.92412 0.81282 0.96796 0.92637 0.92958 0.92067 0.92182 0.91349 0.91019 0.91315 0.91800 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 11.64 55.43 0.65 -23.96 16 2 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.51 -13.79 8.72 -34.44 -0.30 -14.09 16 8 H 0.06 1.58 7.70 -52.48 -0.40 1.17 16 9 C 0.28 7.25 2.74 -69.72 -0.19 7.06 16 10 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 11 N -0.68 -16.81 6.38 -108.47 -0.69 -17.51 16 12 C 0.05 1.13 6.53 -3.51 -0.02 1.11 16 13 C -0.03 -0.66 6.51 -27.56 -0.18 -0.84 16 14 C -0.17 -3.80 6.01 -104.84 -0.63 -4.43 16 15 C -0.18 -3.42 6.95 -104.66 -0.73 -4.15 16 16 C -0.06 -1.14 8.04 -81.14 -0.65 -1.79 16 17 N -0.52 -10.87 5.97 -5.08 -0.03 -10.90 16 18 H 0.41 7.71 8.96 -40.82 -0.37 7.35 16 19 C 0.08 1.96 6.41 -81.89 -0.52 1.43 16 20 C -0.03 -0.40 6.78 -26.81 -0.18 -0.58 16 21 C -0.11 -1.39 7.13 -25.24 -0.18 -1.57 16 22 C -0.04 -0.66 6.79 -26.79 -0.18 -0.84 16 23 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.36 9.43 7.04 -39.29 -0.28 9.16 16 25 H 0.01 0.30 8.07 -51.93 -0.42 -0.12 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 274.35 15.07 4.13 4.13 Total: -1.00 -29.38 274.35 -9.66 -39.04 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.83 Total: 10.10 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -3.87 Total: -16.84 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.08 Total: -52.36 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.38 -9.66 -39.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259924372.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.837 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds